Wall clock time and date at job start Mon Mar 30 2020 20:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46850 * 110.99922 * 2 1 4 4 C 1.53042 * 109.52544 * 174.16106 * 3 2 1 5 5 C 1.53122 * 109.27553 * 59.17861 * 4 3 2 6 6 C 1.53120 * 109.15842 * 302.34614 * 5 4 3 7 7 C 1.46844 * 111.00233 * 235.79192 * 2 1 3 8 8 H 1.09003 * 109.46565 * 65.82772 * 7 2 1 9 9 C 1.53000 * 109.45733 * 305.85388 * 7 2 1 10 10 O 1.42894 * 109.47292 * 296.06657 * 9 7 2 11 11 C 1.42899 * 114.00250 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47385 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99692 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00178 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99904 * 0.26765 * 14 12 11 16 16 Si 1.86795 * 120.00108 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46817 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47063 * 119.99560 * 16 14 12 19 19 H 1.48501 * 109.47370 * 239.99877 * 16 14 12 20 20 H 1.08996 * 109.47286 * 190.77797 * 1 2 3 21 21 H 1.09002 * 109.47156 * 310.77265 * 1 2 3 22 22 H 1.08995 * 109.47247 * 70.77492 * 1 2 3 23 23 H 1.09001 * 109.46304 * 294.17840 * 3 2 1 24 24 H 1.09000 * 109.46536 * 54.15584 * 3 2 1 25 25 H 1.08998 * 109.50506 * 179.11929 * 4 3 2 26 26 H 1.08997 * 109.50038 * 299.23754 * 4 3 2 27 27 H 1.08993 * 109.52287 * 62.25408 * 5 4 3 28 28 H 1.09005 * 109.51954 * 182.44675 * 5 4 3 29 29 H 1.09001 * 109.50417 * 297.70978 * 6 5 4 30 30 H 1.08999 * 109.49921 * 177.60055 * 6 5 4 31 31 H 1.09007 * 109.46795 * 176.07153 * 9 7 2 32 32 H 1.08998 * 109.47534 * 56.07484 * 9 7 2 33 33 H 1.09002 * 109.47469 * 60.00459 * 11 10 9 34 34 H 1.09000 * 109.46958 * 300.00223 * 11 10 9 35 35 H 0.97005 * 119.99890 * 359.73088 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0208 7 6 1.9953 -0.7707 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3891 -2.1754 -1.1203 10 8 1.8082 -2.8638 0.0597 11 6 1.2952 -4.1930 0.1704 12 6 1.7976 -4.8209 1.4449 13 1 2.4444 -4.2610 2.1043 14 6 1.4324 -6.1104 1.7688 15 7 0.6499 -6.7943 0.9628 16 14 2.0557 -6.8889 3.3482 17 1 2.9193 -5.9203 4.0702 18 1 0.9019 -7.2594 4.2064 19 1 2.8421 -8.1061 3.0235 20 1 -0.3634 -1.0095 0.1922 21 1 -0.3633 0.6711 0.7783 22 1 -0.3633 0.3384 -0.9703 23 1 1.7324 1.8609 -0.9376 24 1 1.5635 1.9257 0.8331 25 1 3.9099 2.3513 0.1310 26 1 3.7813 0.8569 1.0906 27 1 3.8887 1.0355 -1.9560 28 1 5.1998 0.4715 -0.8905 29 1 3.7814 -1.3835 -0.0953 30 1 3.9099 -1.4302 -1.8707 31 1 1.7251 -2.7246 -2.0000 32 1 0.3016 -2.1021 -1.1313 33 1 1.6296 -4.7838 -0.6824 34 1 0.2057 -4.1618 0.1860 35 1 0.3265 -6.3901 0.1424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:50 Heat of formation + Delta-G solvation = -59.693352 kcal Electronic energy + Delta-G solvation = -14825.616220 eV Core-core repulsion = 12436.996135 eV Total energy + Delta-G solvation = -2388.620086 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17066 -36.38790 -33.42058 -32.96798 -31.28150 -27.21781 -26.40291 -25.20858 -22.73285 -22.44343 -21.07021 -19.35515 -16.94622 -15.94235 -15.44434 -15.24641 -14.44409 -14.19221 -14.05879 -13.70237 -13.31572 -12.87138 -12.74723 -12.15748 -11.86807 -11.58181 -11.49900 -11.39143 -10.99019 -10.69614 -10.55033 -10.48912 -10.19939 -10.08412 -9.76714 -8.76013 -8.57297 -8.16997 -8.01732 -6.41773 -4.09348 3.45900 3.50269 3.65832 4.06627 4.48391 4.78870 4.91037 5.01049 5.04253 5.32281 5.36161 5.43978 5.54581 5.58784 5.64504 5.70936 5.79261 5.91033 5.99249 6.01084 6.08304 6.14915 6.22731 6.30862 6.36416 6.74329 6.82155 7.18555 7.33053 7.35397 7.97820 8.25416 8.72254 8.87956 9.61294 10.98637 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041503 B = 0.006896 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.483044 B = 4059.129268 C = 4198.491837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.525 5.525 3 C 0.057 3.943 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.110 4.110 7 C 0.094 3.906 8 H 0.041 0.959 9 C 0.064 3.936 10 O -0.366 6.366 11 C 0.184 3.816 12 C -0.590 4.590 13 H 0.062 0.938 14 C 0.015 3.985 15 N -0.915 5.915 16 Si 1.083 2.917 17 H -0.287 1.287 18 H -0.286 1.286 19 H -0.286 1.286 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.017 0.983 23 H 0.025 0.975 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.037 0.963 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 15.008 -4.427 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.250 5.250 3 C -0.071 4.071 4 C -0.155 4.155 5 C -0.158 4.158 6 C -0.147 4.147 7 C -0.014 4.014 8 H 0.059 0.941 9 C -0.015 4.015 10 O -0.285 6.285 11 C 0.109 3.891 12 C -0.629 4.629 13 H 0.080 0.920 14 C -0.188 4.188 15 N -0.552 5.552 16 Si 0.911 3.089 17 H -0.212 1.212 18 H -0.212 1.212 19 H -0.212 1.212 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.036 0.964 23 H 0.043 0.957 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.103 13.479 -2.947 14.142 hybrid contribution -0.588 1.673 -2.049 2.709 sum 2.515 15.151 -4.996 16.151 Atomic orbital electron populations 1.22390 0.87551 1.03086 0.99214 1.61779 1.07297 1.12317 1.43586 1.22087 0.95771 0.89558 0.99690 1.21583 0.94500 0.99531 0.99863 1.21595 0.99879 0.96358 0.97933 1.21534 0.93241 0.96256 1.03701 1.21675 0.95936 0.92982 0.90816 0.94146 1.22382 0.97205 0.91786 0.90081 1.87985 1.72633 1.28727 1.39128 1.20272 0.92813 0.78785 0.97190 1.21960 1.33538 1.01048 1.06325 0.92008 1.25926 0.95070 0.93893 1.03878 1.70744 1.32100 1.39719 1.12591 0.83346 0.76042 0.75358 0.74151 1.21233 1.21219 1.21234 0.90531 0.91767 0.96400 0.95721 0.91045 0.92064 0.90771 0.92906 0.91923 0.89375 0.91970 0.94398 0.94456 0.99063 0.99052 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 8.88 60.06 0.53 0.91 16 2 N -0.52 -8.49 4.68 -234.93 -1.10 -9.59 16 3 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 4 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 5 C -0.12 -1.49 6.00 -26.61 -0.16 -1.65 16 6 C -0.11 -1.71 5.20 -26.65 -0.14 -1.85 16 7 C 0.09 1.53 2.22 -67.73 -0.15 1.38 16 8 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.06 1.23 5.15 37.16 0.19 1.42 16 10 O -0.37 -9.07 9.41 -35.23 -0.33 -9.40 16 11 C 0.18 5.15 5.00 36.01 0.18 5.33 16 12 C -0.59 -17.97 9.43 -34.44 -0.32 -18.30 16 13 H 0.06 1.91 7.81 -52.48 -0.41 1.50 16 14 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 15 N -0.91 -28.57 13.65 55.43 0.76 -27.81 16 16 Si 1.08 26.12 29.90 -169.99 -5.08 21.04 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H 0.08 1.30 6.54 -51.93 -0.34 0.96 16 21 H 0.06 0.84 7.97 -51.93 -0.41 0.42 16 22 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 23 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.65 7.56 -51.93 -0.39 1.26 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.04 0.70 6.24 -51.93 -0.32 0.38 16 33 H -0.01 -0.23 8.00 -51.93 -0.42 -0.65 16 34 H -0.01 -0.23 8.01 -51.93 -0.42 -0.65 16 35 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 LS Contribution 278.48 15.07 4.20 4.20 Total: -1.00 -32.36 278.48 -7.73 -40.09 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -6.02 Total: -5.25 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.15 Total: -13.28 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.34 Total: -37.40 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.33 Total: -9.40 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -5.08 Total: 21.04 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.36 -7.73 -40.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.598 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds