Wall clock time and date at job start Mon Mar 30 2020 20:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 7 7 H 1.08994 * 109.50594 * 62.28334 * 6 5 4 8 8 C 1.53002 * 109.50162 * 182.40845 * 6 5 4 9 9 O 1.42901 * 109.46958 * 184.80084 * 8 6 5 10 10 C 1.42902 * 114.00116 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47169 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00330 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99876 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47363 * 89.99497 * 15 13 11 17 17 H 1.48498 * 109.47379 * 209.99688 * 15 13 11 18 18 H 1.48498 * 109.46919 * 329.99538 * 15 13 11 19 19 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 20 20 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 21 21 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 22 22 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 23 23 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 24 24 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 25 25 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 26 26 H 1.09003 * 109.50006 * 60.76426 * 4 3 2 27 27 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 28 28 H 1.08994 * 109.52278 * 177.55778 * 5 4 3 29 29 H 1.08995 * 109.46589 * 304.79934 * 8 6 5 30 30 H 1.09002 * 109.47197 * 64.80432 * 8 6 5 31 31 H 1.08998 * 109.47175 * 300.00710 * 10 9 8 32 32 H 1.09001 * 109.46593 * 59.99769 * 10 9 8 33 33 H 0.96996 * 120.00394 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.46673 * 294.18102 * 19 2 1 35 35 H 1.09003 * 109.46587 * 54.14643 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 3.5182 -0.8715 1.0210 7 1 3.7813 -1.3836 0.0955 8 6 4.0680 -1.6558 2.2141 9 8 3.5951 -3.0031 2.1571 10 6 4.0535 -3.8259 3.2318 11 6 3.4966 -5.2170 3.0722 12 1 2.8569 -5.4497 2.2337 13 6 3.8046 -6.1931 3.9960 14 7 3.3190 -7.4073 3.8565 15 14 4.9116 -5.7908 5.4459 16 1 4.0835 -5.3224 6.5861 17 1 5.6636 -7.0069 5.8470 18 1 5.8679 -4.7233 5.0572 19 6 1.9952 -0.7707 1.1338 20 1 -0.3634 0.4471 0.9253 21 1 -0.3633 -1.0249 -0.0754 22 1 -0.3633 0.5778 -0.8499 23 1 1.5634 1.9257 -0.8330 24 1 1.7324 1.8608 0.9376 25 1 3.9099 2.3512 -0.1310 26 1 3.7814 0.8568 -1.0905 27 1 3.8886 1.0355 1.9561 28 1 5.1997 0.4715 0.8907 29 1 5.1574 -1.6513 2.1807 30 1 3.7308 -1.1913 3.1408 31 1 5.1427 -3.8664 3.2193 32 1 3.7165 -3.4065 4.1797 33 1 3.5353 -8.0939 4.5067 34 1 1.7324 -0.2708 2.0661 35 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261114851.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:07 Heat of formation + Delta-G solvation = -80.763897 kcal Electronic energy + Delta-G solvation = -14470.701786 eV Core-core repulsion = 12081.168013 eV Total energy + Delta-G solvation = -2389.533773 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23675 -38.41427 -35.13385 -34.56163 -32.48321 -30.10108 -27.77171 -26.62049 -24.09977 -23.60899 -22.49691 -20.65411 -19.07974 -17.34204 -16.94036 -16.72988 -16.35480 -15.83514 -15.46872 -15.27704 -14.80862 -14.33659 -14.21595 -13.65377 -13.53349 -13.17901 -13.03497 -12.80289 -12.72442 -12.28150 -12.00211 -11.83918 -11.60778 -11.43604 -11.29570 -11.21121 -10.93241 -10.37210 -9.29382 -8.38913 -6.47377 1.31968 1.35383 1.46422 2.28150 2.93347 2.93732 3.04867 3.82268 3.88622 4.02816 4.14505 4.31543 4.43675 4.47339 4.50344 4.54448 4.59054 4.68573 4.71852 4.82849 4.86539 4.97046 4.98169 5.00846 5.07706 5.18307 5.31732 5.41725 5.47072 5.92757 6.07960 6.19645 6.56723 6.73422 7.17320 8.78365 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049086 B = 0.006181 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.294275 B = 4528.719464 C = 4913.665501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.051 3.949 4 C -0.111 4.111 5 C -0.109 4.109 6 C -0.077 4.077 7 H 0.068 0.932 8 C 0.057 3.943 9 O -0.407 6.407 10 C 0.179 3.821 11 C -0.548 4.548 12 H 0.028 0.972 13 C 0.013 3.987 14 N -0.942 5.942 15 Si 0.957 3.043 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.245 1.245 19 C 0.070 3.930 20 H 0.027 0.973 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.034 0.966 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.274 0.726 34 H 0.031 0.969 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 20.630 -4.055 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.284 5.284 3 C -0.076 4.076 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.096 4.096 7 H 0.086 0.914 8 C -0.021 4.021 9 O -0.326 6.326 10 C 0.104 3.896 11 C -0.586 4.586 12 H 0.047 0.953 13 C -0.185 4.185 14 N -0.581 5.581 15 Si 0.777 3.223 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.169 1.169 19 C -0.058 4.058 20 H 0.045 0.955 21 H 0.077 0.923 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.052 0.948 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.782 20.165 -4.569 20.691 hybrid contribution -0.094 -0.280 1.432 1.462 sum 0.688 19.885 -3.137 20.143 Atomic orbital electron populations 1.22377 0.86507 1.02251 1.01124 1.61907 1.08526 1.14759 1.43247 1.22230 0.96249 0.88133 1.01012 1.21573 0.93935 1.01006 0.98363 1.21569 1.00664 0.92779 0.99687 1.21127 0.94573 0.96474 0.97429 0.91387 1.22682 0.98185 0.82755 0.98436 1.87876 1.73804 1.21526 1.49440 1.20317 0.93943 0.89114 0.86261 1.21174 1.31544 0.94719 1.11169 0.95317 1.25860 0.97352 0.94084 1.01188 1.70031 1.46255 1.03730 1.38105 0.85593 0.79241 0.79077 0.78346 1.18317 1.19657 1.16870 1.21922 0.95218 0.97414 0.91218 0.95454 0.92325 0.89533 0.89269 0.94755 0.88788 0.91610 0.91333 0.90337 0.92697 0.93347 0.96951 0.97167 0.91732 0.95123 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.59 127.69 1.22 1.79 16 2 N -0.56 -14.63 4.91 -922.54 -4.53 -19.16 16 3 C 0.05 1.01 5.46 86.33 0.47 1.48 16 4 C -0.11 -2.01 6.09 30.65 0.19 -1.82 16 5 C -0.11 -2.33 5.29 30.68 0.16 -2.17 16 6 C -0.08 -2.31 2.59 -10.74 -0.03 -2.34 16 7 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 8 C 0.06 1.98 5.32 71.98 0.38 2.37 16 9 O -0.41 -19.57 9.88 -148.98 -1.47 -21.05 16 10 C 0.18 9.23 4.76 71.23 0.34 9.57 16 11 C -0.55 -34.19 9.99 25.60 0.26 -33.93 16 12 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 13 C 0.01 0.79 5.47 84.65 0.46 1.25 16 14 N -0.94 -60.03 13.96 21.45 0.30 -59.73 16 15 Si 0.96 43.74 27.47 68.60 1.88 45.62 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.25 -10.33 6.54 99.48 0.65 -9.68 16 19 C 0.07 2.18 4.63 86.33 0.40 2.58 16 20 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 22 H 0.09 1.54 8.09 -2.38 -0.02 1.52 16 23 H 0.09 1.44 8.09 -2.38 -0.02 1.42 16 24 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 25 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 32 H 0.01 0.51 7.57 -2.39 -0.02 0.50 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.05 1.97 7.83 -2.39 -0.02 1.96 16 Total: -1.00 -70.39 280.87 1.00 -69.39 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 0.96 Total: 6.14 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.86 Total: -21.21 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -4.23 Total: -78.89 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.47 Total: -21.05 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -70.39 1.00 -69.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261114851.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.377 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds