Wall clock time and date at job start Mon Mar 30 2020 20:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47186 * 2 1 4 4 C 1.46897 * 110.99718 * 184.81995 * 3 2 1 5 5 C 1.50693 * 109.54599 * 54.35875 * 4 3 2 6 6 H 1.07997 * 120.00308 * 243.83409 * 5 4 3 7 7 C 1.37879 * 120.00300 * 63.83393 * 5 4 3 8 8 N 1.31520 * 119.99489 * 352.27452 * 7 5 4 9 9 Si 1.86796 * 120.00567 * 172.27746 * 7 5 4 10 10 H 1.48501 * 109.47169 * 59.99837 * 9 7 5 11 11 H 1.48506 * 109.46879 * 300.00065 * 9 7 5 12 12 H 1.48494 * 109.47302 * 180.02562 * 9 7 5 13 13 C 1.53178 * 109.61451 * 294.13489 * 4 3 2 14 14 C 1.53087 * 109.16440 * 297.06908 * 13 4 3 15 15 O 1.42904 * 109.41986 * 302.39215 * 14 13 4 16 16 C 1.42907 * 114.09277 * 61.15577 * 15 14 13 17 17 H 1.08999 * 109.48859 * 58.83396 * 16 15 14 18 18 C 1.52997 * 109.47945 * 178.85965 * 16 15 14 19 19 C 1.53087 * 109.41805 * 298.84170 * 16 15 14 20 20 H 1.09008 * 109.47073 * 59.99900 * 1 2 3 21 21 H 1.09001 * 109.47390 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47098 * 300.00395 * 1 2 3 23 23 H 1.08996 * 109.47164 * 239.99938 * 2 1 3 24 24 H 1.09004 * 109.46584 * 120.00182 * 2 1 3 25 25 H 1.00904 * 110.99827 * 308.77490 * 3 2 1 26 26 H 0.97000 * 119.99853 * 4.97120 * 8 7 5 27 27 H 1.08998 * 109.52455 * 56.97879 * 13 4 3 28 28 H 1.09007 * 109.52131 * 177.16510 * 13 4 3 29 29 H 1.08999 * 109.48383 * 182.41069 * 14 13 4 30 30 H 1.09000 * 109.49089 * 62.38698 * 14 13 4 31 31 H 1.08996 * 109.47392 * 179.97438 * 18 16 15 32 32 H 1.09006 * 109.47333 * 299.94356 * 18 16 15 33 33 H 1.09001 * 109.47366 * 59.94036 * 18 16 15 34 34 H 1.08998 * 109.52505 * 297.71150 * 19 16 15 35 35 H 1.08996 * 109.57558 * 177.54621 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4836 1.4257 -0.1152 5 6 3.9156 0.6452 -1.3297 6 1 4.5207 -0.2419 -1.2144 7 6 3.5384 1.0635 -2.5882 8 7 2.6798 2.0506 -2.7231 9 14 4.2468 0.2283 -4.1015 10 1 3.8935 -1.2139 -4.0820 11 1 5.7245 0.3760 -4.1022 12 1 3.6862 0.8594 -5.3232 13 6 4.1153 0.8136 1.1388 14 6 3.7350 1.6591 2.3570 15 8 4.1672 3.0060 2.1542 16 6 3.5729 3.6453 1.0227 17 1 2.4889 3.6529 1.1371 18 6 4.0852 5.0834 0.9218 19 6 3.9468 2.8797 -0.2491 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8932 -0.5139 0.8900 25 1 1.5840 1.9226 -0.7344 26 1 2.3671 2.5317 -1.9411 27 1 3.7477 -0.2038 1.2723 28 1 5.1998 0.7986 1.0300 29 1 4.2168 1.2528 3.2463 30 1 2.6532 1.6405 2.4892 31 1 3.6322 5.5708 0.0585 32 1 3.8189 5.6285 1.8274 33 1 5.1693 5.0758 0.8079 34 1 5.0278 2.9064 -0.3858 35 1 3.4594 3.3396 -1.1088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:35 Heat of formation + Delta-G solvation = -51.955683 kcal Electronic energy + Delta-G solvation = -15768.631773 eV Core-core repulsion = 13380.347218 eV Total energy + Delta-G solvation = -2388.284555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.05092 -35.94674 -32.74325 -31.79808 -31.07394 -27.89310 -26.38557 -25.37390 -22.39107 -21.53601 -20.63564 -18.44728 -17.36363 -15.47551 -14.86269 -14.46681 -14.25474 -14.09344 -13.78187 -13.27399 -12.59618 -12.19518 -12.04369 -11.79256 -11.62183 -11.37218 -11.04296 -10.81959 -10.77441 -10.45686 -10.31477 -10.19570 -10.11491 -9.87111 -9.30610 -9.07047 -8.66139 -8.35359 -7.04481 -6.27933 -4.20484 3.36025 3.38546 3.56497 4.42798 4.53511 5.14493 5.51928 5.66299 5.75865 5.91824 5.93789 6.02957 6.06915 6.11569 6.16719 6.27039 6.28901 6.42039 6.51642 6.54199 6.62631 6.70841 6.78778 6.91713 7.06556 7.15376 7.24850 7.43413 7.97420 8.04895 8.19432 8.51651 8.63906 8.82563 9.49054 10.88042 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.013664 C = 0.011073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.595629 B = 2048.730314 C = 2528.123635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 N -0.692 5.692 4 C 0.216 3.784 5 C -0.611 4.611 6 H 0.047 0.953 7 C 0.030 3.970 8 N -0.912 5.912 9 Si 1.062 2.938 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.283 1.283 13 C -0.126 4.126 14 C 0.071 3.929 15 O -0.394 6.394 16 C 0.089 3.911 17 H 0.058 0.942 18 C -0.142 4.142 19 C -0.136 4.136 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.335 0.665 26 H 0.274 0.726 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 0.284 5.286 5.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.650 4.650 6 H 0.065 0.935 7 C -0.175 4.175 8 N -0.554 5.554 9 Si 0.891 3.109 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.208 1.208 13 C -0.164 4.164 14 C -0.006 4.006 15 O -0.314 6.314 16 C 0.032 3.968 17 H 0.076 0.924 18 C -0.200 4.200 19 C -0.175 4.175 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.156 0.844 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.619 0.416 4.447 4.510 hybrid contribution 0.136 -0.516 0.462 0.706 sum -0.484 -0.100 4.909 4.934 Atomic orbital electron populations 1.21798 0.97457 1.00125 1.01134 1.21604 0.92457 0.92149 1.00314 1.61206 1.08060 1.11333 1.52123 1.18628 0.84832 0.91707 0.92089 1.22409 1.37035 1.12804 0.92795 0.93463 1.25709 0.94077 0.96761 1.00924 1.70977 1.27858 1.21945 1.34629 0.83634 0.75996 0.75449 0.75851 1.21603 1.21435 1.20786 1.22064 0.99997 0.98597 0.95760 1.22412 0.98940 0.82272 0.96937 1.87731 1.69244 1.26487 1.47960 1.22082 0.96566 0.91475 0.86676 0.92383 1.21772 1.01647 0.95350 1.01186 1.22356 1.00951 0.97429 0.96729 0.93359 0.93581 0.93258 0.93614 0.93310 0.84390 0.90940 0.92517 0.92605 0.91297 0.92900 0.91615 0.92979 0.92544 0.92599 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.12 37.16 0.38 -2.25 16 2 C 0.06 1.36 5.77 -3.82 -0.02 1.34 16 3 N -0.69 -15.48 4.90 -100.95 -0.49 -15.97 16 4 C 0.22 5.09 0.26 -132.57 -0.03 5.06 16 5 C -0.61 -16.12 6.34 -34.44 -0.22 -16.34 16 6 H 0.05 1.29 7.76 -52.49 -0.41 0.88 16 7 C 0.03 0.80 5.18 -17.82 -0.09 0.71 16 8 N -0.91 -25.20 12.70 55.43 0.70 -24.49 16 9 Si 1.06 24.40 29.91 -169.99 -5.08 19.31 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C -0.13 -2.70 4.72 -26.59 -0.13 -2.83 16 14 C 0.07 1.38 6.68 37.20 0.25 1.62 16 15 O -0.39 -8.14 10.41 -35.23 -0.37 -8.51 16 16 C 0.09 1.80 3.10 -26.69 -0.08 1.72 16 17 H 0.06 1.20 7.75 -51.93 -0.40 0.79 16 18 C -0.14 -2.42 9.56 37.16 0.36 -2.06 16 19 C -0.14 -3.12 3.94 -26.59 -0.10 -3.22 16 20 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 1.10 6.75 -51.93 -0.35 0.75 16 24 H 0.05 0.99 6.65 -51.93 -0.35 0.64 16 25 H 0.34 8.04 5.83 -39.29 -0.23 7.82 16 26 H 0.27 7.34 3.28 -40.82 -0.13 7.21 16 27 H 0.06 1.19 6.54 -51.93 -0.34 0.85 16 28 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 1.03 7.75 -51.93 -0.40 0.63 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.93 5.38 -51.93 -0.28 1.65 16 LS Contribution 265.88 15.07 4.01 4.01 Total: -1.00 -27.36 265.88 -6.43 -33.79 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.49 Total: 8.13 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 0.30 Total: -16.26 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.21 Total: -40.47 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.37 Total: -8.51 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.36 -6.43 -33.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.167 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds