Wall clock time and date at job start Mon Mar 30 2020 20:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47220 * 2 1 4 4 C 1.46908 * 111.00204 * 174.99363 * 3 2 1 5 5 C 1.50696 * 109.54070 * 304.36342 * 4 3 2 6 6 H 1.08005 * 119.99984 * 125.41644 * 5 4 3 7 7 C 1.37870 * 120.00562 * 305.41784 * 5 4 3 8 8 N 1.31523 * 119.99804 * 355.19078 * 7 5 4 9 9 Si 1.86802 * 120.00504 * 175.19248 * 7 5 4 10 10 H 1.48500 * 109.47077 * 59.99835 * 9 7 5 11 11 H 1.48501 * 109.47374 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46903 * 300.00134 * 9 7 5 13 13 C 1.53181 * 109.53890 * 64.54041 * 4 3 2 14 14 C 1.53097 * 109.15797 * 176.84836 * 13 4 3 15 15 O 1.42905 * 109.41281 * 302.38990 * 14 13 4 16 16 C 1.42904 * 114.09766 * 61.16612 * 15 14 13 17 17 H 1.08992 * 109.48567 * 58.81720 * 16 15 14 18 18 C 1.53001 * 109.47809 * 178.85769 * 16 15 14 19 19 C 1.53095 * 109.41121 * 298.83406 * 16 15 14 20 20 H 1.09002 * 109.46922 * 299.99299 * 1 2 3 21 21 H 1.09008 * 109.46660 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47123 * 59.99816 * 1 2 3 23 23 H 1.09007 * 109.47432 * 120.00177 * 2 1 3 24 24 H 1.09002 * 109.47126 * 239.99943 * 2 1 3 25 25 H 1.00900 * 111.00284 * 298.94547 * 3 2 1 26 26 H 0.96994 * 119.99627 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.52294 * 296.75194 * 13 4 3 28 28 H 1.09000 * 109.51969 * 56.88542 * 13 4 3 29 29 H 1.08995 * 109.47904 * 62.37445 * 14 13 4 30 30 H 1.09002 * 109.47835 * 182.40906 * 14 13 4 31 31 H 1.08990 * 109.47446 * 59.99812 * 18 16 15 32 32 H 1.09009 * 109.46657 * 179.97438 * 18 16 15 33 33 H 1.08996 * 109.46937 * 299.99245 * 18 16 15 34 34 H 1.08997 * 109.52578 * 297.70663 * 19 16 15 35 35 H 1.09003 * 109.51918 * 177.51522 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4833 1.4259 0.1197 5 6 3.9094 0.6731 1.3537 6 1 4.6321 -0.1258 1.2762 7 6 3.3767 1.0040 2.5815 8 7 2.5695 2.0366 2.6914 9 14 3.8013 -0.0140 4.0890 10 1 5.2689 0.0219 4.3133 11 1 3.1049 0.5445 5.2758 12 1 3.3673 -1.4181 3.8764 13 6 4.1167 0.7822 -1.1176 14 6 5.6401 0.8999 -1.0210 15 8 6.0034 2.2767 -0.8999 16 6 5.4786 2.9184 0.2641 17 1 5.8285 2.3977 1.1554 18 6 5.9533 4.3724 0.3029 19 6 3.9487 2.8819 0.2191 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.7104 1.8779 -0.8243 26 1 2.1944 2.2692 3.5551 27 1 3.8349 -0.2696 -1.1656 28 1 3.7670 1.2944 -2.0140 29 1 5.9921 0.3527 -0.1465 30 1 6.0946 0.4816 -1.9191 31 1 5.6026 4.8930 -0.5881 32 1 5.5524 4.8618 1.1906 33 1 7.0425 4.3982 0.3339 34 1 3.5964 3.4371 -0.6502 35 1 3.5468 3.3316 1.1271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:31 Heat of formation + Delta-G solvation = -69.110923 kcal Electronic energy + Delta-G solvation = -15712.394409 eV Core-core repulsion = 13323.365946 eV Total energy + Delta-G solvation = -2389.028462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48666 -37.34342 -34.29876 -33.30700 -32.88725 -29.55366 -27.91737 -27.05200 -24.10137 -23.12525 -21.83080 -20.81084 -17.74131 -16.99466 -16.90503 -16.40621 -16.09094 -15.27700 -15.10468 -14.93723 -14.29787 -14.11213 -13.51079 -13.23755 -12.99120 -12.82036 -12.71623 -12.57806 -12.46885 -12.18571 -12.02616 -11.76641 -11.73569 -11.26294 -11.18003 -10.68662 -10.29089 -10.09650 -8.51398 -7.83562 -6.01613 1.41901 1.45715 1.49134 2.50021 3.08066 3.33775 3.83469 4.28590 4.32950 4.42772 4.47155 4.52769 4.59984 4.67656 4.73735 4.79566 4.91760 4.96662 5.07381 5.11222 5.13257 5.19713 5.29301 5.43235 5.46341 5.51540 5.68819 5.78350 6.01526 6.32761 6.59715 6.74993 7.03662 7.39802 7.65332 9.13380 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022423 B = 0.015673 C = 0.011704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.432395 B = 1786.113329 C = 2391.682404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.075 3.925 3 N -0.660 5.660 4 C 0.237 3.763 5 C -0.527 4.527 6 H 0.040 0.960 7 C 0.054 3.946 8 N -0.858 5.858 9 Si 0.917 3.083 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.280 1.280 13 C -0.169 4.169 14 C 0.077 3.923 15 O -0.401 6.401 16 C 0.096 3.904 17 H 0.040 0.960 18 C -0.133 4.133 19 C -0.113 4.113 20 H 0.039 0.961 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.009 0.991 25 H 0.305 0.695 26 H 0.250 0.750 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.025 0.975 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -0.439 -5.155 5.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.054 4.054 3 N -0.288 5.288 4 C 0.147 3.853 5 C -0.566 4.566 6 H 0.058 0.942 7 C -0.151 4.151 8 N -0.493 5.493 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.206 1.206 13 C -0.209 4.209 14 C 0.000 4.000 15 O -0.321 6.321 16 C 0.039 3.961 17 H 0.058 0.942 18 C -0.190 4.190 19 C -0.151 4.151 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.512 -0.132 -4.460 4.711 hybrid contribution 0.126 -1.110 0.391 1.183 sum 1.638 -1.242 -4.069 4.559 Atomic orbital electron populations 1.21658 0.95327 1.01023 1.01104 1.21551 0.94582 0.90832 0.98472 1.60566 1.12605 1.13553 1.42100 1.18547 0.84002 0.91939 0.90813 1.20885 1.25346 1.18229 0.92110 0.94157 1.25310 0.94794 0.95261 0.99736 1.70123 1.30379 1.25533 1.23313 0.86293 0.78091 0.79894 0.81221 1.20397 1.21509 1.20551 1.22828 0.97596 1.00792 0.99705 1.22396 0.94337 0.82461 1.00853 1.87701 1.74446 1.24438 1.45520 1.22010 0.93535 0.93648 0.86934 0.94176 1.21704 1.01519 0.93432 1.02353 1.21931 0.94431 0.98405 1.00377 0.94136 0.91810 0.92641 0.93183 0.97341 0.87932 0.94016 0.92536 0.93454 0.94182 0.88390 0.92002 0.91115 0.91533 0.95644 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 10.21 71.98 0.74 -3.92 16 2 C 0.08 3.13 5.71 86.30 0.49 3.62 16 3 N -0.66 -29.80 5.18 -473.29 -2.45 -32.25 16 4 C 0.24 10.91 0.32 2.90 0.00 10.91 16 5 C -0.53 -26.88 4.85 25.60 0.12 -26.76 16 6 H 0.04 2.10 6.74 -2.91 -0.02 2.08 16 7 C 0.05 2.80 4.95 84.65 0.42 3.22 16 8 N -0.86 -46.61 10.92 21.45 0.23 -46.38 16 9 Si 0.92 42.30 29.54 68.60 2.03 44.32 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C -0.17 -6.87 4.64 30.69 0.14 -6.72 16 14 C 0.08 2.95 6.61 72.01 0.48 3.42 16 15 O -0.40 -16.39 10.41 -148.98 -1.55 -17.94 16 16 C 0.10 4.04 3.04 30.63 0.09 4.14 16 17 H 0.04 1.87 7.38 -2.39 -0.02 1.86 16 18 C -0.13 -4.52 9.56 71.98 0.69 -3.83 16 19 C -0.11 -5.15 4.37 30.69 0.13 -5.02 16 20 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 23 H 0.05 2.40 6.57 -2.38 -0.02 2.38 16 24 H 0.01 0.34 6.76 -2.39 -0.02 0.32 16 25 H 0.30 12.79 8.79 -89.69 -0.79 12.00 16 26 H 0.25 13.36 8.31 -92.71 -0.77 12.59 16 27 H 0.06 2.26 6.80 -2.39 -0.02 2.25 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.04 1.64 6.77 -2.39 -0.02 1.62 16 30 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 3.84 6.31 -2.39 -0.02 3.82 16 Total: -1.00 -55.45 269.32 1.84 -53.62 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.27 Total: 19.57 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 3.31 Total: -20.94 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.22 Total: -78.63 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.55 Total: -17.94 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -55.45 1.84 -53.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.495 kcal (2) G-P(sol) polarization free energy of solvation -55.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds