Wall clock time and date at job start Mon Mar 30 2020 20:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47220 * 2 1 4 4 C 1.46908 * 111.00204 * 174.99363 * 3 2 1 5 5 C 1.50696 * 109.54070 * 304.36342 * 4 3 2 6 6 H 1.08005 * 119.99984 * 125.41644 * 5 4 3 7 7 C 1.37870 * 120.00562 * 305.41784 * 5 4 3 8 8 N 1.31523 * 119.99804 * 355.19078 * 7 5 4 9 9 Si 1.86802 * 120.00504 * 175.19248 * 7 5 4 10 10 H 1.48500 * 109.47077 * 59.99835 * 9 7 5 11 11 H 1.48501 * 109.47374 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46903 * 300.00134 * 9 7 5 13 13 C 1.53181 * 109.53890 * 64.54041 * 4 3 2 14 14 C 1.53097 * 109.15797 * 176.84836 * 13 4 3 15 15 O 1.42905 * 109.41281 * 302.38990 * 14 13 4 16 16 C 1.42904 * 114.09766 * 61.16612 * 15 14 13 17 17 H 1.08992 * 109.48567 * 58.81720 * 16 15 14 18 18 C 1.53001 * 109.47809 * 178.85769 * 16 15 14 19 19 C 1.53095 * 109.41121 * 298.83406 * 16 15 14 20 20 H 1.09002 * 109.46922 * 299.99299 * 1 2 3 21 21 H 1.09008 * 109.46660 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47123 * 59.99816 * 1 2 3 23 23 H 1.09007 * 109.47432 * 120.00177 * 2 1 3 24 24 H 1.09002 * 109.47126 * 239.99943 * 2 1 3 25 25 H 1.00900 * 111.00284 * 298.94547 * 3 2 1 26 26 H 0.96994 * 119.99627 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.52294 * 296.75194 * 13 4 3 28 28 H 1.09000 * 109.51969 * 56.88542 * 13 4 3 29 29 H 1.08995 * 109.47904 * 62.37445 * 14 13 4 30 30 H 1.09002 * 109.47835 * 182.40906 * 14 13 4 31 31 H 1.08990 * 109.47446 * 59.99812 * 18 16 15 32 32 H 1.09009 * 109.46657 * 179.97438 * 18 16 15 33 33 H 1.08996 * 109.46937 * 299.99245 * 18 16 15 34 34 H 1.08997 * 109.52578 * 297.70663 * 19 16 15 35 35 H 1.09003 * 109.51918 * 177.51522 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4833 1.4259 0.1197 5 6 3.9094 0.6731 1.3537 6 1 4.6321 -0.1258 1.2762 7 6 3.3767 1.0040 2.5815 8 7 2.5695 2.0366 2.6914 9 14 3.8013 -0.0140 4.0890 10 1 5.2689 0.0219 4.3133 11 1 3.1049 0.5445 5.2758 12 1 3.3673 -1.4181 3.8764 13 6 4.1167 0.7822 -1.1176 14 6 5.6401 0.8999 -1.0210 15 8 6.0034 2.2767 -0.8999 16 6 5.4786 2.9184 0.2641 17 1 5.8285 2.3977 1.1554 18 6 5.9533 4.3724 0.3029 19 6 3.9487 2.8819 0.2191 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.7104 1.8779 -0.8243 26 1 2.1944 2.2692 3.5551 27 1 3.8349 -0.2696 -1.1656 28 1 3.7670 1.2944 -2.0140 29 1 5.9921 0.3527 -0.1465 30 1 6.0946 0.4816 -1.9191 31 1 5.6026 4.8930 -0.5881 32 1 5.5524 4.8618 1.1906 33 1 7.0425 4.3982 0.3339 34 1 3.5964 3.4371 -0.6502 35 1 3.5468 3.3316 1.1271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:32 Heat of formation + Delta-G solvation = -52.230918 kcal Electronic energy + Delta-G solvation = -15711.662437 eV Core-core repulsion = 13323.365946 eV Total energy + Delta-G solvation = -2388.296490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75773 -35.60545 -32.45510 -31.66694 -31.10071 -27.91160 -26.24827 -25.11225 -22.40979 -21.49171 -20.12312 -18.95571 -15.81332 -15.30586 -15.15857 -14.62077 -14.29328 -13.58150 -13.41831 -13.21129 -12.58110 -12.47333 -11.85738 -11.63997 -11.39628 -11.09710 -11.01696 -10.90167 -10.63587 -10.51408 -10.22828 -10.09238 -9.91391 -9.49631 -9.39465 -8.82911 -8.42714 -8.25166 -6.75253 -5.84872 -3.99294 3.31501 3.37317 3.40382 4.45408 4.69661 5.28882 5.55073 5.90225 5.93804 6.02727 6.06350 6.12957 6.20934 6.23625 6.29528 6.39429 6.52017 6.59201 6.62788 6.65752 6.79349 6.85920 6.92249 7.06337 7.19923 7.20951 7.48122 7.75716 7.92054 8.16993 8.35964 8.63524 8.88460 9.20636 9.66198 11.14711 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022423 B = 0.015673 C = 0.011704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.432395 B = 1786.113329 C = 2391.682404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 N -0.645 5.645 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.089 3.911 8 N -0.838 5.838 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.279 1.279 13 C -0.176 4.176 14 C 0.079 3.921 15 O -0.400 6.400 16 C 0.095 3.905 17 H 0.065 0.935 18 C -0.139 4.139 19 C -0.119 4.119 20 H 0.058 0.942 21 H 0.040 0.960 22 H 0.037 0.963 23 H 0.082 0.918 24 H -0.002 1.002 25 H 0.297 0.703 26 H 0.255 0.745 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.022 0.978 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -0.252 -4.158 4.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.058 4.058 3 N -0.273 5.273 4 C 0.156 3.844 5 C -0.566 4.566 6 H 0.069 0.931 7 C -0.118 4.118 8 N -0.472 5.472 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.216 4.216 14 C 0.002 3.998 15 O -0.320 6.320 16 C 0.038 3.962 17 H 0.083 0.917 18 C -0.197 4.197 19 C -0.158 4.158 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.100 0.900 24 H 0.016 0.984 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.249 0.064 -3.459 3.678 hybrid contribution 0.199 -1.135 0.113 1.158 sum 1.448 -1.071 -3.345 3.799 Atomic orbital electron populations 1.21759 0.97661 0.99498 1.01209 1.21617 0.92664 0.91842 0.99649 1.60643 1.12706 1.12465 1.41439 1.18506 0.83413 0.91881 0.90586 1.20743 1.26035 1.18760 0.91046 0.93068 1.24852 0.94550 0.94519 0.97869 1.70007 1.29351 1.24539 1.23317 0.87027 0.78489 0.81106 0.83470 1.20472 1.21373 1.20470 1.22944 0.97076 1.00996 1.00618 1.22281 0.94768 0.82929 0.99854 1.87692 1.74536 1.23925 1.45856 1.22056 0.94613 0.91793 0.87736 0.91673 1.21748 1.00380 0.95896 1.01634 1.22048 0.93275 0.98703 1.01773 0.92264 0.94117 0.94404 0.89976 0.98374 0.88793 0.93504 0.92572 0.94269 0.92881 0.91665 0.92994 0.91551 0.93269 0.95972 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.21 37.16 0.38 -2.24 16 2 C 0.07 1.53 5.71 -3.83 -0.02 1.51 16 3 N -0.65 -14.75 5.18 -100.95 -0.52 -15.27 16 4 C 0.25 5.72 0.32 -132.57 -0.04 5.67 16 5 C -0.53 -13.39 4.85 -34.44 -0.17 -13.56 16 6 H 0.05 1.33 6.74 -52.48 -0.35 0.97 16 7 C 0.09 2.31 4.95 -17.82 -0.09 2.22 16 8 N -0.84 -22.49 10.92 55.43 0.61 -21.89 16 9 Si 0.87 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.18 -3.71 4.64 -26.59 -0.12 -3.84 16 14 C 0.08 1.59 6.61 37.21 0.25 1.84 16 15 O -0.40 -8.54 10.41 -35.23 -0.37 -8.91 16 16 C 0.10 2.04 3.04 -26.68 -0.08 1.96 16 17 H 0.07 1.52 7.38 -51.93 -0.38 1.13 16 18 C -0.14 -2.49 9.56 37.16 0.36 -2.13 16 19 C -0.12 -2.75 4.37 -26.59 -0.12 -2.87 16 20 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 21 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.97 6.57 -51.92 -0.34 1.63 16 24 H 0.00 -0.04 6.76 -51.93 -0.35 -0.39 16 25 H 0.30 6.39 8.79 -39.29 -0.35 6.05 16 26 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.06 1.17 6.80 -51.93 -0.35 0.82 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.11 6.77 -51.93 -0.35 0.76 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 2.61 6.31 -51.93 -0.33 2.28 16 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -26.60 269.32 -6.65 -33.25 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.75 Total: 4.78 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 0.34 Total: -11.44 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.08 Total: -37.15 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.37 Total: -8.91 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.60 -6.65 -33.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.982 kcal (2) G-P(sol) polarization free energy of solvation -26.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds