Wall clock time and date at job start Mon Mar 30 2020 20:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47941 * 111.00362 * 2 1 4 4 C 1.53913 * 113.33627 * 192.19226 * 3 2 1 5 5 C 1.50540 * 112.93837 * 317.74824 * 4 3 2 6 6 H 1.08997 * 109.67986 * 331.87122 * 5 4 3 7 7 O 1.42903 * 109.56736 * 211.56469 * 5 4 3 8 8 C 1.54520 * 108.86068 * 91.75352 * 5 4 3 9 9 H 1.09004 * 109.03835 * 43.33519 * 8 5 4 10 10 C 1.52998 * 109.04188 * 162.27593 * 8 5 4 11 11 C 1.50700 * 109.47271 * 184.99833 * 10 8 5 12 12 H 1.08001 * 120.00069 * 359.97438 * 11 10 8 13 13 C 1.37876 * 120.00276 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99559 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47332 * 89.99532 * 15 13 11 17 17 H 1.48500 * 109.47022 * 209.99626 * 15 13 11 18 18 H 1.48500 * 109.47066 * 329.99291 * 15 13 11 19 19 C 1.45881 * 111.67041 * 282.77069 * 8 5 4 20 20 C 1.44310 * 110.99746 * 232.59281 * 2 1 3 21 21 H 1.08995 * 109.47151 * 187.40880 * 1 2 3 22 22 H 1.09002 * 109.46655 * 307.40672 * 1 2 3 23 23 H 1.08997 * 109.47203 * 67.40280 * 1 2 3 24 24 H 1.09005 * 108.71070 * 313.18608 * 3 2 1 25 25 H 1.08996 * 108.71058 * 71.19064 * 3 2 1 26 26 H 1.09001 * 108.78733 * 196.85911 * 4 3 2 27 27 H 1.08996 * 108.79130 * 78.64360 * 4 3 2 28 28 H 0.96700 * 114.00311 * 60.62757 * 7 5 4 29 29 H 1.08995 * 109.47464 * 305.00270 * 10 8 5 30 30 H 1.09006 * 109.46487 * 65.00004 * 10 8 5 31 31 H 0.96997 * 119.99716 * 180.02562 * 14 13 11 32 32 H 1.09001 * 108.83952 * 182.31580 * 19 8 5 33 33 H 1.09001 * 108.83917 * 300.78166 * 19 8 5 34 34 H 1.09001 * 109.69257 * 101.63971 * 20 2 1 35 35 H 1.08998 * 109.69419 * 341.05257 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3811 0.0000 4 6 3.5074 1.4552 -0.2985 5 6 4.2993 0.3908 0.4131 6 1 3.7909 0.1101 1.3355 7 8 5.6038 0.8882 0.7178 8 6 4.4182 -0.8435 -0.5089 9 1 4.6460 -0.5104 -1.5214 10 6 5.5581 -1.7327 -0.0080 11 6 5.7633 -2.8753 -0.9689 12 1 5.1424 -2.9592 -1.8487 13 6 6.7429 -3.8142 -0.7245 14 7 7.4986 -3.7123 0.3471 15 14 6.9977 -5.2301 -1.9160 16 1 7.9846 -4.8336 -2.9523 17 1 7.5048 -6.4140 -1.1767 18 1 5.7061 -5.5685 -2.5661 19 6 3.1840 -1.6210 -0.5300 20 6 1.9861 -0.8184 -1.0702 21 1 -0.3633 -1.0190 0.1325 22 1 -0.3633 0.6243 0.8164 23 1 -0.3633 0.3949 -0.9487 24 1 1.4650 1.9608 -0.7528 25 1 1.8139 1.8268 0.9772 26 1 3.8784 2.4330 0.0086 27 1 3.6585 1.3463 -1.3724 28 1 5.6040 1.6647 1.2941 29 1 6.4740 -1.1457 0.0594 30 1 5.3057 -2.1267 0.9765 31 1 8.1880 -4.3727 0.5189 32 1 3.3318 -2.4990 -1.1587 33 1 2.9573 -1.9491 0.4845 34 1 2.3110 -0.1832 -1.8943 35 1 1.2116 -1.5027 -1.4164 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:04 Heat of formation + Delta-G solvation = -81.529699 kcal Electronic energy + Delta-G solvation = -15090.534577 eV Core-core repulsion = 12700.967596 eV Total energy + Delta-G solvation = -2389.566981 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56434 -37.58198 -36.10493 -34.19805 -32.60139 -30.27941 -27.78932 -25.85436 -25.12702 -23.47938 -20.90408 -20.84594 -18.50906 -18.09467 -16.81957 -16.54085 -16.27322 -15.81254 -15.10199 -14.57575 -14.28302 -14.20196 -14.08167 -13.62497 -13.42931 -12.94426 -12.85374 -12.49393 -12.40668 -12.25347 -12.01585 -11.84506 -11.70070 -11.33241 -11.08063 -10.72841 -10.59871 -10.49440 -9.04720 -8.14161 -6.24506 1.39012 1.41390 1.51994 2.43041 3.03124 3.18164 3.44675 3.90577 4.04675 4.15734 4.19261 4.25044 4.49474 4.58053 4.60743 4.66479 4.79108 4.83292 4.85811 5.06930 5.08779 5.18097 5.30943 5.33740 5.41830 5.53289 5.69283 5.90942 5.98750 6.25401 6.31250 6.35799 6.91203 7.13426 7.43079 8.98109 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038260 B = 0.008505 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.661666 B = 3291.289882 C = 3814.807949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.573 5.573 3 C 0.070 3.930 4 C -0.143 4.143 5 C 0.120 3.880 6 H 0.050 0.950 7 O -0.584 6.584 8 C -0.063 4.063 9 H 0.043 0.957 10 C 0.043 3.957 11 C -0.533 4.533 12 H 0.062 0.938 13 C -0.005 4.005 14 N -0.937 5.937 15 Si 0.963 3.037 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.260 1.260 19 C -0.092 4.092 20 C 0.071 3.929 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.384 0.616 29 H -0.009 1.009 30 H -0.022 1.022 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 10.257 -1.536 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.298 5.298 3 C -0.057 4.057 4 C -0.181 4.181 5 C 0.062 3.938 6 H 0.068 0.932 7 O -0.392 6.392 8 C -0.081 4.081 9 H 0.061 0.939 10 C 0.006 3.994 11 C -0.571 4.571 12 H 0.080 0.920 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.130 4.130 20 C -0.057 4.057 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.232 0.768 29 H 0.009 0.991 30 H -0.004 1.004 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.323 9.481 -1.425 16.414 hybrid contribution 0.318 -0.096 -0.647 0.727 sum -13.005 9.384 -2.072 16.170 Atomic orbital electron populations 1.22405 0.85505 1.02752 1.00861 1.60674 1.08702 1.12990 1.47470 1.22322 0.93253 0.88176 1.01919 1.22101 0.95213 0.99735 1.01077 1.21448 0.82130 0.93203 0.97041 0.93191 1.86683 1.29779 1.50586 1.72108 1.20036 0.96458 0.94468 0.97170 0.93895 1.18860 0.93371 0.93091 0.94110 1.21740 1.16966 1.09778 1.08590 0.91985 1.26020 0.95725 1.01220 0.97266 1.70147 1.21981 1.37102 1.28509 0.85476 0.78848 0.78261 0.78647 1.19973 1.20820 1.18396 1.20345 0.93359 0.98145 1.01190 1.21766 0.96558 0.95697 0.91704 0.91252 0.90425 0.95031 0.93454 0.89843 0.88827 0.92702 0.76789 0.99103 1.00364 0.93032 0.92478 0.93369 0.94020 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.27 127.69 1.18 1.80 16 2 N -0.57 -14.87 4.25 -922.49 -3.92 -18.80 16 3 C 0.07 1.58 5.42 86.41 0.47 2.05 16 4 C -0.14 -3.84 5.01 30.11 0.15 -3.69 16 5 C 0.12 4.38 2.80 30.31 0.09 4.46 16 6 H 0.05 1.87 7.80 -2.39 -0.02 1.85 16 7 O -0.58 -22.55 11.83 -148.98 -1.76 -24.32 16 8 C -0.06 -2.77 1.63 -12.46 -0.02 -2.79 16 9 H 0.04 1.95 7.59 -2.38 -0.02 1.93 16 10 C 0.04 2.45 4.16 29.85 0.12 2.57 16 11 C -0.53 -31.76 8.30 25.60 0.21 -31.55 16 12 H 0.06 3.51 6.82 -2.91 -0.02 3.49 16 13 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 14 N -0.94 -60.28 13.29 21.45 0.28 -59.99 16 15 Si 0.96 46.05 29.54 68.60 2.03 48.07 16 16 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 19 C -0.09 -3.62 4.48 28.74 0.13 -3.50 16 20 C 0.07 2.09 5.42 87.12 0.47 2.56 16 21 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 22 H 0.08 1.26 8.11 -2.39 -0.02 1.24 16 23 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 0.91 8.02 -2.38 -0.02 0.90 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 27 H 0.05 1.58 6.66 -2.39 -0.02 1.57 16 28 H 0.38 10.06 8.94 -74.06 -0.66 9.40 16 29 H -0.01 -0.61 7.14 -2.39 -0.02 -0.62 16 30 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 31 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 32 H 0.06 2.45 6.44 -2.39 -0.02 2.43 16 33 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.04 1.21 6.79 -2.39 -0.02 1.19 16 35 H 0.08 2.04 7.57 -2.39 -0.02 2.02 16 Total: -1.00 -72.37 270.80 0.28 -72.08 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.39 Total: 10.89 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 3.27 Total: -27.94 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.64 Total: -78.79 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.76 Total: -24.32 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.37 0.28 -72.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.447 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds