Wall clock time and date at job start Mon Mar 30 2020 20:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47104 * 2 1 4 4 C 1.46903 * 110.99544 * 181.17517 * 3 2 1 5 5 C 1.50692 * 109.54756 * 54.93006 * 4 3 2 6 6 H 1.07996 * 120.00515 * 235.59935 * 5 4 3 7 7 C 1.37881 * 119.99627 * 55.87573 * 5 4 3 8 8 N 1.31512 * 120.00363 * 5.61725 * 7 5 4 9 9 Si 1.86800 * 119.99634 * 185.62162 * 7 5 4 10 10 H 1.48501 * 109.47680 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47068 * 120.00046 * 9 7 5 12 12 H 1.48500 * 109.47130 * 239.99439 * 9 7 5 13 13 C 1.53185 * 109.54052 * 175.11043 * 4 3 2 14 14 C 1.53104 * 109.15658 * 63.05964 * 13 4 3 15 15 O 1.42909 * 109.48331 * 57.47956 * 14 13 4 16 16 C 1.42908 * 114.09475 * 298.88090 * 15 14 13 17 17 H 1.09001 * 109.48410 * 301.17736 * 16 15 14 18 18 C 1.53001 * 109.48596 * 181.15036 * 16 15 14 19 19 C 1.53087 * 109.41281 * 61.16539 * 16 15 14 20 20 H 1.08990 * 109.47335 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46955 * 300.00513 * 1 2 3 22 22 H 1.09001 * 109.46985 * 59.99996 * 1 2 3 23 23 H 1.08999 * 109.47404 * 239.99771 * 2 1 3 24 24 H 1.09001 * 109.46985 * 120.00004 * 2 1 3 25 25 H 1.00895 * 110.99905 * 305.12158 * 3 2 1 26 26 H 0.97000 * 120.00560 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.51853 * 182.87607 * 13 4 3 28 28 H 1.08998 * 109.51980 * 303.07018 * 13 4 3 29 29 H 1.08995 * 109.40987 * 297.49559 * 14 13 4 30 30 H 1.09000 * 109.49066 * 177.50657 * 14 13 4 31 31 H 1.08994 * 109.47208 * 300.05109 * 18 16 15 32 32 H 1.09003 * 109.47140 * 60.05503 * 18 16 15 33 33 H 1.09001 * 109.47100 * 180.02562 * 18 16 15 34 34 H 1.09002 * 109.52293 * 182.48460 * 19 16 15 35 35 H 1.08995 * 109.52418 * 62.29308 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4879 1.4242 -0.0281 5 6 3.9910 0.6299 -1.2058 6 1 4.6944 -0.1752 -1.0533 7 6 3.5576 0.9350 -2.4787 8 7 2.7932 1.9862 -2.6789 9 14 4.0562 -0.1452 -3.9189 10 1 4.9127 -1.2561 -3.4314 11 1 2.8402 -0.7032 -4.5634 12 1 4.8124 0.6653 -4.9070 13 6 3.9595 2.8765 -0.1504 14 6 3.5127 3.6559 1.0894 15 8 4.0363 3.0279 2.2615 16 6 3.5898 1.6838 2.4522 17 1 2.5019 1.6681 2.5186 18 6 4.1880 1.1258 3.7451 19 6 4.0414 0.8247 1.2683 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6293 1.9065 -0.7704 26 1 2.4886 2.2010 -3.5744 27 1 5.0467 2.9015 -0.2226 28 1 3.5237 3.3271 -1.0421 29 1 2.4239 3.6660 1.1380 30 1 3.8834 4.6791 1.0289 31 1 5.2758 1.1419 3.6787 32 1 3.8663 1.7376 4.5880 33 1 3.8476 0.1005 3.8901 34 1 3.6643 -0.1907 1.3902 35 1 5.1304 0.8071 1.2255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:40 Heat of formation + Delta-G solvation = -60.752782 kcal Electronic energy + Delta-G solvation = -15709.194150 eV Core-core repulsion = 13320.528124 eV Total energy + Delta-G solvation = -2388.666026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.75919 -35.59020 -32.45661 -31.85914 -31.04281 -27.66536 -26.59170 -25.22895 -22.60017 -20.96028 -20.69914 -18.29285 -16.46897 -15.30606 -14.91519 -14.69905 -14.05620 -14.04608 -13.58428 -13.05630 -12.55168 -12.31915 -11.93450 -11.68414 -11.45550 -11.20368 -11.08323 -10.89274 -10.64097 -10.40293 -10.30426 -10.17840 -10.04934 -9.77223 -9.15957 -9.02033 -8.67164 -8.25962 -6.94237 -6.02810 -4.20387 3.19972 3.29640 3.33595 4.32430 4.67229 5.11755 5.63746 5.75845 5.81159 6.02326 6.04900 6.18787 6.23580 6.34544 6.35715 6.38832 6.46519 6.54093 6.57349 6.63830 6.75919 6.91447 6.95403 7.10263 7.24985 7.29998 7.55551 7.72947 7.82318 8.18985 8.25550 8.65550 8.87637 9.11610 9.49190 10.89185 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.012281 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.016007 B = 2279.454221 C = 2561.224504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 N -0.683 5.683 4 C 0.233 3.767 5 C -0.531 4.531 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.132 4.132 14 C 0.067 3.933 15 O -0.398 6.398 16 C 0.094 3.906 17 H 0.061 0.939 18 C -0.143 4.143 19 C -0.125 4.125 20 H 0.041 0.959 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.047 0.953 25 H 0.353 0.647 26 H 0.262 0.738 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -0.842 5.744 5.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 N -0.317 5.317 4 C 0.143 3.857 5 C -0.570 4.570 6 H 0.071 0.929 7 C -0.131 4.131 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.171 4.171 14 C -0.010 4.010 15 O -0.318 6.318 16 C 0.036 3.964 17 H 0.079 0.921 18 C -0.200 4.200 19 C -0.163 4.163 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.174 0.826 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.471 -0.587 6.410 6.602 hybrid contribution 0.315 -1.024 -2.158 2.410 sum -1.156 -1.611 4.251 4.691 Atomic orbital electron populations 1.21775 0.97780 0.99714 1.01065 1.21594 0.92277 0.92958 0.99777 1.61085 1.09032 1.11127 1.50503 1.18411 0.85310 0.91728 0.90271 1.21771 1.26656 1.16649 0.91942 0.92871 1.24932 0.94941 0.94727 0.98541 1.69688 1.36055 1.25283 1.22056 0.86598 0.78358 0.80831 0.82617 1.19875 1.21022 1.21023 1.22157 0.99611 0.97674 0.97650 1.22569 0.97815 0.94867 0.85705 1.87711 1.72445 1.26926 1.44725 1.21946 0.97925 0.82554 0.93973 0.92110 1.21790 1.01304 0.99971 0.96976 1.22185 0.99739 0.98416 0.95959 0.93965 0.93286 0.93522 0.94458 0.93497 0.82614 0.92730 0.93657 0.88711 0.93254 0.91552 0.92632 0.92972 0.91975 0.92712 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.16 37.16 0.38 -2.22 16 2 C 0.06 1.35 5.76 -3.82 -0.02 1.33 16 3 N -0.68 -15.41 4.81 -100.94 -0.49 -15.90 16 4 C 0.23 5.48 0.27 -132.57 -0.04 5.44 16 5 C -0.53 -13.82 6.52 -34.44 -0.22 -14.04 16 6 H 0.05 1.43 7.75 -52.49 -0.41 1.02 16 7 C 0.07 1.82 4.94 -17.82 -0.09 1.74 16 8 N -0.89 -23.28 9.74 55.43 0.54 -22.74 16 9 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C -0.13 -3.08 4.78 -26.58 -0.13 -3.21 16 14 C 0.07 1.38 6.68 37.21 0.25 1.63 16 15 O -0.40 -8.34 10.41 -35.23 -0.37 -8.71 16 16 C 0.09 1.82 3.10 -26.69 -0.08 1.74 16 17 H 0.06 1.23 7.75 -51.93 -0.40 0.82 16 18 C -0.14 -2.28 9.56 37.16 0.36 -1.93 16 19 C -0.12 -2.67 3.99 -26.59 -0.11 -2.78 16 20 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.04 0.88 6.68 -51.93 -0.35 0.54 16 24 H 0.05 0.96 6.44 -51.93 -0.33 0.62 16 25 H 0.35 8.61 6.73 -39.29 -0.26 8.35 16 26 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 27 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 2.38 6.31 -51.93 -0.33 2.06 16 29 H 0.05 1.02 7.75 -51.93 -0.40 0.62 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 1.15 6.43 -51.93 -0.33 0.81 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 269.04 15.07 4.05 4.05 Total: -1.00 -25.98 269.04 -6.74 -32.72 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.76 Total: 7.20 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 0.30 Total: -12.30 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.05 Total: -38.63 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.37 Total: -8.71 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.98 -6.74 -32.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.034 kcal (2) G-P(sol) polarization free energy of solvation -25.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds