Wall clock time and date at job start Mon Mar 30 2020 20:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.47104 * 2 1 4 4 C 1.46903 * 110.99544 * 181.17517 * 3 2 1 5 5 C 1.50692 * 109.54756 * 54.93006 * 4 3 2 6 6 H 1.07996 * 120.00515 * 235.59935 * 5 4 3 7 7 C 1.37881 * 119.99627 * 55.87573 * 5 4 3 8 8 N 1.31512 * 120.00363 * 5.61725 * 7 5 4 9 9 Si 1.86800 * 119.99634 * 185.62162 * 7 5 4 10 10 H 1.48501 * 109.47680 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47068 * 120.00046 * 9 7 5 12 12 H 1.48500 * 109.47130 * 239.99439 * 9 7 5 13 13 C 1.53185 * 109.54052 * 175.11043 * 4 3 2 14 14 C 1.53104 * 109.15658 * 63.05964 * 13 4 3 15 15 O 1.42909 * 109.48331 * 57.47956 * 14 13 4 16 16 C 1.42908 * 114.09475 * 298.88090 * 15 14 13 17 17 H 1.09001 * 109.48410 * 301.17736 * 16 15 14 18 18 C 1.53001 * 109.48596 * 181.15036 * 16 15 14 19 19 C 1.53087 * 109.41281 * 61.16539 * 16 15 14 20 20 H 1.08990 * 109.47335 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46955 * 300.00513 * 1 2 3 22 22 H 1.09001 * 109.46985 * 59.99996 * 1 2 3 23 23 H 1.08999 * 109.47404 * 239.99771 * 2 1 3 24 24 H 1.09001 * 109.46985 * 120.00004 * 2 1 3 25 25 H 1.00895 * 110.99905 * 305.12158 * 3 2 1 26 26 H 0.97000 * 120.00560 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.51853 * 182.87607 * 13 4 3 28 28 H 1.08998 * 109.51980 * 303.07018 * 13 4 3 29 29 H 1.08995 * 109.40987 * 297.49559 * 14 13 4 30 30 H 1.09000 * 109.49066 * 177.50657 * 14 13 4 31 31 H 1.08994 * 109.47208 * 300.05109 * 18 16 15 32 32 H 1.09003 * 109.47140 * 60.05503 * 18 16 15 33 33 H 1.09001 * 109.47100 * 180.02562 * 18 16 15 34 34 H 1.09002 * 109.52293 * 182.48460 * 19 16 15 35 35 H 1.08995 * 109.52418 * 62.29308 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4879 1.4242 -0.0281 5 6 3.9910 0.6299 -1.2058 6 1 4.6944 -0.1752 -1.0533 7 6 3.5576 0.9350 -2.4787 8 7 2.7932 1.9862 -2.6789 9 14 4.0562 -0.1452 -3.9189 10 1 4.9127 -1.2561 -3.4314 11 1 2.8402 -0.7032 -4.5634 12 1 4.8124 0.6653 -4.9070 13 6 3.9595 2.8765 -0.1504 14 6 3.5127 3.6559 1.0894 15 8 4.0363 3.0279 2.2615 16 6 3.5898 1.6838 2.4522 17 1 2.5019 1.6681 2.5186 18 6 4.1880 1.1258 3.7451 19 6 4.0414 0.8247 1.2683 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6293 1.9065 -0.7704 26 1 2.4886 2.2010 -3.5744 27 1 5.0467 2.9015 -0.2226 28 1 3.5237 3.3271 -1.0421 29 1 2.4239 3.6660 1.1380 30 1 3.8834 4.6791 1.0289 31 1 5.2758 1.1419 3.6787 32 1 3.8663 1.7376 4.5880 33 1 3.8476 0.1005 3.8901 34 1 3.6643 -0.1907 1.3902 35 1 5.1304 0.8071 1.2255 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:39 Heat of formation + Delta-G solvation = -76.639134 kcal Electronic energy + Delta-G solvation = -15709.883034 eV Core-core repulsion = 13320.528124 eV Total energy + Delta-G solvation = -2389.354910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47297 -37.33572 -34.28712 -33.41715 -32.85786 -29.32651 -28.25247 -27.07042 -24.32460 -22.58184 -22.38209 -20.08013 -18.40186 -16.95219 -16.80519 -16.40280 -15.82583 -15.71185 -15.32131 -14.69987 -14.28484 -13.92907 -13.48678 -13.09878 -13.07636 -12.93962 -12.80476 -12.66264 -12.37896 -12.19642 -11.99815 -11.90492 -11.79539 -11.53483 -10.90014 -10.85492 -10.52427 -10.05424 -8.82883 -7.98831 -6.24770 1.31894 1.37571 1.45369 2.37753 3.09954 3.11889 3.99073 4.21958 4.31435 4.48179 4.51488 4.58684 4.66433 4.71923 4.76470 4.83950 4.91529 4.98913 5.04303 5.08312 5.22333 5.29467 5.34057 5.38261 5.53980 5.55492 5.63686 5.80831 5.92169 6.25085 6.58736 6.72197 6.95493 7.19006 7.47468 8.87578 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.012281 C = 0.010930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.016007 B = 2279.454221 C = 2561.224504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 N -0.674 5.674 4 C 0.224 3.776 5 C -0.547 4.547 6 H 0.036 0.964 7 C 0.037 3.963 8 N -0.902 5.902 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.283 1.283 13 C -0.127 4.127 14 C 0.075 3.925 15 O -0.403 6.403 16 C 0.094 3.906 17 H 0.057 0.943 18 C -0.137 4.137 19 C -0.119 4.119 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.037 0.963 23 H 0.007 0.993 24 H 0.054 0.946 25 H 0.341 0.659 26 H 0.263 0.737 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -1.139 6.782 7.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 N -0.307 5.307 4 C 0.134 3.866 5 C -0.587 4.587 6 H 0.054 0.946 7 C -0.164 4.164 8 N -0.541 5.541 9 Si 0.764 3.236 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.209 1.209 13 C -0.166 4.166 14 C -0.002 4.002 15 O -0.323 6.323 16 C 0.036 3.964 17 H 0.075 0.925 18 C -0.194 4.194 19 C -0.158 4.158 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.056 0.944 23 H 0.025 0.975 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.014 -0.889 7.460 7.777 hybrid contribution 0.499 -0.952 -2.496 2.717 sum -1.514 -1.841 4.964 5.506 Atomic orbital electron populations 1.21681 0.95065 1.01356 1.01204 1.21635 0.94568 0.91763 0.98607 1.61122 1.08252 1.11822 1.49455 1.18487 0.85964 0.91611 0.90547 1.21956 1.26651 1.16662 0.93386 0.94593 1.25423 0.95139 0.95612 1.00186 1.69770 1.36282 1.25749 1.22323 0.85838 0.77947 0.79439 0.80358 1.20252 1.20710 1.20920 1.22035 0.98227 0.98091 0.98270 1.22491 0.97793 0.95468 0.84429 1.87722 1.72620 1.27622 1.44367 1.22049 0.97950 0.81627 0.94755 0.92466 1.21767 1.01150 1.01155 0.95328 1.22104 0.98794 0.98883 0.95973 0.91615 0.92025 0.94419 0.97521 0.92761 0.83954 0.92732 0.95403 0.90807 0.93246 0.89412 0.92614 0.91335 0.90058 0.92488 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 10.16 71.98 0.73 -3.85 16 2 C 0.06 2.66 5.76 86.30 0.50 3.16 16 3 N -0.67 -30.14 4.81 -473.28 -2.28 -32.42 16 4 C 0.22 10.58 0.27 2.90 0.00 10.58 16 5 C -0.55 -28.88 6.52 25.60 0.17 -28.71 16 6 H 0.04 1.97 7.75 -2.91 -0.02 1.95 16 7 C 0.04 1.93 4.94 84.66 0.42 2.35 16 8 N -0.90 -47.42 9.74 21.45 0.21 -47.21 16 9 Si 0.94 42.73 29.54 68.60 2.03 44.75 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C -0.13 -5.97 4.78 30.69 0.15 -5.83 16 14 C 0.07 3.00 6.68 72.02 0.48 3.48 16 15 O -0.40 -16.20 10.41 -148.98 -1.55 -17.75 16 16 C 0.09 3.48 3.10 30.62 0.10 3.57 16 17 H 0.06 2.18 7.75 -2.39 -0.02 2.17 16 18 C -0.14 -3.97 9.56 71.98 0.69 -3.28 16 19 C -0.12 -5.03 3.99 30.68 0.12 -4.91 16 20 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.01 0.31 6.68 -2.39 -0.02 0.29 16 24 H 0.05 2.14 6.44 -2.39 -0.02 2.13 16 25 H 0.34 16.67 6.73 -89.70 -0.60 16.06 16 26 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 3.76 6.31 -2.39 -0.02 3.75 16 29 H 0.05 1.99 7.75 -2.39 -0.02 1.97 16 30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.34 6.43 -2.39 -0.02 2.33 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -54.43 269.04 2.21 -52.23 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.45 Total: 23.85 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 3.35 Total: -23.45 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -2.07 Total: -79.63 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.55 Total: -17.75 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -54.43 2.21 -52.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.412 kcal (2) G-P(sol) polarization free energy of solvation -54.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds