Wall clock time and date at job start Mon Mar 30 2020 20:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46901 * 109.46985 * 2 1 4 4 C 1.46900 * 110.99430 * 200.67125 * 3 2 1 5 5 H 1.09004 * 109.46902 * 184.85991 * 4 3 2 6 6 C 1.52993 * 109.47356 * 304.85688 * 4 3 2 7 7 C 1.50698 * 109.47270 * 64.85902 * 4 3 2 8 8 H 1.08000 * 120.00163 * 0.02562 * 7 4 3 9 9 C 1.37885 * 120.00052 * 179.97438 * 7 4 3 10 10 N 1.31515 * 119.99995 * 179.97438 * 9 7 4 11 11 Si 1.86793 * 119.99785 * 0.02562 * 9 7 4 12 12 H 1.48501 * 109.47345 * 89.99855 * 11 9 7 13 13 H 1.48500 * 109.47299 * 209.99868 * 11 9 7 14 14 H 1.48502 * 109.47498 * 329.99425 * 11 9 7 15 15 C 1.46893 * 111.00199 * 76.71704 * 3 2 1 16 16 H 1.09002 * 110.45905 * 48.74342 * 15 3 2 17 17 C 1.54507 * 110.51167 * 286.13761 * 15 3 2 18 18 C 1.54478 * 104.06745 * 241.22009 * 17 15 3 19 19 O 1.44429 * 104.80031 * 336.02026 * 18 17 15 20 20 C 1.44428 * 105.27278 * 40.51135 * 19 18 17 21 21 H 1.09001 * 109.47090 * 290.23688 * 1 2 3 22 22 H 1.09003 * 109.46580 * 50.23872 * 1 2 3 23 23 H 1.09001 * 109.46962 * 170.24106 * 1 2 3 24 24 H 1.08996 * 109.46773 * 239.99884 * 2 1 3 25 25 H 1.08997 * 109.46643 * 120.00046 * 2 1 3 26 26 H 1.08999 * 109.47266 * 60.00509 * 6 4 3 27 27 H 1.09000 * 109.47250 * 180.02562 * 6 4 3 28 28 H 1.09007 * 109.47239 * 300.00348 * 6 4 3 29 29 H 0.96998 * 119.99798 * 179.97438 * 10 9 7 30 30 H 1.09007 * 110.50903 * 122.57137 * 17 15 3 31 31 H 1.09006 * 110.51222 * 359.86846 * 17 15 3 32 32 H 1.08993 * 110.37360 * 94.85383 * 18 17 15 33 33 H 1.08998 * 110.37162 * 217.19597 * 18 17 15 34 34 H 1.09005 * 110.37277 * 200.65177 * 20 19 18 35 35 H 1.09001 * 110.37235 * 78.31935 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4050 1.4535 -0.4841 5 1 3.7715 2.4760 -0.3929 6 6 4.2838 0.5203 0.3509 7 6 3.4535 1.0295 -1.9294 8 1 2.5461 0.7387 -2.4377 9 6 4.6564 1.0139 -2.6033 10 7 4.6989 0.6434 -3.8645 11 14 6.2258 1.5176 -1.7244 12 1 6.8462 0.3238 -1.0958 13 1 7.1728 2.1102 -2.7029 14 1 5.9063 2.5195 -0.6759 15 6 1.8981 1.9864 1.3347 16 1 2.3092 1.3190 2.0921 17 6 0.4214 2.3160 1.6475 18 6 0.4123 3.8481 1.8448 19 8 1.7669 4.1798 2.2203 20 6 2.6066 3.3584 1.3800 21 1 -0.3633 0.3555 0.9642 22 1 -0.3632 0.6573 -0.7900 23 1 -0.3633 -1.0128 -0.1742 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9173 -0.5022 0.2597 27 1 5.3118 0.5715 -0.0080 28 1 4.2487 0.8270 1.3964 29 1 5.5450 0.6328 -4.3386 30 1 0.1024 1.8115 2.5596 31 1 -0.2182 2.0348 0.8108 32 1 0.1428 4.3488 0.9149 33 1 -0.2802 4.1241 2.6399 34 1 3.5998 3.2584 1.8180 35 1 2.6737 3.7840 0.3787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261163147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:15 Heat of formation + Delta-G solvation = -49.074205 kcal Electronic energy + Delta-G solvation = -15465.470064 eV Core-core repulsion = 13077.310459 eV Total energy + Delta-G solvation = -2388.159605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88713 -38.36985 -34.98360 -33.05411 -32.01636 -30.34248 -28.29553 -27.16373 -24.17142 -23.47296 -22.20540 -20.47481 -18.63584 -17.60406 -17.18229 -16.80316 -16.22173 -15.52096 -15.43725 -15.07534 -14.69448 -14.22534 -14.14718 -13.60819 -13.50729 -13.00803 -12.84724 -12.55231 -12.48281 -12.28303 -12.07270 -11.67766 -11.63935 -11.41509 -11.28404 -10.99098 -10.76889 -10.65203 -8.99139 -8.27338 -6.28897 1.28756 1.34772 1.44012 2.31407 2.92074 3.06732 3.32781 3.69344 3.91649 4.13293 4.27064 4.32438 4.42434 4.44415 4.53529 4.54992 4.71124 4.74589 4.83865 4.85992 4.89033 4.96057 4.99696 5.08192 5.19477 5.30435 5.41365 5.46918 5.63525 5.80529 6.08208 6.42994 6.71523 6.78194 7.35138 8.89394 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.011175 C = 0.009440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.976993 B = 2504.963911 C = 2965.504631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.522 5.522 4 C 0.178 3.822 5 H 0.040 0.960 6 C -0.180 4.180 7 C -0.498 4.498 8 H 0.040 0.960 9 C 0.012 3.988 10 N -0.948 5.948 11 Si 0.945 3.055 12 H -0.270 1.270 13 H -0.300 1.300 14 H -0.248 1.248 15 C 0.048 3.952 16 H 0.053 0.947 17 C -0.149 4.149 18 C 0.043 3.957 19 O -0.395 6.395 20 C 0.049 3.951 21 H 0.076 0.924 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.264 0.736 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 2.180 13.220 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.247 5.247 4 C 0.070 3.930 5 H 0.058 0.942 6 C -0.239 4.239 7 C -0.536 4.536 8 H 0.059 0.941 9 C -0.185 4.185 10 N -0.589 5.589 11 Si 0.773 3.227 12 H -0.196 1.196 13 H -0.228 1.228 14 H -0.172 1.172 15 C -0.061 4.061 16 H 0.071 0.929 17 C -0.186 4.186 18 C -0.033 4.033 19 O -0.314 6.314 20 C -0.028 4.028 21 H 0.095 0.905 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.936 2.591 12.925 14.896 hybrid contribution 1.533 -0.645 -0.072 1.665 sum -5.403 1.945 12.854 14.078 Atomic orbital electron populations 1.22009 0.93939 1.01637 1.02482 1.22005 0.96587 0.88726 0.99915 1.62251 1.21541 1.18864 1.22036 1.19672 0.85310 0.95123 0.92878 0.94241 1.22725 0.99977 1.01717 0.99493 1.21151 0.93954 1.43295 0.95220 0.94131 1.25726 1.02253 0.95165 0.95331 1.70030 1.27237 1.50324 1.11333 0.85919 0.79443 0.79271 0.78117 1.19631 1.22788 1.17200 1.23058 0.97056 0.95540 0.90457 0.92925 1.23309 0.95609 0.96337 1.03381 1.23592 0.83975 0.94564 1.01180 1.89047 1.17866 1.63865 1.60583 1.23527 0.94754 0.89695 0.94783 0.90510 0.93118 0.91920 0.92808 0.94827 0.92781 0.94621 0.92440 0.92657 0.89112 0.88318 0.92489 0.86822 0.89247 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 8.57 71.98 0.62 -3.42 16 2 C 0.06 1.99 4.27 86.31 0.37 2.35 16 3 N -0.52 -20.16 4.27 -844.39 -3.61 -23.76 16 4 C 0.18 8.04 1.58 44.17 0.07 8.11 16 5 H 0.04 1.83 4.98 -2.39 -0.01 1.82 16 6 C -0.18 -7.36 8.04 71.98 0.58 -6.78 16 7 C -0.50 -27.79 8.24 25.60 0.21 -27.58 16 8 H 0.04 2.54 7.49 -2.91 -0.02 2.52 16 9 C 0.01 0.70 5.45 84.66 0.46 1.17 16 10 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 11 Si 0.94 44.57 24.37 68.60 1.67 46.24 16 12 H -0.27 -12.19 6.87 99.48 0.68 -11.50 16 13 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 14 H -0.25 -10.78 6.53 99.48 0.65 -10.13 16 15 C 0.05 1.51 2.25 45.93 0.10 1.62 16 16 H 0.05 1.61 7.10 -2.39 -0.02 1.59 16 17 C -0.15 -3.70 5.11 31.61 0.16 -3.54 16 18 C 0.04 1.06 7.63 72.48 0.55 1.61 16 19 O -0.39 -12.21 11.65 -148.98 -1.74 -13.95 16 20 C 0.05 1.62 5.87 72.48 0.43 2.05 16 21 H 0.08 1.78 5.54 -2.39 -0.01 1.77 16 22 H 0.05 1.55 7.97 -2.39 -0.02 1.53 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.05 2.32 6.48 -2.39 -0.02 2.31 16 25 H 0.03 1.11 7.18 -2.39 -0.02 1.09 16 26 H 0.05 2.19 6.81 -2.39 -0.02 2.18 16 27 H 0.04 1.51 3.27 -2.39 -0.01 1.51 16 28 H 0.06 1.99 7.02 -2.38 -0.02 1.97 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.09 1.84 8.12 -2.38 -0.02 1.82 16 31 H 0.10 2.50 5.27 -2.38 -0.01 2.49 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 35 H 0.06 2.07 6.99 -2.39 -0.02 2.05 16 Total: -1.00 -63.71 256.83 1.16 -62.55 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.99 Total: 12.01 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.55 Total: -24.41 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -3.31 Total: -82.43 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -1.74 Total: -13.95 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.67 Total: 46.24 kcal Total: -63.71 1.16 -62.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261163147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.471 kcal (2) G-P(sol) polarization free energy of solvation -63.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds