Wall clock time and date at job start Mon Mar 30 2020 20:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46901 * 109.46985 * 2 1 4 4 C 1.46900 * 110.99430 * 200.67125 * 3 2 1 5 5 H 1.09004 * 109.46902 * 184.85991 * 4 3 2 6 6 C 1.52993 * 109.47356 * 304.85688 * 4 3 2 7 7 C 1.50698 * 109.47270 * 64.85902 * 4 3 2 8 8 H 1.08000 * 120.00163 * 0.02562 * 7 4 3 9 9 C 1.37885 * 120.00052 * 179.97438 * 7 4 3 10 10 N 1.31515 * 119.99995 * 179.97438 * 9 7 4 11 11 Si 1.86793 * 119.99785 * 0.02562 * 9 7 4 12 12 H 1.48501 * 109.47345 * 89.99855 * 11 9 7 13 13 H 1.48500 * 109.47299 * 209.99868 * 11 9 7 14 14 H 1.48502 * 109.47498 * 329.99425 * 11 9 7 15 15 C 1.46893 * 111.00199 * 76.71704 * 3 2 1 16 16 H 1.09002 * 110.45905 * 48.74342 * 15 3 2 17 17 C 1.54507 * 110.51167 * 286.13761 * 15 3 2 18 18 C 1.54478 * 104.06745 * 241.22009 * 17 15 3 19 19 O 1.44429 * 104.80031 * 336.02026 * 18 17 15 20 20 C 1.44428 * 105.27278 * 40.51135 * 19 18 17 21 21 H 1.09001 * 109.47090 * 290.23688 * 1 2 3 22 22 H 1.09003 * 109.46580 * 50.23872 * 1 2 3 23 23 H 1.09001 * 109.46962 * 170.24106 * 1 2 3 24 24 H 1.08996 * 109.46773 * 239.99884 * 2 1 3 25 25 H 1.08997 * 109.46643 * 120.00046 * 2 1 3 26 26 H 1.08999 * 109.47266 * 60.00509 * 6 4 3 27 27 H 1.09000 * 109.47250 * 180.02562 * 6 4 3 28 28 H 1.09007 * 109.47239 * 300.00348 * 6 4 3 29 29 H 0.96998 * 119.99798 * 179.97438 * 10 9 7 30 30 H 1.09007 * 110.50903 * 122.57137 * 17 15 3 31 31 H 1.09006 * 110.51222 * 359.86846 * 17 15 3 32 32 H 1.08993 * 110.37360 * 94.85383 * 18 17 15 33 33 H 1.08998 * 110.37162 * 217.19597 * 18 17 15 34 34 H 1.09005 * 110.37277 * 200.65177 * 20 19 18 35 35 H 1.09001 * 110.37235 * 78.31935 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4050 1.4535 -0.4841 5 1 3.7715 2.4760 -0.3929 6 6 4.2838 0.5203 0.3509 7 6 3.4535 1.0295 -1.9294 8 1 2.5461 0.7387 -2.4377 9 6 4.6564 1.0139 -2.6033 10 7 4.6989 0.6434 -3.8645 11 14 6.2258 1.5176 -1.7244 12 1 6.8462 0.3238 -1.0958 13 1 7.1728 2.1102 -2.7029 14 1 5.9063 2.5195 -0.6759 15 6 1.8981 1.9864 1.3347 16 1 2.3092 1.3190 2.0921 17 6 0.4214 2.3160 1.6475 18 6 0.4123 3.8481 1.8448 19 8 1.7669 4.1798 2.2203 20 6 2.6066 3.3584 1.3800 21 1 -0.3633 0.3555 0.9642 22 1 -0.3632 0.6573 -0.7900 23 1 -0.3633 -1.0128 -0.1742 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9173 -0.5022 0.2597 27 1 5.3118 0.5715 -0.0080 28 1 4.2487 0.8270 1.3964 29 1 5.5450 0.6328 -4.3386 30 1 0.1024 1.8115 2.5596 31 1 -0.2182 2.0348 0.8108 32 1 0.1428 4.3488 0.9149 33 1 -0.2802 4.1241 2.6399 34 1 3.5998 3.2584 1.8180 35 1 2.6737 3.7840 0.3787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261163147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:16 Heat of formation + Delta-G solvation = -27.689468 kcal Electronic energy + Delta-G solvation = -15464.542752 eV Core-core repulsion = 13077.310459 eV Total energy + Delta-G solvation = -2387.232293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52964 -36.88078 -33.09549 -31.31025 -30.71245 -28.92869 -26.87806 -25.17571 -22.79487 -22.01729 -20.77964 -18.90165 -16.69449 -16.25257 -15.70744 -15.03638 -14.90053 -14.05105 -13.83302 -13.61545 -13.02455 -12.85147 -12.33065 -12.00807 -11.97307 -11.67713 -11.23471 -11.11037 -10.98245 -10.76285 -10.50033 -10.19620 -10.08427 -9.91686 -9.54373 -9.42928 -9.02096 -8.60794 -7.44560 -6.09440 -4.07458 3.23307 3.33463 3.36300 4.21820 4.36764 4.70396 4.94384 5.12767 5.22599 5.32922 5.59532 5.60515 5.71259 5.91436 5.94860 5.97906 6.08549 6.14374 6.15525 6.18124 6.24282 6.27731 6.41878 6.49517 6.64967 6.72741 6.87040 6.98912 7.17583 7.60526 7.91429 8.04374 8.62608 8.98471 9.52601 11.03540 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.011175 C = 0.009440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.976993 B = 2504.963911 C = 2965.504631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 N -0.510 5.510 4 C 0.175 3.825 5 H 0.044 0.956 6 C -0.186 4.186 7 C -0.502 4.502 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.885 3.115 12 H -0.281 1.281 13 H -0.296 1.296 14 H -0.268 1.268 15 C 0.051 3.949 16 H 0.045 0.955 17 C -0.155 4.155 18 C 0.047 3.953 19 O -0.385 6.385 20 C 0.049 3.951 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.092 0.908 25 H 0.021 0.979 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.027 0.973 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 1.791 10.447 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.074 4.074 3 N -0.234 5.234 4 C 0.067 3.933 5 H 0.061 0.939 6 C -0.245 4.245 7 C -0.540 4.540 8 H 0.101 0.899 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.716 3.284 12 H -0.208 1.208 13 H -0.224 1.224 14 H -0.193 1.193 15 C -0.059 4.059 16 H 0.063 0.937 17 C -0.193 4.193 18 C -0.029 4.029 19 O -0.304 6.304 20 C -0.028 4.028 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.448 2.199 10.124 12.203 hybrid contribution 1.519 -0.522 0.811 1.800 sum -4.929 1.678 10.935 12.112 Atomic orbital electron populations 1.22086 0.96651 1.00722 1.01546 1.22034 0.94369 0.89689 1.01262 1.62317 1.23510 1.17831 1.19788 1.19894 0.82849 0.95326 0.95192 0.93852 1.22850 1.01240 1.02214 0.98148 1.20913 0.95600 1.44614 0.92861 0.89928 1.24915 0.98657 0.94858 0.94748 1.69876 1.26345 1.48039 1.09414 0.86909 0.83778 0.78856 0.78904 1.20802 1.22384 1.19344 1.22956 0.94799 0.95967 0.92160 0.93677 1.23318 0.97822 0.95904 1.02271 1.23378 0.84769 0.94810 0.99989 1.89053 1.16629 1.63810 1.60858 1.23623 0.94061 0.89481 0.95629 0.92997 0.91870 0.93467 0.88977 0.96070 0.92590 0.93684 0.95408 0.92616 0.91661 0.88251 0.92197 0.89953 0.89727 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.57 37.16 0.32 -1.98 16 2 C 0.05 1.00 4.27 -3.82 -0.02 0.98 16 3 N -0.51 -10.10 4.27 -218.24 -0.93 -11.03 16 4 C 0.17 3.99 1.58 -68.87 -0.11 3.88 16 5 H 0.04 1.03 4.98 -51.93 -0.26 0.77 16 6 C -0.19 -3.97 8.04 37.15 0.30 -3.67 16 7 C -0.50 -13.62 8.24 -34.44 -0.28 -13.91 16 8 H 0.08 2.46 7.49 -52.49 -0.39 2.06 16 9 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 10 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 11 Si 0.88 21.63 24.37 -169.99 -4.14 17.49 16 12 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 13 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 15 C 0.05 0.87 2.25 -66.15 -0.15 0.72 16 16 H 0.05 0.78 7.10 -51.93 -0.37 0.41 16 17 C -0.16 -2.21 5.11 -25.16 -0.13 -2.34 16 18 C 0.05 0.66 7.63 37.93 0.29 0.95 16 19 O -0.38 -6.48 11.65 -35.23 -0.41 -6.89 16 20 C 0.05 0.85 5.87 37.93 0.22 1.07 16 21 H 0.05 0.69 5.54 -51.93 -0.29 0.41 16 22 H 0.06 1.00 7.97 -51.93 -0.41 0.59 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.94 6.48 -51.93 -0.34 1.60 16 25 H 0.02 0.37 7.18 -51.93 -0.37 0.00 16 26 H 0.06 1.17 6.81 -51.93 -0.35 0.82 16 27 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 28 H 0.03 0.52 7.02 -51.92 -0.36 0.16 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 0.83 8.12 -51.93 -0.42 0.40 16 31 H 0.10 1.42 5.27 -51.93 -0.27 1.14 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 LS Contribution 256.83 15.07 3.87 3.87 Total: -1.00 -29.02 256.83 -5.74 -34.76 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.25 Total: 0.43 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 0.35 Total: -12.42 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.16 Total: -37.25 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.41 Total: -6.89 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.02 -5.74 -34.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.075 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds