Wall clock time and date at job start Mon Mar 30 2020 20:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46850 * 110.99922 * 2 1 4 4 C 1.53042 * 109.52544 * 174.16106 * 3 2 1 5 5 C 1.53122 * 109.27553 * 59.17861 * 4 3 2 6 6 C 1.53120 * 109.15842 * 302.34614 * 5 4 3 7 7 C 1.46844 * 111.00233 * 235.79192 * 2 1 3 8 8 H 1.09003 * 109.46565 * 65.82772 * 7 2 1 9 9 C 1.53000 * 109.45733 * 305.85388 * 7 2 1 10 10 O 1.42894 * 109.47292 * 296.06657 * 9 7 2 11 11 C 1.42899 * 114.00250 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47385 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99692 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00178 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99904 * 0.26765 * 14 12 11 16 16 Si 1.86795 * 120.00108 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46817 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47063 * 119.99560 * 16 14 12 19 19 H 1.48501 * 109.47370 * 239.99877 * 16 14 12 20 20 H 1.08996 * 109.47286 * 190.77797 * 1 2 3 21 21 H 1.09002 * 109.47156 * 310.77265 * 1 2 3 22 22 H 1.08995 * 109.47247 * 70.77492 * 1 2 3 23 23 H 1.09001 * 109.46304 * 294.17840 * 3 2 1 24 24 H 1.09000 * 109.46536 * 54.15584 * 3 2 1 25 25 H 1.08998 * 109.50506 * 179.11929 * 4 3 2 26 26 H 1.08997 * 109.50038 * 299.23754 * 4 3 2 27 27 H 1.08993 * 109.52287 * 62.25408 * 5 4 3 28 28 H 1.09005 * 109.51954 * 182.44675 * 5 4 3 29 29 H 1.09001 * 109.50417 * 297.70978 * 6 5 4 30 30 H 1.08999 * 109.49921 * 177.60055 * 6 5 4 31 31 H 1.09007 * 109.46795 * 176.07153 * 9 7 2 32 32 H 1.08998 * 109.47534 * 56.07484 * 9 7 2 33 33 H 1.09002 * 109.47469 * 60.00459 * 11 10 9 34 34 H 1.09000 * 109.46958 * 300.00223 * 11 10 9 35 35 H 0.97005 * 119.99890 * 359.73088 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0208 7 6 1.9953 -0.7707 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3891 -2.1754 -1.1203 10 8 1.8082 -2.8638 0.0597 11 6 1.2952 -4.1930 0.1704 12 6 1.7976 -4.8209 1.4449 13 1 2.4444 -4.2610 2.1043 14 6 1.4324 -6.1104 1.7688 15 7 0.6499 -6.7943 0.9628 16 14 2.0557 -6.8889 3.3482 17 1 2.9193 -5.9203 4.0702 18 1 0.9019 -7.2594 4.2064 19 1 2.8421 -8.1061 3.0235 20 1 -0.3634 -1.0095 0.1922 21 1 -0.3633 0.6711 0.7783 22 1 -0.3633 0.3384 -0.9703 23 1 1.7324 1.8609 -0.9376 24 1 1.5635 1.9257 0.8331 25 1 3.9099 2.3513 0.1310 26 1 3.7813 0.8569 1.0906 27 1 3.8887 1.0355 -1.9560 28 1 5.1998 0.4715 -0.8905 29 1 3.7814 -1.3835 -0.0953 30 1 3.9099 -1.4302 -1.8707 31 1 1.7251 -2.7246 -2.0000 32 1 0.3016 -2.1021 -1.1313 33 1 1.6296 -4.7838 -0.6824 34 1 0.2057 -4.1618 0.1860 35 1 0.3265 -6.3901 0.1424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112891.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:35:49 Heat of formation + Delta-G solvation = -81.915546 kcal Electronic energy + Delta-G solvation = -14826.579847 eV Core-core repulsion = 12436.996135 eV Total energy + Delta-G solvation = -2389.583712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43642 -38.22151 -35.25098 -34.48765 -32.64433 -29.06753 -27.81779 -26.73174 -24.72807 -23.85246 -22.29096 -20.54836 -19.20201 -17.53771 -17.01631 -16.65264 -15.80828 -15.71278 -15.58883 -15.29281 -14.78855 -14.32801 -14.09378 -13.88371 -13.36575 -13.16521 -13.08338 -12.66836 -12.55659 -12.30581 -12.15342 -11.92170 -11.61040 -11.29571 -11.13043 -10.83920 -10.81601 -10.30533 -9.17643 -8.84343 -6.54400 1.51307 1.61478 1.81165 2.48577 2.88863 3.02769 3.10927 3.77278 3.81010 3.99217 4.15713 4.30942 4.33609 4.38142 4.42988 4.46532 4.53877 4.62517 4.63392 4.81703 4.85518 4.90287 4.98486 5.02605 5.07177 5.26408 5.29696 5.52275 5.68798 5.91795 6.15547 6.24043 6.33843 6.70603 7.26504 8.56833 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041503 B = 0.006896 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.483044 B = 4059.129268 C = 4198.491837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.555 5.555 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.110 4.110 7 C 0.099 3.901 8 H 0.068 0.932 9 C 0.054 3.946 10 O -0.380 6.380 11 C 0.196 3.804 12 C -0.618 4.618 13 H 0.050 0.950 14 C -0.030 4.030 15 N -0.930 5.930 16 Si 1.132 2.868 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.270 1.270 20 H 0.044 0.956 21 H 0.079 0.921 22 H 0.037 0.963 23 H 0.043 0.957 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.041 0.959 33 H -0.021 1.021 34 H -0.023 1.023 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 16.490 -4.389 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.281 5.281 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.148 4.148 7 C -0.009 4.009 8 H 0.085 0.915 9 C -0.024 4.024 10 O -0.299 6.299 11 C 0.121 3.879 12 C -0.656 4.656 13 H 0.069 0.931 14 C -0.227 4.227 15 N -0.566 5.566 16 Si 0.951 3.049 17 H -0.198 1.198 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.063 0.937 21 H 0.098 0.902 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.099 0.901 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.059 0.941 33 H -0.003 1.003 34 H -0.005 1.005 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.727 14.992 -2.939 15.726 hybrid contribution -0.811 1.281 -2.133 2.617 sum 2.916 16.273 -5.071 17.293 Atomic orbital electron populations 1.22326 0.87145 1.01601 1.00861 1.61740 1.08021 1.14490 1.43878 1.22179 0.96066 0.87789 1.01026 1.21607 0.94213 1.00949 0.98625 1.21567 1.00301 0.94136 0.99079 1.21511 0.93193 0.98341 1.01748 1.21641 0.96026 0.90975 0.92259 0.91458 1.22734 0.97874 0.93498 0.88246 1.87949 1.72760 1.27252 1.41926 1.19930 0.91721 0.80363 0.95924 1.22283 1.34069 1.01934 1.07310 0.93115 1.27616 0.94080 0.94390 1.06578 1.70872 1.33101 1.39945 1.12712 0.82766 0.76440 0.75306 0.70349 1.19787 1.19594 1.19553 0.93739 0.90184 0.94465 0.93902 0.90058 0.89026 0.92990 0.90785 0.90858 0.93429 0.91514 0.93770 0.94130 1.00338 1.00517 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.88 127.69 1.13 1.95 16 2 N -0.56 -17.32 4.68 -897.19 -4.20 -21.52 16 3 C 0.06 1.31 5.46 86.33 0.47 1.79 16 4 C -0.12 -2.55 6.09 30.65 0.19 -2.36 16 5 C -0.11 -2.53 6.00 30.68 0.18 -2.35 16 6 C -0.11 -3.35 5.20 30.65 0.16 -3.19 16 7 C 0.10 3.12 2.22 44.94 0.10 3.22 16 8 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 9 C 0.05 2.11 5.15 71.98 0.37 2.48 16 10 O -0.38 -19.48 9.41 -148.98 -1.40 -20.88 16 11 C 0.20 11.38 5.00 71.24 0.36 11.73 16 12 C -0.62 -38.57 9.43 25.60 0.24 -38.33 16 13 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 14 C -0.03 -1.77 5.46 84.66 0.46 -1.31 16 15 N -0.93 -58.71 13.65 21.45 0.29 -58.42 16 16 Si 1.13 51.94 29.90 68.60 2.05 53.99 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H 0.04 1.53 6.54 -2.39 -0.02 1.52 16 21 H 0.08 1.98 7.97 -2.39 -0.02 1.96 16 22 H 0.04 0.90 8.12 -2.39 -0.02 0.88 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 1.72 8.01 -2.39 -0.02 1.70 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.05 1.82 7.56 -2.39 -0.02 1.81 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.04 1.56 6.24 -2.39 -0.01 1.54 16 33 H -0.02 -1.24 8.00 -2.39 -0.02 -1.26 16 34 H -0.02 -1.36 8.01 -2.39 -0.02 -1.38 16 35 H 0.26 16.29 7.22 -92.70 -0.67 15.62 16 Total: -1.00 -70.53 278.48 1.54 -68.99 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.13 Total: 4.20 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 3.67 Total: -26.37 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -3.90 Total: -79.93 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.40 Total: -20.88 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.05 Total: 53.99 kcal Total: -70.53 1.54 -68.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112891.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.923 kcal (2) G-P(sol) polarization free energy of solvation -70.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds