Wall clock time and date at job start Mon Mar 30 2020 20:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46900 * 111.00078 * 2 1 4 4 C 1.52999 * 109.47058 * 286.69873 * 3 2 1 5 5 O 1.42895 * 109.46869 * 66.18783 * 4 3 2 6 6 C 1.46903 * 110.99346 * 123.95351 * 2 1 3 7 7 H 1.08998 * 110.54070 * 298.07673 * 6 2 1 8 8 C 1.54263 * 110.48826 * 60.69664 * 6 2 1 9 9 C 1.53871 * 106.60144 * 142.28441 * 8 6 2 10 10 C 1.54268 * 106.59757 * 0.02562 * 9 8 6 11 11 H 1.08993 * 110.48826 * 95.06668 * 10 9 8 12 12 C 1.50706 * 110.59942 * 217.65658 * 10 9 8 13 13 H 1.07996 * 119.99977 * 114.83272 * 12 10 9 14 14 C 1.37874 * 119.99802 * 294.83978 * 12 10 9 15 15 N 1.31511 * 120.00133 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 120.00143 * 359.97438 * 14 12 10 17 17 H 1.48508 * 109.46965 * 90.00190 * 16 14 12 18 18 H 1.48499 * 109.47170 * 210.00022 * 16 14 12 19 19 H 1.48501 * 109.47041 * 330.00540 * 16 14 12 20 20 C 1.54891 * 110.48226 * 175.46946 * 6 2 1 21 21 H 1.08999 * 109.47040 * 304.64236 * 1 2 3 22 22 H 1.09000 * 109.46471 * 64.63897 * 1 2 3 23 23 H 1.08997 * 109.47311 * 184.63452 * 1 2 3 24 24 H 1.08991 * 109.47185 * 46.70013 * 3 2 1 25 25 H 1.08996 * 109.46540 * 166.70080 * 3 2 1 26 26 H 1.09004 * 109.47047 * 186.18704 * 4 3 2 27 27 H 1.09001 * 109.47276 * 306.18743 * 4 3 2 28 28 H 0.96704 * 113.99723 * 179.97438 * 5 4 3 29 29 H 1.09003 * 110.03619 * 22.99998 * 8 6 2 30 30 H 1.09001 * 110.07549 * 261.59208 * 8 6 2 31 31 H 1.09003 * 110.03770 * 240.71662 * 9 8 6 32 32 H 1.09002 * 110.07605 * 119.30450 * 9 8 6 33 33 H 0.97002 * 120.00180 * 179.97438 * 15 14 12 34 34 H 1.08997 * 110.75986 * 85.06050 * 20 6 2 35 35 H 1.09002 * 110.75648 * 321.69306 * 20 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7914 1.9961 -1.3817 5 8 0.3932 2.1535 -1.6312 6 6 1.9954 -0.7660 1.1377 7 1 1.6839 -0.3146 2.0796 8 6 1.5285 -2.2344 1.0622 9 6 2.7079 -3.0961 1.5460 10 6 3.8502 -2.1213 1.8992 11 1 3.8379 -1.8891 2.9641 12 6 5.1836 -2.7008 1.5024 13 1 5.7703 -2.2259 0.7300 14 6 5.6542 -3.8372 2.1253 15 7 6.8175 -4.3432 1.7786 16 14 4.6394 -4.6582 3.4616 17 1 3.7383 -5.6674 2.8492 18 1 5.5449 -5.3263 4.4306 19 1 3.8284 -3.6336 4.1671 20 6 3.5400 -0.8543 1.0635 21 1 -0.3633 0.5842 0.8455 22 1 -0.3632 0.4402 -0.9287 23 1 -0.3634 -1.0243 0.0830 24 1 1.4678 1.9632 0.7478 25 1 3.0594 1.3521 0.2364 26 1 2.2785 2.9706 -1.4154 27 1 2.2253 1.3465 -2.1418 28 1 0.1889 2.5454 -2.4914 29 1 1.2741 -2.4930 0.0343 30 1 0.6649 -2.3861 1.7097 31 1 3.0260 -3.7729 0.7529 32 1 2.4176 -3.6660 2.4287 33 1 7.1488 -5.1425 2.2171 34 1 3.9993 0.0264 1.5124 35 1 3.8707 -0.9805 0.0326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149568.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:36:52 Heat of formation + Delta-G solvation = -78.046799 kcal Electronic energy + Delta-G solvation = -14862.537791 eV Core-core repulsion = 12473.121840 eV Total energy + Delta-G solvation = -2389.415951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.07653 -37.99084 -36.11518 -34.26134 -31.05151 -29.52409 -29.48856 -25.87856 -25.11297 -22.45549 -20.86917 -20.73471 -18.68853 -18.37348 -16.98537 -16.76430 -16.41512 -15.75220 -15.33711 -14.76644 -14.56047 -14.14041 -13.99080 -13.65682 -13.31030 -12.97474 -12.80708 -12.65006 -12.33451 -11.96051 -11.66084 -11.61165 -11.54283 -11.45790 -11.13328 -10.94213 -10.71579 -10.66451 -9.19549 -8.27029 -6.29623 1.34230 1.36272 1.46962 2.36204 3.02049 3.08083 3.51573 3.81232 3.98158 4.12685 4.25523 4.37205 4.54210 4.54825 4.61690 4.70406 4.77682 4.85783 4.91823 4.92607 5.02038 5.03552 5.13791 5.22474 5.34371 5.45591 5.47796 5.65765 5.81620 6.24335 6.27725 6.36948 6.76751 6.99290 7.35488 8.90055 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.056104 B = 0.007399 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.953457 B = 3783.253655 C = 4102.196417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.540 5.540 3 C 0.046 3.954 4 C 0.087 3.913 5 O -0.583 6.583 6 C 0.082 3.918 7 H 0.043 0.957 8 C -0.102 4.102 9 C -0.126 4.126 10 C 0.004 3.996 11 H 0.028 0.972 12 C -0.510 4.510 13 H 0.032 0.968 14 C 0.011 3.989 15 N -0.953 5.953 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.293 1.293 19 H -0.245 1.245 20 C -0.087 4.087 21 H 0.015 0.985 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.391 0.609 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.345 11.091 -3.547 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.264 5.264 3 C -0.082 4.082 4 C 0.009 3.991 5 O -0.392 6.392 6 C -0.026 4.026 7 H 0.061 0.939 8 C -0.140 4.140 9 C -0.165 4.165 10 C -0.015 4.015 11 H 0.046 0.954 12 C -0.548 4.548 13 H 0.050 0.950 14 C -0.186 4.186 15 N -0.594 5.594 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.220 1.220 19 H -0.169 1.169 20 C -0.125 4.125 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.241 0.759 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.123 10.474 -3.361 17.901 hybrid contribution 0.151 -0.118 0.715 0.740 sum -13.971 10.356 -2.646 17.591 Atomic orbital electron populations 1.22552 0.86421 1.01038 1.01986 1.62137 1.08824 1.13216 1.42226 1.22298 1.00563 0.88368 0.96969 1.22135 0.82179 0.98919 0.95843 1.86466 1.24069 1.85982 1.42651 1.22470 0.94838 0.93973 0.91305 0.93936 1.22076 0.97001 0.93383 1.01503 1.22445 0.96013 0.98617 0.99407 1.19932 0.92543 0.93442 0.95562 0.95351 1.21340 1.03322 1.10167 1.20022 0.95015 1.25869 0.95822 0.97688 0.99176 1.70060 1.21268 1.23437 1.44678 0.85892 0.78703 0.79393 0.79368 1.19097 1.22021 1.16916 1.22327 0.93533 0.97013 0.99663 0.96639 0.88907 0.91944 0.94569 0.89653 0.91454 0.93214 0.75869 0.91092 0.91109 0.93489 0.93689 0.92681 0.92612 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 8.94 127.69 1.14 1.86 16 2 N -0.54 -16.00 4.53 -890.73 -4.04 -20.04 16 3 C 0.05 1.19 5.42 86.30 0.47 1.66 16 4 C 0.09 1.78 7.35 71.98 0.53 2.31 16 5 O -0.58 -11.12 10.72 -148.98 -1.60 -12.72 16 6 C 0.08 2.75 2.58 45.99 0.12 2.87 16 7 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 8 C -0.10 -3.46 5.15 31.32 0.16 -3.30 16 9 C -0.13 -5.34 4.89 31.32 0.15 -5.19 16 10 C 0.00 0.21 2.28 -10.45 -0.02 0.19 16 11 H 0.03 1.34 7.06 -2.39 -0.02 1.33 16 12 C -0.51 -29.68 8.95 25.60 0.23 -29.45 16 13 H 0.03 2.04 8.01 -2.91 -0.02 2.02 16 14 C 0.01 0.64 5.46 84.65 0.46 1.10 16 15 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 16 Si 0.94 45.29 24.88 68.60 1.71 47.00 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 19 H -0.25 -10.94 6.41 99.48 0.64 -10.30 16 20 C -0.09 -3.49 4.67 31.90 0.15 -3.34 16 21 H 0.02 0.39 8.01 -2.39 -0.02 0.37 16 22 H 0.09 2.32 5.64 -2.39 -0.01 2.30 16 23 H 0.06 1.57 6.73 -2.39 -0.02 1.55 16 24 H 0.04 0.93 7.94 -2.39 -0.02 0.91 16 25 H 0.09 2.29 6.33 -2.39 -0.02 2.27 16 26 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.39 3.82 9.12 -74.05 -0.68 3.14 16 29 H 0.07 2.37 7.76 -2.39 -0.02 2.35 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.05 2.16 7.84 -2.39 -0.02 2.14 16 32 H 0.04 1.82 6.04 -2.39 -0.01 1.81 16 33 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.06 2.09 7.56 -2.39 -0.02 2.08 16 35 H 0.05 2.38 8.05 -2.39 -0.02 2.36 16 Total: -1.00 -67.51 267.36 0.07 -67.44 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.32 Total: 10.04 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.39 Total: -31.29 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -3.74 Total: -80.47 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -1.60 Total: -12.72 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.71 Total: 47.00 kcal Total: -67.51 0.07 -67.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149568.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.612 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds