Wall clock time and date at job start Mon Mar 30 2020 20:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47630 * 111.00056 * 2 1 4 4 C 1.50820 * 108.04412 * 150.32711 * 3 2 1 5 5 C 1.53817 * 111.62021 * 95.06578 * 4 3 2 6 6 C 1.54177 * 111.96867 * 319.04579 * 5 4 3 7 7 C 1.50757 * 112.61134 * 318.48639 * 6 5 4 8 8 H 1.08996 * 109.54315 * 333.14355 * 7 6 5 9 9 O 1.42900 * 109.54318 * 212.87711 * 7 6 5 10 10 C 1.39781 * 111.00013 * 231.10343 * 2 1 3 11 11 H 1.09009 * 109.02132 * 68.62001 * 10 2 1 12 12 C 1.53000 * 109.02221 * 309.72318 * 10 2 1 13 13 C 1.50697 * 109.46780 * 301.69659 * 12 10 2 14 14 H 1.07997 * 120.00270 * 355.12925 * 13 12 10 15 15 C 1.37875 * 119.99975 * 175.12601 * 13 12 10 16 16 N 1.31519 * 120.00381 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00255 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47286 * 179.97438 * 17 15 13 19 19 H 1.48504 * 109.47148 * 300.00059 * 17 15 13 20 20 H 1.48503 * 109.46916 * 59.99944 * 17 15 13 21 21 H 1.09001 * 109.46768 * 195.75555 * 1 2 3 22 22 H 1.09004 * 109.46553 * 315.75155 * 1 2 3 23 23 H 1.09000 * 109.47353 * 75.75224 * 1 2 3 24 24 H 1.08999 * 109.75412 * 269.96573 * 3 2 1 25 25 H 1.09007 * 109.74749 * 30.64372 * 3 2 1 26 26 H 1.08995 * 109.05226 * 215.61871 * 4 3 2 27 27 H 1.09005 * 109.04680 * 334.51328 * 4 3 2 28 28 H 1.08994 * 108.98270 * 79.68306 * 5 4 3 29 29 H 1.09003 * 108.98132 * 198.49014 * 5 4 3 30 30 H 1.08999 * 108.85541 * 79.29618 * 6 5 4 31 31 H 1.08998 * 108.85509 * 197.67980 * 6 5 4 32 32 H 0.96701 * 113.99855 * 60.44495 * 9 7 6 33 33 H 1.09000 * 109.47105 * 181.69813 * 12 10 2 34 34 H 1.09001 * 109.47364 * 61.69690 * 12 10 2 35 35 H 0.96995 * 120.00582 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9981 1.3782 0.0000 4 6 3.3287 1.3678 0.7099 5 6 4.4983 1.2355 -0.2803 6 6 4.1922 0.2237 -1.4026 7 6 3.4971 -1.0136 -0.8938 8 1 3.7617 -1.1770 0.1508 9 8 3.8991 -2.1422 -1.6727 10 6 1.9699 -0.8194 -1.0156 11 1 1.7465 -0.3653 -1.9811 12 6 1.2856 -2.1856 -0.9372 13 6 1.5310 -2.7931 0.4199 14 1 2.1805 -2.2956 1.1248 15 6 0.9261 -3.9839 0.7617 16 7 0.1345 -4.5896 -0.0964 17 14 1.2295 -4.7366 2.4442 18 1 0.4688 -6.0064 2.5630 19 1 2.6797 -5.0104 2.6098 20 1 0.7809 -3.7910 3.4977 21 1 -0.3633 -0.9891 0.2791 22 1 -0.3632 0.7362 0.7171 23 1 -0.3634 0.2529 -0.9960 24 1 2.1307 1.7220 -1.0258 25 1 1.3060 2.0384 0.5229 26 1 3.4402 2.2960 1.2703 27 1 3.3544 0.5287 1.4052 28 1 4.6974 2.2099 -0.7261 29 1 5.3852 0.9055 0.2607 30 1 3.5566 0.7042 -2.1463 31 1 5.1283 -0.0687 -1.8783 32 1 4.8486 -2.3230 -1.6422 33 1 1.6928 -2.8406 -1.7075 34 1 0.2136 -2.0645 -1.0927 35 1 -0.2913 -5.4272 0.1442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260763198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:34 Heat of formation + Delta-G solvation = -44.479818 kcal Electronic energy + Delta-G solvation = -15579.155668 eV Core-core repulsion = 13191.195291 eV Total energy + Delta-G solvation = -2387.960377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.36164 -35.77455 -34.36043 -32.43769 -30.63262 -27.97082 -26.89009 -24.34325 -23.29764 -22.01284 -19.30334 -19.13458 -16.74245 -15.92329 -15.25211 -14.81020 -14.54672 -14.09368 -13.92784 -13.17519 -13.00001 -12.60592 -12.04096 -11.78190 -11.77969 -11.39915 -11.03962 -10.83584 -10.58742 -10.50344 -10.41548 -10.24189 -10.10114 -9.78776 -9.20852 -8.93513 -8.73439 -8.14243 -7.31345 -5.78091 -3.74159 3.45366 3.49146 3.52175 4.46039 4.64494 5.04596 5.10682 5.18987 5.42660 5.52370 5.59163 5.67694 5.84126 5.94095 5.99957 6.06223 6.13709 6.18723 6.26302 6.37464 6.39607 6.52624 6.68215 6.85513 6.95388 6.98323 7.75920 7.86105 8.01777 8.17235 8.40387 8.45713 8.70697 9.30148 9.85154 11.34225 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032178 B = 0.010962 C = 0.010304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.961734 B = 2553.604257 C = 2716.851279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.533 5.533 3 C 0.059 3.941 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.155 4.155 7 C 0.123 3.877 8 H 0.065 0.935 9 O -0.548 6.548 10 C 0.120 3.880 11 H 0.000 1.000 12 C 0.026 3.974 13 C -0.475 4.475 14 H 0.058 0.942 15 C 0.049 3.951 16 N -0.905 5.905 17 Si 0.887 3.113 18 H -0.292 1.292 19 H -0.281 1.281 20 H -0.280 1.280 21 H 0.094 0.906 22 H 0.049 0.951 23 H 0.010 0.990 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.361 0.639 33 H 0.030 0.970 34 H 0.018 0.982 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 11.207 -0.312 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.258 5.258 3 C -0.068 4.068 4 C -0.158 4.158 5 C -0.149 4.149 6 C -0.193 4.193 7 C 0.064 3.936 8 H 0.083 0.917 9 O -0.351 6.351 10 C 0.010 3.990 11 H 0.018 0.982 12 C -0.011 4.011 13 C -0.514 4.514 14 H 0.076 0.924 15 C -0.150 4.150 16 N -0.546 5.546 17 Si 0.716 3.284 18 H -0.218 1.218 19 H -0.207 1.207 20 H -0.205 1.205 21 H 0.113 0.887 22 H 0.068 0.932 23 H 0.029 0.971 24 H 0.049 0.951 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.206 0.794 33 H 0.048 0.952 34 H 0.036 0.964 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.698 10.826 -0.072 12.234 hybrid contribution 0.545 -0.034 0.277 0.612 sum 6.243 10.793 0.205 12.470 Atomic orbital electron populations 1.22337 0.86457 1.03857 0.98046 1.58469 1.07758 1.09209 1.50347 1.21853 0.96123 0.90294 0.98565 1.21448 0.93843 1.02047 0.98500 1.21835 0.98263 0.98222 0.96626 1.22328 1.00555 0.97906 0.98529 1.21391 0.94659 0.83106 0.94444 0.91698 1.86662 1.27183 1.49202 1.72017 1.20354 0.92761 0.96736 0.89129 0.98238 1.19316 0.94757 0.88910 0.98105 1.21018 1.26507 1.04638 0.99197 0.92382 1.24980 0.95997 0.97403 0.96595 1.69959 1.32034 1.17713 1.34928 0.86752 0.77965 0.78317 0.85406 1.21795 1.20663 1.20540 0.88716 0.93180 0.97131 0.95093 0.91641 0.92594 0.90159 0.92853 0.92507 0.92435 0.92375 0.79417 0.95221 0.96353 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 8.59 60.06 0.52 1.29 16 2 N -0.53 -10.53 3.50 -239.93 -0.84 -11.37 16 3 C 0.06 0.93 5.36 -4.52 -0.02 0.91 16 4 C -0.12 -1.73 5.41 -27.40 -0.15 -1.87 16 5 C -0.11 -1.48 5.91 -25.69 -0.15 -1.63 16 6 C -0.16 -2.38 5.05 -27.24 -0.14 -2.52 16 7 C 0.12 2.39 2.30 -27.11 -0.06 2.33 16 8 H 0.07 1.35 6.39 -51.93 -0.33 1.01 16 9 O -0.55 -11.09 11.83 -35.23 -0.42 -11.51 16 10 C 0.12 2.61 1.57 -70.63 -0.11 2.50 16 11 H 0.00 0.00 7.54 -51.92 -0.39 -0.39 16 12 C 0.03 0.69 3.86 -27.88 -0.11 0.59 16 13 C -0.47 -13.36 7.52 -34.44 -0.26 -13.62 16 14 H 0.06 1.63 6.91 -52.49 -0.36 1.27 16 15 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 16 N -0.91 -27.75 13.29 55.43 0.74 -27.01 16 17 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H 0.09 2.15 6.00 -51.93 -0.31 1.84 16 22 H 0.05 0.82 7.64 -51.93 -0.40 0.43 16 23 H 0.01 0.19 8.10 -51.93 -0.42 -0.23 16 24 H 0.03 0.48 6.66 -51.93 -0.35 0.14 16 25 H 0.07 0.93 7.51 -51.92 -0.39 0.54 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.33 7.26 -51.93 -0.38 0.95 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 31 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 32 H 0.36 5.41 8.94 45.56 0.41 5.82 16 33 H 0.03 0.87 7.17 -51.93 -0.37 0.50 16 34 H 0.02 0.51 6.36 -51.93 -0.33 0.18 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 264.16 15.07 3.98 3.98 Total: -1.00 -31.53 264.16 -6.92 -38.44 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.78 Total: 0.86 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.58 Total: -10.71 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.10 Total: -38.38 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.42 Total: -11.51 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.53 -6.92 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260763198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.036 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds