Wall clock time and date at job start Mon Mar 30 2020 20:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47636 * 111.00034 * 2 1 4 4 C 1.50816 * 108.03373 * 150.30768 * 3 2 1 5 5 C 1.53817 * 111.61767 * 95.07189 * 4 3 2 6 6 C 1.54170 * 111.96820 * 319.04119 * 5 4 3 7 7 C 1.50755 * 112.61985 * 318.48454 * 6 5 4 8 8 H 1.09002 * 109.61188 * 333.09523 * 7 6 5 9 9 O 1.42890 * 109.54553 * 212.87343 * 7 6 5 10 10 C 1.42901 * 114.00075 * 150.43527 * 9 7 6 11 11 C 1.50703 * 109.47307 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99603 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 C 1.39783 * 111.00412 * 231.09644 * 2 1 3 20 20 H 1.09000 * 109.47287 * 188.90293 * 1 2 3 21 21 H 1.08996 * 109.47687 * 308.90858 * 1 2 3 22 22 H 1.09001 * 109.47351 * 68.90821 * 1 2 3 23 23 H 1.08994 * 109.74785 * 269.94513 * 3 2 1 24 24 H 1.08997 * 109.74312 * 30.62702 * 3 2 1 25 25 H 1.09004 * 109.04858 * 215.61968 * 4 3 2 26 26 H 1.09006 * 109.05443 * 334.52090 * 4 3 2 27 27 H 1.08997 * 108.97868 * 79.68078 * 5 4 3 28 28 H 1.08993 * 108.98195 * 198.48439 * 5 4 3 29 29 H 1.08998 * 108.85694 * 197.66997 * 6 5 4 30 30 H 1.09004 * 108.85089 * 79.29353 * 6 5 4 31 31 H 1.09005 * 109.47211 * 60.00193 * 10 9 7 32 32 H 1.08998 * 109.47189 * 300.00217 * 10 9 7 33 33 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 34 34 H 1.09001 * 109.02444 * 68.54402 * 19 2 1 35 35 H 1.09005 * 109.01540 * 309.72181 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9980 1.3783 0.0000 4 6 3.3284 1.3677 0.7104 5 6 4.4983 1.2353 -0.2795 6 6 4.1924 0.2235 -1.4018 7 6 3.4972 -1.0137 -0.8935 8 1 3.7614 -1.1788 0.1511 9 8 3.8993 -2.1422 -1.6723 10 6 3.8816 -3.3787 -0.9563 11 6 4.3215 -4.4942 -1.8692 12 1 4.5883 -4.2802 -2.8935 13 6 4.3832 -5.7880 -1.3965 14 7 4.0587 -6.0486 -0.1490 15 14 4.9292 -7.1705 -2.5278 16 1 5.2371 -6.6183 -3.8715 17 1 3.8411 -8.1746 -2.6433 18 1 6.1428 -7.8180 -1.9683 19 6 1.9700 -0.8195 -1.0155 20 1 -0.3634 -1.0153 0.1590 21 1 -0.3634 0.6454 0.7996 22 1 -0.3634 0.3698 -0.9588 23 1 2.1309 1.7218 -1.0258 24 1 1.3058 2.0384 0.5226 25 1 3.4398 2.2960 1.2708 26 1 3.3539 0.5286 1.4056 27 1 4.6975 2.2098 -0.7252 28 1 5.3849 0.9053 0.2617 29 1 5.1286 -0.0687 -1.8774 30 1 3.5570 0.7042 -2.1457 31 1 2.8708 -3.5777 -0.5998 32 1 4.5609 -3.3161 -0.1062 33 1 3.7755 -5.3305 0.4386 34 1 1.7454 -0.3663 -1.9811 35 1 1.4824 -1.7929 -0.9594 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:42 Heat of formation + Delta-G solvation = -55.931465 kcal Electronic energy + Delta-G solvation = -14872.973659 eV Core-core repulsion = 12484.516701 eV Total energy + Delta-G solvation = -2388.456958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43845 -36.47557 -34.26312 -32.97618 -30.73699 -27.65786 -26.62833 -24.92952 -23.59665 -22.41752 -20.60705 -19.30119 -16.95068 -16.36606 -15.50295 -15.28832 -14.85038 -14.28872 -13.75599 -13.59946 -13.37914 -13.23326 -12.42820 -12.24547 -12.04891 -11.85924 -11.29952 -11.24528 -10.97975 -10.77072 -10.64527 -10.57510 -10.22562 -10.10835 -9.83019 -8.84858 -8.59726 -8.22909 -8.05356 -6.44304 -4.12853 3.43789 3.48267 3.63251 3.96979 4.47361 4.75004 4.90432 5.10248 5.11335 5.22440 5.32466 5.33703 5.42641 5.56745 5.61279 5.67618 5.84040 5.87807 5.92311 5.99268 6.08810 6.17679 6.30205 6.43056 6.53683 6.56261 6.84818 7.18321 7.21829 7.49191 7.94959 8.22338 8.67524 8.84136 9.58033 10.96102 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.044778 B = 0.006958 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.150993 B = 4022.891042 C = 4325.428585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.557 5.557 3 C 0.064 3.936 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.092 3.908 8 H 0.062 0.938 9 O -0.381 6.381 10 C 0.188 3.812 11 C -0.597 4.597 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.912 5.912 15 Si 1.084 2.916 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.054 3.946 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.022 0.978 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.056 0.944 31 H -0.004 1.004 32 H -0.005 1.005 33 H 0.268 0.732 34 H 0.021 0.979 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.994 14.573 0.878 15.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.282 5.282 3 C -0.063 4.063 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.157 4.157 7 C 0.033 3.967 8 H 0.080 0.920 9 O -0.300 6.300 10 C 0.113 3.887 11 C -0.636 4.636 12 H 0.079 0.921 13 C -0.187 4.187 14 N -0.548 5.548 15 Si 0.911 3.089 16 H -0.213 1.213 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.076 4.076 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.496 12.743 0.992 13.252 hybrid contribution -0.715 1.981 -0.349 2.135 sum -4.211 14.724 0.643 15.328 Atomic orbital electron populations 1.22333 0.86927 1.02446 0.99795 1.58753 1.07308 1.12038 1.50098 1.21831 0.96404 0.88464 0.99566 1.21451 0.93673 1.02221 0.98606 1.21870 0.98223 0.98445 0.96574 1.21491 1.01617 0.94629 0.97979 1.21630 0.91456 0.87771 0.95845 0.92032 1.87920 1.87111 1.15834 1.39089 1.20321 0.94581 0.81069 0.92735 1.21977 1.49319 0.92767 0.99494 0.92129 1.25928 0.94863 0.99359 0.98515 1.70732 1.42028 1.36461 1.05584 0.83345 0.76668 0.74558 0.74316 1.21301 1.21174 1.21146 1.21450 0.97433 0.97278 0.91397 0.91400 0.91625 0.95953 0.94002 0.91221 0.92049 0.90496 0.92254 0.91993 0.90856 0.92485 0.98644 0.98709 0.92171 0.96143 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.46 60.06 0.57 0.98 16 2 N -0.56 -8.35 4.19 -248.33 -1.04 -9.39 16 3 C 0.06 0.80 5.37 -4.52 -0.02 0.78 16 4 C -0.12 -1.49 5.41 -27.40 -0.15 -1.64 16 5 C -0.11 -1.47 5.91 -25.69 -0.15 -1.62 16 6 C -0.12 -1.94 5.06 -27.24 -0.14 -2.08 16 7 C 0.09 1.82 2.32 -27.10 -0.06 1.76 16 8 H 0.06 1.26 6.77 -51.93 -0.35 0.91 16 9 O -0.38 -9.56 9.87 -35.23 -0.35 -9.91 16 10 C 0.19 5.25 4.79 36.01 0.17 5.43 16 11 C -0.60 -18.15 9.43 -34.44 -0.32 -18.48 16 12 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 13 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 14 N -0.91 -28.40 13.65 55.43 0.76 -27.64 16 15 Si 1.08 25.95 29.90 -169.99 -5.08 20.87 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.05 0.97 4.58 -6.74 -0.03 0.94 16 20 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 21 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 22 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.04 0.53 6.66 -51.93 -0.35 0.18 16 24 H 0.07 0.73 7.62 -51.93 -0.40 0.33 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.08 7.27 -51.93 -0.38 0.71 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 30 H 0.06 0.88 6.58 -51.93 -0.34 0.54 16 31 H 0.00 -0.12 7.60 -51.93 -0.39 -0.51 16 32 H 0.00 -0.14 7.95 -51.93 -0.41 -0.55 16 33 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 34 H 0.02 0.36 7.55 -51.93 -0.39 -0.03 16 35 H 0.08 1.50 7.48 -51.93 -0.39 1.11 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -32.06 273.66 -7.66 -39.72 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.83 Total: -4.21 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.24 Total: -13.56 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.28 Total: -37.03 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.35 Total: -9.91 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.06 -7.66 -39.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.210 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds