Wall clock time and date at job start Mon Mar 30 2020 20:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47638 * 110.99907 * 2 1 4 4 C 1.50811 * 108.03735 * 150.32595 * 3 2 1 5 5 C 1.53820 * 111.61606 * 95.06257 * 4 3 2 6 6 H 1.09000 * 108.91058 * 79.63782 * 5 4 3 7 7 O 1.42898 * 108.98188 * 198.39573 * 5 4 3 8 8 C 1.54164 * 111.97627 * 319.03828 * 5 4 3 9 9 H 1.09010 * 108.85176 * 79.18580 * 8 5 4 10 10 C 1.53002 * 108.85732 * 197.67242 * 8 5 4 11 11 C 1.50696 * 109.46997 * 186.49163 * 10 8 5 12 12 H 1.07999 * 120.00319 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99717 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.50755 * 112.52972 * 318.43341 * 8 5 4 20 20 C 1.39780 * 111.00581 * 231.10117 * 2 1 3 21 21 H 1.09000 * 109.47738 * 63.95715 * 1 2 3 22 22 H 1.09010 * 109.46730 * 183.95169 * 1 2 3 23 23 H 1.08996 * 109.47387 * 303.95101 * 1 2 3 24 24 H 1.09003 * 109.74433 * 30.69318 * 3 2 1 25 25 H 1.08996 * 109.78844 * 269.99075 * 3 2 1 26 26 H 1.09003 * 109.05658 * 334.51411 * 4 3 2 27 27 H 1.09001 * 108.99495 * 215.57132 * 4 3 2 28 28 H 0.96703 * 113.99944 * 302.47088 * 7 5 4 29 29 H 1.09005 * 109.46767 * 66.49514 * 10 8 5 30 30 H 1.09002 * 109.47113 * 306.49854 * 10 8 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.54095 * 212.92398 * 19 8 5 33 33 H 1.08993 * 109.54308 * 333.19520 * 19 8 5 34 34 H 1.09011 * 109.01722 * 309.72548 * 20 2 1 35 35 H 1.09000 * 109.02471 * 68.61622 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9980 1.3783 0.0000 4 6 3.3285 1.3678 0.7099 5 6 4.4981 1.2353 -0.2803 6 1 4.6957 2.2102 -0.7261 7 8 5.6614 0.8047 0.4292 8 6 4.1921 0.2235 -1.4025 9 1 3.5549 0.7034 -2.1454 10 6 5.5062 -0.1867 -2.0703 11 6 5.2119 -1.0503 -3.2697 12 1 4.1899 -1.2830 -3.5299 13 6 6.2476 -1.5435 -4.0348 14 7 5.9908 -2.2968 -5.0818 15 14 8.0153 -1.1416 -3.5842 16 1 8.4303 0.1067 -4.2733 17 1 8.1214 -0.9546 -2.1149 18 1 8.8996 -2.2574 -4.0064 19 6 3.4983 -1.0135 -0.8915 20 6 1.9700 -0.8194 -1.0156 21 1 -0.3634 0.4512 -0.9233 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3634 0.5739 0.8524 24 1 1.3063 2.0383 0.5237 25 1 2.1304 1.7228 -1.0256 26 1 3.3543 0.5287 1.4052 27 1 3.4395 2.2967 1.2693 28 1 5.9196 1.3909 1.1537 29 1 6.1153 -0.7462 -1.3603 30 1 6.0461 0.7052 -2.3883 31 1 6.7194 -2.6434 -5.6203 32 1 3.8053 -1.8750 -1.4845 33 1 3.7635 -1.1750 0.1532 34 1 1.4824 -1.7928 -0.9596 35 1 1.7466 -0.3655 -1.9811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:06 Heat of formation + Delta-G solvation = -78.150934 kcal Electronic energy + Delta-G solvation = -15210.004699 eV Core-core repulsion = 12820.584232 eV Total energy + Delta-G solvation = -2389.420467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.70994 -37.79323 -35.86012 -34.07614 -32.84041 -30.65456 -27.91606 -25.74732 -25.29714 -22.97397 -21.69818 -20.21964 -18.97351 -17.94047 -16.95676 -16.54605 -16.14332 -16.01436 -15.18616 -14.72369 -14.46865 -14.23515 -14.14989 -13.90554 -13.29801 -12.99105 -12.74945 -12.62288 -12.37725 -12.26626 -11.99559 -11.79053 -11.63389 -11.40566 -11.04782 -10.85574 -10.73515 -10.52638 -9.14169 -8.27747 -6.28750 1.32575 1.35497 1.50290 2.37201 3.05220 3.09050 3.55741 3.85765 3.90864 4.05620 4.19789 4.30935 4.46879 4.57763 4.60860 4.63903 4.76310 4.81632 4.89289 4.97176 5.03770 5.12343 5.19482 5.30767 5.38749 5.45308 5.55261 5.69051 5.81344 6.25944 6.32212 6.45053 6.77376 7.10618 7.34932 8.88702 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038395 B = 0.009440 C = 0.007928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.090549 B = 2965.375918 C = 3530.840507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.565 5.565 3 C 0.065 3.935 4 C -0.137 4.137 5 C 0.111 3.889 6 H 0.051 0.949 7 O -0.578 6.578 8 C -0.065 4.065 9 H 0.052 0.948 10 C 0.007 3.993 11 C -0.519 4.519 12 H 0.037 0.963 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.254 1.254 18 H -0.283 1.283 19 C -0.096 4.096 20 C 0.084 3.916 21 H 0.022 0.978 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.386 0.614 29 H 0.016 0.984 30 H 0.003 0.997 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 9.358 13.818 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.289 5.289 3 C -0.061 4.061 4 C -0.175 4.175 5 C 0.052 3.948 6 H 0.069 0.931 7 O -0.386 6.386 8 C -0.084 4.084 9 H 0.070 0.930 10 C -0.030 4.030 11 C -0.557 4.557 12 H 0.055 0.945 13 C -0.192 4.192 14 N -0.593 5.593 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.178 1.178 18 H -0.209 1.209 19 C -0.134 4.134 20 C -0.046 4.046 21 H 0.040 0.960 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.235 0.765 29 H 0.034 0.966 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -7.330 8.584 13.642 17.707 hybrid contribution 0.601 0.468 -0.999 1.256 sum -6.728 9.052 12.644 16.943 Atomic orbital electron populations 1.22418 0.85626 1.02746 1.00949 1.58945 1.08509 1.12585 1.48867 1.21810 0.96587 0.88313 0.99438 1.22069 0.93423 1.03555 0.98426 1.22341 0.85273 0.95526 0.91646 0.93073 1.86648 1.46422 1.54835 1.50666 1.20893 0.96852 0.95521 0.95125 0.92983 1.19374 0.94973 0.94823 0.93844 1.21523 0.93494 1.30084 1.10609 0.94498 1.25935 1.03905 0.94712 0.94685 1.70066 1.33718 1.36700 1.18801 0.85725 0.79434 0.78040 0.79865 1.19324 1.17781 1.20877 1.21368 0.93643 0.97715 1.00694 1.20850 0.95429 0.97006 0.91321 0.95987 0.91297 0.89460 0.88188 0.95102 0.90631 0.88918 0.76506 0.96564 0.97859 0.92678 0.93126 0.91542 0.91231 0.98030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.44 127.69 1.21 1.83 16 2 N -0.56 -15.30 4.19 -939.27 -3.93 -19.23 16 3 C 0.07 1.56 5.36 85.45 0.46 2.02 16 4 C -0.14 -3.27 4.99 30.16 0.15 -3.12 16 5 C 0.11 3.49 3.13 31.26 0.10 3.59 16 6 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 7 O -0.58 -18.63 12.01 -148.98 -1.79 -20.42 16 8 C -0.07 -2.69 1.54 -11.13 -0.02 -2.71 16 9 H 0.05 2.23 6.56 -2.38 -0.02 2.22 16 10 C 0.01 0.37 2.89 29.85 0.09 0.45 16 11 C -0.52 -31.10 8.48 25.60 0.22 -30.88 16 12 H 0.04 2.40 7.59 -2.91 -0.02 2.38 16 13 C 0.00 0.24 5.47 84.66 0.46 0.70 16 14 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 15 Si 0.95 47.17 27.47 68.60 1.88 49.05 16 16 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.25 -12.28 6.54 99.48 0.65 -11.63 16 18 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 19 C -0.10 -3.86 4.93 30.39 0.15 -3.71 16 20 C 0.08 2.82 4.94 88.12 0.44 3.26 16 21 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 22 H 0.07 1.38 7.94 -2.38 -0.02 1.36 16 23 H 0.09 1.41 7.97 -2.39 -0.02 1.39 16 24 H 0.10 1.78 7.71 -2.39 -0.02 1.76 16 25 H 0.03 0.84 6.66 -2.39 -0.02 0.82 16 26 H 0.08 2.00 7.25 -2.39 -0.02 1.99 16 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.39 7.94 9.05 -74.05 -0.67 7.27 16 29 H 0.02 0.85 6.62 -2.38 -0.02 0.84 16 30 H 0.00 0.15 7.57 -2.39 -0.02 0.14 16 31 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 32 H 0.05 2.41 6.48 -2.39 -0.02 2.39 16 33 H 0.07 2.57 7.10 -2.39 -0.02 2.56 16 34 H 0.07 2.24 7.87 -2.38 -0.02 2.22 16 35 H 0.00 0.06 7.54 -2.39 -0.02 0.04 16 Total: -1.00 -71.07 266.19 0.04 -71.03 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.34 Total: 9.35 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.25 Total: -28.57 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -3.64 Total: -80.45 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.79 Total: -20.42 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.88 Total: 49.05 kcal Total: -71.07 0.04 -71.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.119 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds