Wall clock time and date at job start Mon Mar 30 2020 20:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47801 * 110.99807 * 2 1 4 4 C 1.45868 * 112.91570 * 153.88098 * 3 2 1 5 5 C 1.54501 * 111.59795 * 61.32807 * 4 3 2 6 6 C 1.50455 * 108.85151 * 282.80861 * 5 4 3 7 7 C 1.54291 * 113.03295 * 92.14974 * 6 5 4 8 8 H 1.08997 * 108.91929 * 79.02473 * 7 6 5 9 9 O 1.42898 * 108.92100 * 197.57884 * 7 6 5 10 10 C 1.44275 * 110.99513 * 238.03335 * 2 1 3 11 11 H 1.09001 * 108.97698 * 98.74162 * 10 2 1 12 12 C 1.52994 * 108.97895 * 339.94562 * 10 2 1 13 13 C 1.50701 * 109.46956 * 177.53359 * 12 10 2 14 14 H 1.08001 * 120.00118 * 355.06868 * 13 12 10 15 15 C 1.37880 * 119.99834 * 175.06473 * 13 12 10 16 16 N 1.31512 * 119.99941 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00252 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46918 * 89.99988 * 17 15 13 19 19 H 1.48498 * 109.47304 * 209.99871 * 17 15 13 20 20 H 1.48501 * 109.46902 * 330.00052 * 17 15 13 21 21 H 1.09003 * 109.47133 * 187.00484 * 1 2 3 22 22 H 1.09003 * 109.46714 * 307.00145 * 1 2 3 23 23 H 1.08992 * 109.47378 * 67.00235 * 1 2 3 24 24 H 1.08995 * 108.79583 * 274.76647 * 3 2 1 25 25 H 1.08996 * 108.79347 * 32.99494 * 3 2 1 26 26 H 1.09001 * 109.05176 * 181.87292 * 4 3 2 27 27 H 1.09002 * 109.05427 * 300.85015 * 4 3 2 28 28 H 1.09003 * 109.57089 * 42.61906 * 5 4 3 29 29 H 1.09005 * 109.57686 * 162.86744 * 5 4 3 30 30 H 1.08996 * 108.77595 * 213.06459 * 6 5 4 31 31 H 1.09006 * 108.77042 * 331.35539 * 6 5 4 32 32 H 0.96703 * 113.99806 * 302.77141 * 9 7 6 33 33 H 1.08995 * 109.47278 * 57.53567 * 12 10 2 34 34 H 1.09005 * 109.47556 * 297.53629 * 12 10 2 35 35 H 0.97003 * 120.00479 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3799 0.0000 4 6 3.3284 1.4778 0.5915 5 6 4.3624 0.6382 -0.1914 6 6 4.1836 -0.8118 0.1682 7 6 3.2247 -1.5562 -0.7842 8 1 3.7597 -1.8054 -1.7006 9 8 2.7958 -2.7664 -0.1571 10 6 1.9859 -0.7131 -1.1427 11 1 2.2592 0.0057 -1.9152 12 6 0.8954 -1.6377 -1.6872 13 6 1.4036 -2.3435 -2.9180 14 1 2.3734 -2.0935 -3.3221 15 6 0.6304 -3.3084 -3.5280 16 7 1.0737 -3.9240 -4.6023 17 14 -1.0473 -3.7405 -2.8294 18 1 -2.0804 -2.8735 -3.4508 19 1 -1.3539 -5.1636 -3.1223 20 1 -1.0412 -3.5277 -1.3597 21 1 -0.3633 -1.0200 0.1253 22 1 -0.3633 0.6185 0.8208 23 1 -0.3634 0.4015 -0.9459 24 1 2.0444 1.7384 -1.0283 25 1 1.3165 2.0178 0.5619 26 1 3.6427 2.5216 0.5895 27 1 3.2874 1.1208 1.6205 28 1 4.2053 0.7710 -1.2619 29 1 5.3697 0.9604 0.0726 30 1 5.1564 -1.3026 0.1405 31 1 3.7879 -0.8756 1.1818 32 1 3.5195 -3.3541 0.0998 33 1 0.0146 -1.0491 -1.9436 34 1 0.6316 -2.3747 -0.9286 35 1 0.5300 -4.6031 -5.0314 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260763194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:20 Heat of formation + Delta-G solvation = -68.037116 kcal Electronic energy + Delta-G solvation = -15533.626663 eV Core-core repulsion = 13144.644764 eV Total energy + Delta-G solvation = -2388.981898 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74836 -37.17656 -35.98651 -34.62908 -32.65452 -30.30790 -28.51955 -25.93318 -24.97219 -22.90382 -21.45461 -20.08263 -19.07636 -17.85568 -16.91985 -16.70159 -16.13942 -15.93094 -14.85604 -14.71622 -14.30680 -14.29180 -14.11319 -14.03800 -13.39326 -13.10581 -12.82347 -12.51747 -12.31555 -12.11372 -11.90191 -11.71606 -11.50979 -11.26554 -11.19463 -10.88682 -10.71822 -10.47587 -9.13544 -8.26308 -6.26346 1.31516 1.35343 1.47913 2.37297 3.06917 3.09560 3.56985 3.84924 3.98214 4.18999 4.33019 4.34754 4.42515 4.48322 4.62073 4.64490 4.79282 4.83434 4.95148 5.03992 5.06537 5.13332 5.18863 5.32926 5.40000 5.43738 5.47592 5.57889 5.69905 6.15601 6.33705 6.38606 6.77782 7.16215 7.36086 8.90345 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038260 B = 0.010745 C = 0.009512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.655454 B = 2605.230040 C = 2942.934359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.532 5.532 3 C 0.047 3.953 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.133 4.133 7 C 0.133 3.867 8 H 0.021 0.979 9 O -0.567 6.567 10 C 0.109 3.891 11 H 0.034 0.966 12 C -0.007 4.007 13 C -0.505 4.505 14 H 0.031 0.969 15 C 0.006 3.994 16 N -0.953 5.953 17 Si 0.943 3.057 18 H -0.267 1.267 19 H -0.285 1.285 20 H -0.253 1.253 21 H 0.053 0.947 22 H 0.087 0.913 23 H 0.021 0.979 24 H 0.024 0.976 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.375 0.625 33 H 0.013 0.987 34 H 0.028 0.972 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 10.242 12.287 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.256 5.256 3 C -0.080 4.080 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.074 3.926 8 H 0.039 0.961 9 O -0.372 6.372 10 C 0.000 4.000 11 H 0.052 0.948 12 C -0.044 4.044 13 C -0.543 4.543 14 H 0.049 0.951 15 C -0.190 4.190 16 N -0.595 5.595 17 Si 0.768 3.232 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.177 1.177 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.039 0.961 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.222 0.778 33 H 0.031 0.969 34 H 0.046 0.954 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.867 10.155 12.508 16.364 hybrid contribution -0.337 -0.584 -1.185 1.364 sum 2.530 9.570 11.323 15.040 Atomic orbital electron populations 1.22466 0.87489 1.01917 1.00175 1.61751 1.07898 1.14209 1.41708 1.21195 0.98337 0.88729 0.99759 1.20592 0.93305 1.00704 1.00016 1.21300 1.00037 0.94275 0.99610 1.21921 0.98179 0.96661 1.00292 1.22052 0.93282 0.84442 0.92871 0.96055 1.86630 1.37372 1.32065 1.81165 1.21200 0.95079 0.94236 0.89455 0.94819 1.19783 0.94612 0.95265 0.94776 1.21273 1.03165 1.19888 1.10019 0.95072 1.25850 1.02262 0.95834 0.95019 1.70055 1.39851 1.27508 1.22048 0.85755 0.79878 0.77454 0.80121 1.19263 1.21054 1.17735 0.92808 0.89462 0.96084 0.95749 0.89785 0.89387 0.91083 0.93688 0.89694 0.91745 0.90914 0.77780 0.96900 0.95367 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 8.20 127.69 1.05 1.95 16 2 N -0.53 -18.37 4.48 -912.27 -4.09 -22.46 16 3 C 0.05 1.26 4.96 83.94 0.42 1.68 16 4 C -0.11 -2.43 5.53 28.92 0.16 -2.27 16 5 C -0.11 -2.86 5.60 30.28 0.17 -2.69 16 6 C -0.13 -3.85 5.01 30.21 0.15 -3.70 16 7 C 0.13 5.24 2.80 31.39 0.09 5.33 16 8 H 0.02 0.95 7.34 -2.39 -0.02 0.94 16 9 O -0.57 -23.37 11.77 -148.98 -1.75 -25.12 16 10 C 0.11 4.58 1.72 45.77 0.08 4.66 16 11 H 0.03 1.48 6.50 -2.39 -0.02 1.47 16 12 C -0.01 -0.34 1.91 29.85 0.06 -0.28 16 13 C -0.50 -30.02 8.92 25.60 0.23 -29.79 16 14 H 0.03 2.02 7.26 -2.91 -0.02 2.00 16 15 C 0.01 0.38 5.47 84.66 0.46 0.85 16 16 N -0.95 -61.37 13.96 21.45 0.30 -61.07 16 17 Si 0.94 46.80 27.57 68.60 1.89 48.69 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 20 H -0.25 -12.09 6.40 99.48 0.64 -11.46 16 21 H 0.05 1.99 6.63 -2.39 -0.02 1.97 16 22 H 0.09 2.24 7.87 -2.39 -0.02 2.23 16 23 H 0.02 0.71 6.99 -2.39 -0.02 0.69 16 24 H 0.02 0.70 7.24 -2.39 -0.02 0.69 16 25 H 0.08 1.87 7.63 -2.39 -0.02 1.86 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 28 H 0.04 1.28 7.15 -2.39 -0.02 1.26 16 29 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.13 7.37 -2.38 -0.02 2.11 16 32 H 0.38 11.86 9.05 -74.06 -0.67 11.19 16 33 H 0.01 0.63 5.72 -2.39 -0.01 0.62 16 34 H 0.03 1.49 5.34 -2.38 -0.01 1.47 16 35 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -70.35 260.91 -0.46 -70.81 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.33 Total: 13.42 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 2.86 Total: -24.27 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.79 Total: -83.53 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.75 Total: -25.12 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.89 Total: 48.69 kcal Total: -70.35 -0.46 -70.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260763194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.776 kcal (2) G-P(sol) polarization free energy of solvation -70.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds