Wall clock time and date at job start Mon Mar 30 2020 20:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47400 * 2 1 4 4 C 1.46894 * 111.00029 * 179.90938 * 3 2 1 5 5 C 1.50699 * 109.54613 * 303.57980 * 4 3 2 6 6 H 1.07999 * 120.00325 * 124.61936 * 5 4 3 7 7 C 1.37880 * 119.99896 * 304.61630 * 5 4 3 8 8 N 1.31511 * 120.00013 * 354.34943 * 7 5 4 9 9 Si 1.86802 * 120.00025 * 174.34182 * 7 5 4 10 10 H 1.48496 * 109.47041 * 90.00369 * 9 7 5 11 11 H 1.48503 * 109.47033 * 210.00318 * 9 7 5 12 12 H 1.48503 * 109.46986 * 329.99984 * 9 7 5 13 13 C 1.53177 * 109.54605 * 183.40325 * 4 3 2 14 14 C 1.53091 * 109.16746 * 183.15491 * 13 4 3 15 15 O 1.42899 * 109.42498 * 57.59901 * 14 13 4 16 16 C 1.42905 * 114.10063 * 298.86164 * 15 14 13 17 17 H 1.08998 * 109.46770 * 301.15674 * 16 15 14 18 18 C 1.52999 * 109.49012 * 181.13180 * 16 15 14 19 19 C 1.53096 * 109.42159 * 61.14014 * 16 15 14 20 20 H 1.08998 * 109.47081 * 300.00592 * 1 2 3 21 21 H 1.09007 * 109.46306 * 60.00190 * 1 2 3 22 22 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47081 * 239.99408 * 2 1 3 24 24 H 1.09003 * 109.47021 * 119.99684 * 2 1 3 25 25 H 1.00898 * 110.99943 * 55.95728 * 3 2 1 26 26 H 0.97001 * 120.00357 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.52710 * 63.24248 * 13 4 3 28 28 H 1.09008 * 109.51918 * 303.05787 * 13 4 3 29 29 H 1.09000 * 109.48020 * 177.59339 * 14 13 4 30 30 H 1.09002 * 109.47919 * 297.61090 * 14 13 4 31 31 H 1.08998 * 109.47330 * 300.04288 * 18 16 15 32 32 H 1.09000 * 109.46694 * 60.04541 * 18 16 15 33 33 H 1.09002 * 109.46754 * 180.02562 * 18 16 15 34 34 H 1.09000 * 109.52057 * 182.49169 * 19 16 15 35 35 H 1.09000 * 109.57360 * 62.33142 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4241 0.0022 5 6 4.0113 0.6529 1.1865 6 1 4.7147 -0.1531 1.0382 7 6 3.5921 0.9765 2.4596 8 7 2.8239 2.0264 2.6519 9 14 4.1150 -0.0767 3.9110 10 1 5.3899 0.4441 4.4666 11 1 3.0637 -0.0326 4.9589 12 1 4.3071 -1.4789 3.4614 13 6 3.9619 2.8782 0.0878 14 6 5.4905 2.9143 0.0101 15 8 5.9194 2.2917 -1.2026 16 6 5.5457 0.9172 -1.3168 17 1 5.9664 0.3558 -0.4826 18 6 6.0795 0.3508 -2.6341 19 6 4.0193 0.8010 -1.2924 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5139 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6431 1.9016 0.7805 26 1 2.5286 2.2539 3.5475 27 1 3.6349 3.3129 1.0323 28 1 3.5416 3.4477 -0.7412 29 1 5.8310 3.9495 0.0275 30 1 5.9104 2.3791 0.8617 31 1 5.6591 0.9126 -3.4681 32 1 7.1662 0.4336 -2.6512 33 1 5.7938 -0.6975 -2.7210 34 1 3.7333 -0.2500 -1.3349 35 1 3.5992 1.3278 -2.1493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141442.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:27 Heat of formation + Delta-G solvation = -76.453275 kcal Electronic energy + Delta-G solvation = -15704.330567 eV Core-core repulsion = 13314.983717 eV Total energy + Delta-G solvation = -2389.346850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.49409 -37.40982 -34.28795 -33.47527 -32.80324 -29.46659 -28.06356 -27.02352 -24.51122 -22.52388 -22.13030 -20.70175 -17.93011 -16.98112 -16.84428 -16.68549 -15.79680 -15.49023 -15.19454 -14.85115 -14.32863 -13.95448 -13.65727 -13.28370 -13.02720 -12.97302 -12.66796 -12.52399 -12.47222 -12.27513 -12.12360 -11.86157 -11.74257 -11.42097 -10.91299 -10.82628 -10.39488 -10.15681 -8.85060 -7.98519 -6.22133 1.33906 1.39156 1.45068 2.38813 3.07134 3.13324 3.89870 4.20460 4.30137 4.46227 4.50704 4.58780 4.67131 4.70803 4.80212 4.84236 4.89958 4.92538 5.06293 5.10200 5.23949 5.29100 5.35767 5.38457 5.42649 5.52814 5.63580 5.72365 5.89902 6.27145 6.55411 6.75639 6.97390 7.19741 7.49679 8.90015 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.014843 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.079824 B = 1885.955543 C = 2416.173298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.066 3.934 3 N -0.687 5.687 4 C 0.223 3.777 5 C -0.534 4.534 6 H 0.041 0.959 7 C 0.037 3.963 8 N -0.903 5.903 9 Si 0.932 3.068 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.277 1.277 13 C -0.129 4.129 14 C 0.081 3.919 15 O -0.400 6.400 16 C 0.090 3.910 17 H 0.042 0.958 18 C -0.134 4.134 19 C -0.117 4.117 20 H 0.037 0.963 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.008 0.992 25 H 0.342 0.658 26 H 0.262 0.738 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -2.439 -5.068 5.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.064 4.064 3 N -0.319 5.319 4 C 0.133 3.867 5 C -0.573 4.573 6 H 0.059 0.941 7 C -0.164 4.164 8 N -0.543 5.543 9 Si 0.760 3.240 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.167 4.167 14 C 0.005 3.995 15 O -0.320 6.320 16 C 0.032 3.968 17 H 0.061 0.939 18 C -0.191 4.191 19 C -0.155 4.155 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.026 0.974 25 H 0.162 0.838 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.216 -2.178 -5.753 6.271 hybrid contribution 0.189 -0.823 2.384 2.529 sum 1.405 -3.001 -3.370 4.726 Atomic orbital electron populations 1.21691 0.95131 1.01406 1.01166 1.21613 0.94623 0.91608 0.98562 1.61113 1.09382 1.12229 1.49151 1.18544 0.85645 0.91705 0.90850 1.21814 1.26300 1.16669 0.92529 0.94078 1.25401 0.95250 0.95461 1.00241 1.69756 1.36442 1.25739 1.22368 0.85958 0.77878 0.79808 0.80393 1.20620 1.21182 1.20166 1.21987 0.95281 0.98726 1.00734 1.22364 0.94508 0.96706 0.85962 1.87705 1.78304 1.25232 1.40756 1.22095 0.94047 0.82351 0.98327 0.93949 1.21745 1.01495 1.00938 0.94956 1.22063 0.95436 0.99943 0.98069 0.94353 0.92230 0.91435 0.92848 0.97400 0.83779 0.92792 0.90831 0.95032 0.89133 0.94533 0.91912 0.91499 0.90071 0.92683 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 10.17 71.98 0.73 -4.00 16 2 C 0.07 2.79 5.76 86.30 0.50 3.28 16 3 N -0.69 -31.94 6.01 -473.31 -2.85 -34.79 16 4 C 0.22 10.47 0.42 2.90 0.00 10.47 16 5 C -0.53 -27.06 4.91 25.60 0.13 -26.93 16 6 H 0.04 2.14 6.77 -2.91 -0.02 2.13 16 7 C 0.04 1.88 5.01 84.66 0.42 2.30 16 8 N -0.90 -47.17 9.67 21.45 0.21 -46.96 16 9 Si 0.93 41.95 29.54 68.60 2.03 43.97 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C -0.13 -6.01 5.00 30.68 0.15 -5.85 16 14 C 0.08 3.48 6.62 72.01 0.48 3.95 16 15 O -0.40 -16.63 10.41 -148.98 -1.55 -18.18 16 16 C 0.09 3.50 3.03 30.63 0.09 3.59 16 17 H 0.04 1.79 6.79 -2.39 -0.02 1.77 16 18 C -0.13 -3.99 9.57 71.98 0.69 -3.30 16 19 C -0.12 -4.90 3.95 30.69 0.12 -4.78 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 22 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 2.16 6.48 -2.39 -0.02 2.14 16 24 H 0.01 0.37 6.81 -2.39 -0.02 0.35 16 25 H 0.34 17.25 6.68 -89.70 -0.60 16.65 16 26 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 27 H 0.07 3.76 6.20 -2.39 -0.01 3.75 16 28 H 0.03 1.44 8.14 -2.38 -0.02 1.43 16 29 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.04 1.67 7.38 -2.39 -0.02 1.66 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 2.26 6.67 -2.39 -0.02 2.24 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -53.53 266.75 1.61 -51.92 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.46 Total: 25.31 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 3.31 Total: -21.26 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.64 Total: -81.75 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.55 Total: -18.18 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -53.53 1.61 -51.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141442.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.537 kcal (2) G-P(sol) polarization free energy of solvation -53.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds