Wall clock time and date at job start Mon Mar 30 2020 20:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47638 * 110.99907 * 2 1 4 4 C 1.50811 * 108.03735 * 150.32595 * 3 2 1 5 5 C 1.53820 * 111.61606 * 95.06257 * 4 3 2 6 6 H 1.09000 * 108.91058 * 79.63782 * 5 4 3 7 7 O 1.42898 * 108.98188 * 198.39573 * 5 4 3 8 8 C 1.54164 * 111.97627 * 319.03828 * 5 4 3 9 9 H 1.09010 * 108.85176 * 79.18580 * 8 5 4 10 10 C 1.53002 * 108.85732 * 197.67242 * 8 5 4 11 11 C 1.50696 * 109.46997 * 186.49163 * 10 8 5 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.50755 * 112.52972 * 318.43341 * 8 5 4 20 20 C 1.39780 * 111.00581 * 231.10117 * 2 1 3 21 21 H 1.09000 * 109.47738 * 63.95715 * 1 2 3 22 22 H 1.09010 * 109.46730 * 183.95169 * 1 2 3 23 23 H 1.08996 * 109.47387 * 303.95101 * 1 2 3 24 24 H 1.09003 * 109.74433 * 30.69318 * 3 2 1 25 25 H 1.08996 * 109.78844 * 269.99075 * 3 2 1 26 26 H 1.09003 * 109.05658 * 334.51411 * 4 3 2 27 27 H 1.09001 * 108.99495 * 215.57132 * 4 3 2 28 28 H 0.96703 * 113.99944 * 302.47088 * 7 5 4 29 29 H 1.09005 * 109.46767 * 66.49514 * 10 8 5 30 30 H 1.09002 * 109.47113 * 306.49854 * 10 8 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.54095 * 212.92398 * 19 8 5 33 33 H 1.08993 * 109.54308 * 333.19520 * 19 8 5 34 34 H 1.09011 * 109.01722 * 309.72548 * 20 2 1 35 35 H 1.09000 * 109.02471 * 68.61622 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9980 1.3783 0.0000 4 6 3.3285 1.3678 0.7099 5 6 4.4981 1.2353 -0.2803 6 1 4.6957 2.2102 -0.7261 7 8 5.6614 0.8047 0.4292 8 6 4.1921 0.2235 -1.4025 9 1 3.5549 0.7034 -2.1454 10 6 5.5062 -0.1867 -2.0703 11 6 5.2119 -1.0503 -3.2697 12 1 4.1899 -1.2830 -3.5299 13 6 6.2476 -1.5435 -4.0348 14 7 5.9908 -2.2968 -5.0818 15 14 8.0153 -1.1416 -3.5842 16 1 8.4303 0.1067 -4.2733 17 1 8.1214 -0.9546 -2.1149 18 1 8.8996 -2.2574 -4.0064 19 6 3.4983 -1.0135 -0.8915 20 6 1.9700 -0.8194 -1.0156 21 1 -0.3634 0.4512 -0.9233 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 1.3063 2.0383 0.5237 25 1 2.1304 1.7228 -1.0256 26 1 3.3543 0.5287 1.4052 27 1 3.4395 2.2967 1.2693 28 1 5.9196 1.3909 1.1537 29 1 6.1153 -0.7462 -1.3603 30 1 6.0461 0.7052 -2.3883 31 1 6.7194 -2.6434 -5.6203 32 1 3.8053 -1.8750 -1.4845 33 1 3.7635 -1.1750 0.1532 34 1 1.4824 -1.7928 -0.9596 35 1 1.7466 -0.3655 -1.9811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260705300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:07 Heat of formation + Delta-G solvation = -53.460941 kcal Electronic energy + Delta-G solvation = -15208.934060 eV Core-core repulsion = 12820.584232 eV Total energy + Delta-G solvation = -2388.349828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.39627 -36.52365 -34.07730 -32.11355 -31.57236 -28.93504 -26.43948 -24.25745 -24.01277 -21.12417 -20.43428 -18.70888 -16.93391 -16.44291 -15.67754 -15.20798 -14.81801 -14.06495 -13.85292 -13.16359 -12.90966 -12.82629 -12.52118 -12.35502 -11.88252 -11.55804 -11.29697 -11.19935 -10.84118 -10.60000 -10.54283 -10.14600 -9.77602 -9.59059 -9.35118 -9.11607 -8.93389 -8.43347 -7.97713 -5.95700 -3.91761 3.38837 3.45968 3.55858 4.17639 4.55692 4.79312 5.00218 5.16002 5.35500 5.38439 5.42081 5.54087 5.58555 5.70173 5.80404 5.86387 5.89962 6.03775 6.11539 6.16371 6.33650 6.58406 6.71136 6.76216 7.08302 7.23181 7.32416 7.47037 7.68704 7.70824 7.89891 8.14860 8.63518 9.09816 9.68553 11.17557 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038395 B = 0.009440 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.090549 B = 2965.375918 C = 3530.840507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.558 5.558 3 C 0.069 3.931 4 C -0.149 4.149 5 C 0.107 3.893 6 H 0.041 0.959 7 O -0.555 6.555 8 C -0.066 4.066 9 H 0.063 0.937 10 C -0.001 4.001 11 C -0.515 4.515 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.907 5.907 15 Si 0.877 3.123 16 H -0.280 1.280 17 H -0.261 1.261 18 H -0.290 1.290 19 C -0.104 4.104 20 C 0.069 3.931 21 H 0.021 0.979 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.361 0.639 29 H 0.028 0.972 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 7.556 11.640 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.282 5.282 3 C -0.058 4.058 4 C -0.187 4.187 5 C 0.048 3.952 6 H 0.059 0.941 7 O -0.358 6.358 8 C -0.084 4.084 9 H 0.082 0.918 10 C -0.039 4.039 11 C -0.553 4.553 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.547 5.547 15 Si 0.704 3.296 16 H -0.206 1.206 17 H -0.185 1.185 18 H -0.216 1.216 19 C -0.141 4.141 20 C -0.060 4.060 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.206 0.794 29 H 0.046 0.954 30 H 0.023 0.977 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.285 6.760 11.439 15.153 hybrid contribution 0.663 1.052 -0.310 1.281 sum -6.622 7.811 11.129 15.124 Atomic orbital electron populations 1.22330 0.87668 1.01874 0.99861 1.58945 1.06712 1.12103 1.50452 1.21668 0.95786 0.88576 0.99725 1.22175 0.94961 1.02044 0.99536 1.22479 0.83804 0.97038 0.91896 0.94105 1.86728 1.46204 1.53422 1.49436 1.20952 0.99518 0.94216 0.93720 0.91824 1.19505 0.92672 0.96085 0.95589 1.21231 0.94963 1.29817 1.09316 0.91003 1.25011 0.99045 0.94742 0.94750 1.69926 1.32159 1.35199 1.17412 0.86808 0.85178 0.77739 0.79831 1.20614 1.18544 1.21640 1.21552 0.91380 0.99574 1.01626 1.21109 0.97457 0.96099 0.91301 0.96019 0.91685 0.91953 0.91465 0.93710 0.89717 0.92626 0.79404 0.95378 0.97692 0.92942 0.89033 0.91876 0.91702 0.96161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.44 60.06 0.57 0.93 16 2 N -0.56 -8.12 4.19 -248.23 -1.04 -9.16 16 3 C 0.07 0.94 5.36 -4.52 -0.02 0.91 16 4 C -0.15 -2.04 4.99 -27.40 -0.14 -2.18 16 5 C 0.11 1.79 3.13 -25.70 -0.08 1.71 16 6 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 7 O -0.55 -9.58 12.01 -35.23 -0.42 -10.00 16 8 C -0.07 -1.34 1.54 -91.14 -0.14 -1.48 16 9 H 0.06 1.33 6.56 -51.92 -0.34 0.99 16 10 C 0.00 -0.03 2.89 -27.88 -0.08 -0.11 16 11 C -0.52 -14.88 8.48 -34.44 -0.29 -15.17 16 12 H 0.07 2.20 7.59 -52.49 -0.40 1.80 16 13 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 15 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 16 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 C -0.10 -2.03 4.93 -27.04 -0.13 -2.16 16 20 C 0.07 1.17 4.94 -6.68 -0.03 1.13 16 21 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.06 0.72 7.94 -51.92 -0.41 0.31 16 23 H 0.06 0.63 7.97 -51.93 -0.41 0.21 16 24 H 0.07 0.76 7.71 -51.93 -0.40 0.36 16 25 H 0.04 0.65 6.66 -51.93 -0.35 0.31 16 26 H 0.08 1.26 7.25 -51.93 -0.38 0.89 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.36 4.31 9.05 45.56 0.41 4.72 16 29 H 0.03 0.74 6.62 -51.93 -0.34 0.40 16 30 H 0.00 0.12 7.57 -51.93 -0.39 -0.27 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.09 2.06 6.48 -51.93 -0.34 1.72 16 33 H 0.06 1.22 7.10 -51.93 -0.37 0.86 16 34 H 0.06 1.04 7.87 -51.92 -0.41 0.63 16 35 H 0.02 0.37 7.54 -51.93 -0.39 -0.03 16 LS Contribution 266.19 15.07 4.01 4.01 Total: -1.00 -32.17 266.19 -6.75 -38.92 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.95 Total: 0.53 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.45 Total: -14.58 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.27 Total: -36.89 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.42 Total: -10.00 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.17 -6.75 -38.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.538 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds