Wall clock time and date at job start Mon Mar 30 2020 20:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 111.00078 * 2 1 4 4 C 1.52999 * 109.47058 * 286.69873 * 3 2 1 5 5 O 1.42895 * 109.46869 * 66.18783 * 4 3 2 6 6 C 1.46903 * 110.99346 * 123.95351 * 2 1 3 7 7 H 1.08998 * 110.54070 * 298.07673 * 6 2 1 8 8 C 1.54263 * 110.48826 * 60.69664 * 6 2 1 9 9 C 1.53871 * 106.60144 * 142.28441 * 8 6 2 10 10 C 1.54268 * 106.59757 * 0.02562 * 9 8 6 11 11 H 1.08993 * 110.48826 * 95.06668 * 10 9 8 12 12 C 1.50706 * 110.59942 * 217.65658 * 10 9 8 13 13 H 1.07996 * 119.99977 * 114.83272 * 12 10 9 14 14 C 1.37874 * 119.99802 * 294.83978 * 12 10 9 15 15 N 1.31511 * 120.00133 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 120.00143 * 359.97438 * 14 12 10 17 17 H 1.48508 * 109.46965 * 90.00190 * 16 14 12 18 18 H 1.48499 * 109.47170 * 210.00022 * 16 14 12 19 19 H 1.48501 * 109.47041 * 330.00540 * 16 14 12 20 20 C 1.54891 * 110.48226 * 175.46946 * 6 2 1 21 21 H 1.08999 * 109.47040 * 304.64236 * 1 2 3 22 22 H 1.09000 * 109.46471 * 64.63897 * 1 2 3 23 23 H 1.08997 * 109.47311 * 184.63452 * 1 2 3 24 24 H 1.08991 * 109.47185 * 46.70013 * 3 2 1 25 25 H 1.08996 * 109.46540 * 166.70080 * 3 2 1 26 26 H 1.09004 * 109.47047 * 186.18704 * 4 3 2 27 27 H 1.09001 * 109.47276 * 306.18743 * 4 3 2 28 28 H 0.96704 * 113.99723 * 179.97438 * 5 4 3 29 29 H 1.09003 * 110.03619 * 22.99998 * 8 6 2 30 30 H 1.09001 * 110.07549 * 261.59208 * 8 6 2 31 31 H 1.09003 * 110.03770 * 240.71662 * 9 8 6 32 32 H 1.09002 * 110.07605 * 119.30450 * 9 8 6 33 33 H 0.97002 * 120.00180 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.75986 * 85.06050 * 20 6 2 35 35 H 1.09002 * 110.75648 * 321.69306 * 20 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7914 1.9961 -1.3817 5 8 0.3932 2.1535 -1.6312 6 6 1.9954 -0.7660 1.1377 7 1 1.6839 -0.3146 2.0796 8 6 1.5285 -2.2344 1.0622 9 6 2.7079 -3.0961 1.5460 10 6 3.8502 -2.1213 1.8992 11 1 3.8379 -1.8891 2.9641 12 6 5.1836 -2.7008 1.5024 13 1 5.7703 -2.2259 0.7300 14 6 5.6542 -3.8372 2.1253 15 7 6.8175 -4.3432 1.7786 16 14 4.6394 -4.6582 3.4616 17 1 3.7383 -5.6674 2.8492 18 1 5.5449 -5.3263 4.4306 19 1 3.8284 -3.6336 4.1671 20 6 3.5400 -0.8543 1.0635 21 1 -0.3633 0.5842 0.8455 22 1 -0.3632 0.4402 -0.9287 23 1 -0.3634 -1.0243 0.0830 24 1 1.4678 1.9632 0.7478 25 1 3.0594 1.3521 0.2364 26 1 2.2785 2.9706 -1.4154 27 1 2.2253 1.3465 -2.1418 28 1 0.1889 2.5454 -2.4914 29 1 1.2741 -2.4930 0.0343 30 1 0.6649 -2.3861 1.7097 31 1 3.0260 -3.7729 0.7529 32 1 2.4176 -3.6660 2.4287 33 1 7.1488 -5.1425 2.2171 34 1 3.9993 0.0264 1.5124 35 1 3.8707 -0.9805 0.0326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:53 Heat of formation + Delta-G solvation = -54.055064 kcal Electronic energy + Delta-G solvation = -14861.497432 eV Core-core repulsion = 12473.121840 eV Total energy + Delta-G solvation = -2388.375591 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.70859 -36.87868 -34.74782 -32.17428 -29.73508 -28.03341 -27.88097 -24.45391 -23.42790 -21.27120 -19.26216 -19.02862 -17.58744 -16.58666 -15.62235 -15.32349 -14.97749 -14.15392 -13.98645 -13.33091 -12.90037 -12.71781 -12.42643 -12.26456 -11.85688 -11.78189 -11.26082 -10.97290 -10.80688 -10.31806 -10.14535 -10.04122 -9.96498 -9.79989 -9.59680 -9.29043 -8.90075 -8.48903 -7.98024 -6.01320 -3.99208 3.33548 3.41542 3.44123 4.20760 4.31329 4.47925 5.15562 5.23229 5.33875 5.36694 5.47635 5.54562 5.68846 5.75939 5.80428 5.99216 5.99875 6.14074 6.38059 6.40567 6.46407 6.52816 6.68995 6.79425 6.91877 7.03070 7.22821 7.42233 7.50541 7.59542 7.68319 7.86501 8.60574 9.03196 9.62291 11.12139 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.056104 B = 0.007399 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.953457 B = 3783.253655 C = 4102.196417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.052 3.948 4 C 0.081 3.919 5 O -0.570 6.570 6 C 0.072 3.928 7 H 0.035 0.965 8 C -0.110 4.110 9 C -0.128 4.128 10 C 0.012 3.988 11 H 0.029 0.971 12 C -0.505 4.505 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.905 5.905 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.294 1.294 19 H -0.265 1.265 20 C -0.095 4.095 21 H 0.013 0.987 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.035 0.965 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.370 0.630 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.047 0.953 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 10.313 -4.097 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C -0.077 4.077 4 C 0.003 3.997 5 O -0.375 6.375 6 C -0.036 4.036 7 H 0.053 0.947 8 C -0.148 4.148 9 C -0.166 4.166 10 C -0.008 4.008 11 H 0.047 0.953 12 C -0.543 4.543 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.221 1.221 19 H -0.190 1.190 20 C -0.133 4.133 21 H 0.032 0.968 22 H 0.105 0.895 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.217 0.783 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.603 9.665 -3.888 15.594 hybrid contribution -0.688 0.046 0.985 1.202 sum -12.291 9.711 -2.903 15.931 Atomic orbital electron populations 1.22556 0.87641 1.00720 1.01545 1.62151 1.07756 1.12136 1.43339 1.22200 1.01039 0.89256 0.95177 1.22269 0.81618 0.98117 0.97715 1.86547 1.24570 1.85573 1.40844 1.22677 0.97126 0.93693 0.90100 0.94668 1.22147 0.97818 0.93981 1.00847 1.22582 0.95420 0.98865 0.99781 1.19938 0.94224 0.91408 0.95206 0.95297 1.21042 1.01588 1.10324 1.21355 0.90870 1.24995 0.94726 0.96903 0.96539 1.69909 1.19134 1.22533 1.42773 0.86907 0.80036 0.79941 0.82376 1.20346 1.22109 1.19033 1.22480 0.91028 0.98349 1.01399 0.96822 0.89545 0.92266 0.94679 0.88963 0.93740 0.92577 0.78300 0.91463 0.93671 0.91335 0.94292 0.92808 0.93408 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.94 60.07 0.54 0.88 16 2 N -0.53 -8.46 4.53 -232.89 -1.06 -9.51 16 3 C 0.05 0.72 5.42 -3.82 -0.02 0.70 16 4 C 0.08 0.92 7.35 37.16 0.27 1.19 16 5 O -0.57 -6.26 10.72 -35.23 -0.38 -6.63 16 6 C 0.07 1.28 2.58 -66.05 -0.17 1.11 16 7 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 8 C -0.11 -2.02 5.15 -25.62 -0.13 -2.15 16 9 C -0.13 -2.81 4.89 -25.61 -0.13 -2.94 16 10 C 0.01 0.27 2.28 -90.09 -0.21 0.07 16 11 H 0.03 0.71 7.06 -51.93 -0.37 0.34 16 12 C -0.51 -14.31 8.95 -34.44 -0.31 -14.61 16 13 H 0.07 2.24 8.01 -52.49 -0.42 1.82 16 14 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 15 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 16 Si 0.88 22.12 24.88 -169.99 -4.23 17.89 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.27 -6.43 6.41 56.52 0.36 -6.07 16 20 C -0.09 -1.92 4.67 -24.72 -0.12 -2.03 16 21 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 22 H 0.09 1.21 5.64 -51.93 -0.29 0.91 16 23 H 0.06 0.84 6.73 -51.93 -0.35 0.49 16 24 H 0.03 0.49 7.94 -51.93 -0.41 0.08 16 25 H 0.09 1.29 6.33 -51.93 -0.33 0.97 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.37 2.36 9.12 45.56 0.42 2.77 16 29 H 0.07 1.21 7.76 -51.93 -0.40 0.81 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.59 7.84 -51.93 -0.41 1.19 16 32 H 0.04 0.84 6.04 -51.93 -0.31 0.53 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 35 H 0.07 1.55 8.05 -51.93 -0.42 1.14 16 LS Contribution 267.36 15.07 4.03 4.03 Total: -1.00 -31.22 267.36 -6.20 -37.42 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.97 Total: -0.10 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -0.36 Total: -15.86 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.28 Total: -36.74 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.38 Total: -6.63 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.23 Total: 17.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.22 -6.20 -37.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.638 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds