Wall clock time and date at job start Mon Mar 30 2020 20:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47501 * 2 1 4 4 C 1.42903 * 114.00437 * 175.44835 * 3 2 1 5 5 H 1.09009 * 109.46683 * 31.97817 * 4 3 2 6 6 C 1.50695 * 109.47196 * 271.98025 * 4 3 2 7 7 H 1.08005 * 120.00058 * 332.82487 * 6 4 3 8 8 C 1.37877 * 119.99968 * 152.83010 * 6 4 3 9 9 N 1.31514 * 120.00010 * 353.97334 * 8 6 4 10 10 Si 1.86805 * 119.99771 * 173.97160 * 8 6 4 11 11 H 1.48494 * 109.47281 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46681 * 120.00085 * 10 8 6 13 13 H 1.48498 * 109.47116 * 239.99734 * 10 8 6 14 14 C 1.52994 * 109.47206 * 151.97394 * 4 3 2 15 15 H 1.08998 * 109.50834 * 180.02562 * 14 4 3 16 16 C 1.53127 * 109.50671 * 300.20110 * 14 4 3 17 17 C 1.53124 * 109.15823 * 177.59403 * 16 14 4 18 18 C 1.53030 * 109.27662 * 302.34278 * 17 16 14 19 19 N 1.46845 * 109.52475 * 59.18708 * 18 17 16 20 20 C 1.46845 * 111.19466 * 298.25065 * 19 18 17 21 21 H 1.08998 * 109.47377 * 59.99982 * 1 2 3 22 22 H 1.09002 * 109.46919 * 300.00555 * 1 2 3 23 23 H 1.09003 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47365 * 119.99981 * 2 1 3 25 25 H 1.09003 * 109.47378 * 239.99714 * 2 1 3 26 26 H 0.96999 * 119.99410 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.51989 * 297.49491 * 16 14 4 28 28 H 1.09000 * 109.51810 * 57.69005 * 16 14 4 29 29 H 1.08999 * 109.49719 * 182.40533 * 17 16 14 30 30 H 1.08996 * 109.53211 * 62.30920 * 17 16 14 31 31 H 1.08999 * 109.46565 * 299.16112 * 18 17 16 32 32 H 1.09007 * 109.46276 * 179.19652 * 18 17 16 33 33 H 1.00904 * 111.00265 * 174.15893 * 19 18 17 34 34 H 1.08997 * 109.46531 * 301.72304 * 20 19 18 35 35 H 1.09001 * 109.46177 * 181.75674 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4270 1.4615 0.1036 5 1 3.8967 0.6074 -0.3845 6 6 3.8240 1.4903 1.5570 7 1 3.1321 1.8615 2.2986 8 6 5.0706 1.0428 1.9402 9 7 5.8679 0.4820 1.0574 10 14 5.6271 1.2334 3.7132 11 1 4.5535 1.8904 4.5011 12 1 5.9141 -0.1053 4.2884 13 1 6.8559 2.0659 3.7596 14 6 3.8858 2.7531 -0.5762 15 1 4.9694 2.8406 -0.4979 16 6 3.4784 2.7267 -2.0520 17 6 3.8877 4.0474 -2.7100 18 6 3.2285 5.2093 -1.9634 19 7 3.6503 5.1913 -0.5570 20 6 3.2267 3.9527 0.1085 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 6.7448 0.1669 1.3271 27 1 3.9800 1.8991 -2.5536 28 1 2.3985 2.6003 -2.1295 29 1 3.5622 4.0518 -3.7502 30 1 4.9714 4.1553 -2.6673 31 1 2.1447 5.1085 -2.0190 32 1 3.5293 6.1520 -2.4206 33 1 3.3051 6.0021 -0.0654 34 1 2.1428 3.8578 0.0434 35 1 3.5262 3.9825 1.1561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:28 Heat of formation + Delta-G solvation = -68.766476 kcal Electronic energy + Delta-G solvation = -15225.196148 eV Core-core repulsion = 12836.182622 eV Total energy + Delta-G solvation = -2389.013526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.23957 -36.30321 -33.03045 -31.54185 -30.79924 -29.55431 -26.33284 -23.25049 -22.89922 -21.81115 -20.53287 -18.64535 -16.50231 -15.92920 -15.41083 -14.41251 -14.23425 -13.90893 -13.63912 -13.05554 -12.95632 -12.72641 -12.24213 -11.96964 -11.79714 -11.36335 -11.03071 -10.86446 -10.78451 -10.50188 -10.41043 -10.03379 -9.82625 -9.68549 -9.25100 -9.17382 -8.43251 -8.03234 -7.78756 -6.05591 -4.11492 3.28433 3.37002 3.41392 4.40412 4.85312 5.02192 5.24957 5.49744 5.55398 5.72866 5.76485 5.93591 6.00220 6.13309 6.18187 6.28469 6.36302 6.39965 6.50439 6.64453 6.68168 6.72003 6.75055 6.79553 7.18324 7.21502 7.43847 7.69706 7.75486 7.87762 8.00971 8.32265 8.48610 9.10716 9.57045 11.00600 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.012850 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.252059 B = 2178.414734 C = 2974.358157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 O -0.403 6.403 4 C 0.209 3.791 5 H 0.042 0.958 6 C -0.530 4.530 7 H 0.060 0.940 8 C 0.067 3.933 9 N -0.892 5.892 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.282 1.282 14 C -0.058 4.058 15 H 0.079 0.921 16 C -0.117 4.117 17 C -0.116 4.116 18 C 0.062 3.938 19 N -0.695 5.695 20 C 0.078 3.922 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.330 0.670 34 H 0.025 0.975 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 3.887 -4.406 8.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.007 4.007 3 O -0.324 6.324 4 C 0.153 3.847 5 H 0.060 0.940 6 C -0.568 4.568 7 H 0.078 0.922 8 C -0.135 4.135 9 N -0.530 5.530 10 Si 0.718 3.282 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.208 1.208 14 C -0.078 4.078 15 H 0.097 0.903 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.068 4.068 19 N -0.326 5.326 20 C -0.051 4.051 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.043 0.957 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.997 3.726 -4.581 7.736 hybrid contribution -0.292 -0.042 1.081 1.121 sum -5.290 3.684 -3.500 7.335 Atomic orbital electron populations 1.21733 0.95983 1.00707 1.01947 1.22062 0.93114 0.86313 0.99256 1.87660 1.25861 1.24100 1.94762 1.19875 0.76113 0.93628 0.95106 0.94042 1.21571 0.99815 1.42114 0.93320 0.92177 1.24963 0.96888 0.94212 0.97446 1.69930 1.09451 1.39508 1.34106 0.86562 0.78809 0.77778 0.85028 1.19644 1.21112 1.20801 1.21246 1.00367 0.94723 0.91435 0.90251 1.21666 1.00595 0.95731 0.97488 1.21578 1.00952 0.95369 0.97460 1.21829 0.96577 0.98231 0.90122 1.60376 1.64626 1.05282 1.02292 1.21859 0.96653 0.88018 0.98536 0.92969 0.92526 0.92486 0.93600 0.95415 0.92798 0.92943 0.92495 0.92903 0.91712 0.96041 0.92145 0.85362 0.95666 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 37.15 0.38 -1.98 16 2 C 0.07 1.43 6.44 37.15 0.24 1.66 16 3 O -0.40 -9.43 8.57 -35.23 -0.30 -9.73 16 4 C 0.21 5.28 1.88 -27.89 -0.05 5.23 16 5 H 0.04 1.16 7.17 -51.92 -0.37 0.79 16 6 C -0.53 -14.47 7.30 -34.44 -0.25 -14.72 16 7 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 8 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 9 N -0.89 -25.52 12.88 55.43 0.71 -24.81 16 10 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 C -0.06 -1.34 2.23 -90.54 -0.20 -1.54 16 15 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 16 C -0.12 -2.33 5.17 -26.60 -0.14 -2.46 16 17 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 18 C 0.06 1.00 6.55 -3.84 -0.03 0.97 16 19 N -0.70 -12.54 6.85 -113.82 -0.78 -13.32 16 20 C 0.08 1.64 5.44 -3.83 -0.02 1.62 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 1.00 8.06 -51.92 -0.42 0.58 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.14 7.62 -51.93 -0.40 0.74 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.33 5.12 8.90 -39.29 -0.35 4.77 16 34 H 0.03 0.54 7.66 -51.93 -0.40 0.15 16 35 H 0.08 1.82 7.25 -51.93 -0.38 1.45 16 LS Contribution 280.20 15.07 4.22 4.22 Total: -1.00 -28.57 280.20 -7.58 -36.15 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.08 Total: 2.77 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.33 Total: -11.59 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.07 Total: -38.13 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.30 Total: -9.73 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.57 -7.58 -36.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.620 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds