Wall clock time and date at job start Mon Mar 30 2020 20:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.47501 * 2 1 4 4 C 1.42903 * 114.00437 * 175.44835 * 3 2 1 5 5 H 1.09009 * 109.46683 * 31.97817 * 4 3 2 6 6 C 1.50695 * 109.47196 * 271.98025 * 4 3 2 7 7 H 1.08005 * 120.00058 * 332.82487 * 6 4 3 8 8 C 1.37877 * 119.99968 * 152.83010 * 6 4 3 9 9 N 1.31514 * 120.00010 * 353.97334 * 8 6 4 10 10 Si 1.86805 * 119.99771 * 173.97160 * 8 6 4 11 11 H 1.48494 * 109.47281 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46681 * 120.00085 * 10 8 6 13 13 H 1.48498 * 109.47116 * 239.99734 * 10 8 6 14 14 C 1.52994 * 109.47206 * 151.97394 * 4 3 2 15 15 H 1.08998 * 109.50834 * 180.02562 * 14 4 3 16 16 C 1.53127 * 109.50671 * 300.20110 * 14 4 3 17 17 C 1.53124 * 109.15823 * 177.59403 * 16 14 4 18 18 C 1.53030 * 109.27662 * 302.34278 * 17 16 14 19 19 N 1.46845 * 109.52475 * 59.18708 * 18 17 16 20 20 C 1.46845 * 111.19466 * 298.25065 * 19 18 17 21 21 H 1.08998 * 109.47377 * 59.99982 * 1 2 3 22 22 H 1.09002 * 109.46919 * 300.00555 * 1 2 3 23 23 H 1.09003 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47365 * 119.99981 * 2 1 3 25 25 H 1.09003 * 109.47378 * 239.99714 * 2 1 3 26 26 H 0.96999 * 119.99410 * 180.02562 * 9 8 6 27 27 H 1.08998 * 109.51989 * 297.49491 * 16 14 4 28 28 H 1.09000 * 109.51810 * 57.69005 * 16 14 4 29 29 H 1.08999 * 109.49719 * 182.40533 * 17 16 14 30 30 H 1.08996 * 109.53211 * 62.30920 * 17 16 14 31 31 H 1.08999 * 109.46565 * 299.16112 * 18 17 16 32 32 H 1.09007 * 109.46276 * 179.19652 * 18 17 16 33 33 H 1.00904 * 111.00265 * 174.15893 * 19 18 17 34 34 H 1.08997 * 109.46531 * 301.72304 * 20 19 18 35 35 H 1.09001 * 109.46177 * 181.75674 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4270 1.4615 0.1036 5 1 3.8967 0.6074 -0.3845 6 6 3.8240 1.4903 1.5570 7 1 3.1321 1.8615 2.2986 8 6 5.0706 1.0428 1.9402 9 7 5.8679 0.4820 1.0574 10 14 5.6271 1.2334 3.7132 11 1 4.5535 1.8904 4.5011 12 1 5.9141 -0.1053 4.2884 13 1 6.8559 2.0659 3.7596 14 6 3.8858 2.7531 -0.5762 15 1 4.9694 2.8406 -0.4979 16 6 3.4784 2.7267 -2.0520 17 6 3.8877 4.0474 -2.7100 18 6 3.2285 5.2093 -1.9634 19 7 3.6503 5.1913 -0.5570 20 6 3.2267 3.9527 0.1085 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 6.7448 0.1669 1.3271 27 1 3.9800 1.8991 -2.5536 28 1 2.3985 2.6003 -2.1295 29 1 3.5622 4.0518 -3.7502 30 1 4.9714 4.1553 -2.6673 31 1 2.1447 5.1085 -2.0190 32 1 3.5293 6.1520 -2.4206 33 1 3.3051 6.0021 -0.0654 34 1 2.1428 3.8578 0.0434 35 1 3.5262 3.9825 1.1561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:28 Heat of formation + Delta-G solvation = -88.052417 kcal Electronic energy + Delta-G solvation = -15226.032450 eV Core-core repulsion = 12836.182622 eV Total energy + Delta-G solvation = -2389.849827 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.93328 -38.00452 -35.00960 -33.24986 -32.37584 -31.11170 -28.31799 -25.06461 -24.48827 -23.38565 -22.22516 -20.32344 -18.58826 -17.51090 -17.24025 -16.24958 -16.05207 -15.37526 -15.27945 -14.77149 -14.52239 -14.40232 -13.88826 -13.48609 -13.36516 -12.95518 -12.91325 -12.62629 -12.46915 -12.28375 -11.97075 -11.79727 -11.59428 -11.41739 -11.09710 -10.93700 -10.50485 -9.97456 -9.26068 -8.17795 -6.30747 1.36567 1.39332 1.50735 2.38506 3.08801 3.31125 3.45692 4.07307 4.14969 4.20485 4.28523 4.45073 4.50500 4.65346 4.69347 4.80252 4.82926 4.93164 4.95896 5.09283 5.13796 5.14971 5.18198 5.22298 5.35601 5.48813 5.61199 5.67448 5.82684 6.21528 6.24688 6.48897 6.66813 7.02599 7.42378 8.87987 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021155 B = 0.012850 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.252059 B = 2178.414734 C = 2974.358157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 O -0.408 6.408 4 C 0.215 3.785 5 H 0.006 0.994 6 C -0.541 4.541 7 H 0.050 0.950 8 C 0.020 3.980 9 N -0.923 5.923 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.278 1.278 14 C -0.056 4.056 15 H 0.043 0.957 16 C -0.111 4.111 17 C -0.112 4.112 18 C 0.061 3.939 19 N -0.701 5.701 20 C 0.093 3.907 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.024 0.976 25 H 0.030 0.970 26 H 0.264 0.736 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.347 0.653 34 H 0.021 0.979 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 5.011 -4.803 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 O -0.328 6.328 4 C 0.159 3.841 5 H 0.024 0.976 6 C -0.579 4.579 7 H 0.068 0.932 8 C -0.179 4.179 9 N -0.562 5.562 10 Si 0.778 3.222 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.203 1.203 14 C -0.075 4.075 15 H 0.061 0.939 16 C -0.149 4.149 17 C -0.150 4.150 18 C -0.068 4.068 19 N -0.333 5.333 20 C -0.036 4.036 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.165 0.835 34 H 0.039 0.961 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.044 4.863 -4.980 9.218 hybrid contribution -0.007 -0.436 1.170 1.249 sum -6.051 4.427 -3.810 8.410 Atomic orbital electron populations 1.21682 0.92121 1.02928 1.02443 1.22314 0.96197 0.84762 0.98350 1.87634 1.24504 1.26004 1.94706 1.19676 0.76918 0.93496 0.94053 0.97641 1.21762 0.99928 1.41942 0.94235 0.93201 1.25696 0.96926 0.93912 1.01384 1.70041 1.09796 1.40394 1.35974 0.85595 0.78385 0.77929 0.80332 1.19106 1.20443 1.20331 1.21041 0.98109 0.94504 0.93858 0.93884 1.21578 1.00380 0.97605 0.95349 1.21582 1.00553 0.93723 0.99142 1.21944 0.96949 0.99313 0.88573 1.60283 1.64982 1.04484 1.03573 1.21509 0.95896 0.88914 0.97296 0.91815 0.92613 0.89441 0.95780 0.95164 0.92659 0.93886 0.92405 0.89643 0.92616 0.95282 0.88865 0.83452 0.96065 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 10.28 71.98 0.74 -3.36 16 2 C 0.06 2.49 6.44 71.98 0.46 2.96 16 3 O -0.41 -19.36 8.57 -148.98 -1.28 -20.64 16 4 C 0.22 11.27 1.88 29.84 0.06 11.33 16 5 H 0.01 0.33 7.17 -2.38 -0.02 0.32 16 6 C -0.54 -30.42 7.30 25.60 0.19 -30.23 16 7 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 8 C 0.02 1.13 5.45 84.65 0.46 1.59 16 9 N -0.92 -54.41 12.88 21.45 0.28 -54.14 16 10 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 C -0.06 -2.61 2.23 -10.74 -0.02 -2.64 16 15 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.11 -4.39 5.17 30.68 0.16 -4.23 16 17 C -0.11 -3.55 6.09 30.65 0.19 -3.36 16 18 C 0.06 1.78 6.55 86.32 0.57 2.35 16 19 N -0.70 -24.14 6.85 -514.02 -3.52 -27.66 16 20 C 0.09 3.93 5.44 86.33 0.47 4.40 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.02 1.07 8.06 -2.38 -0.02 1.05 16 25 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 2.25 7.62 -2.39 -0.02 2.24 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.35 10.00 8.90 -89.69 -0.80 9.20 16 34 H 0.02 0.91 7.66 -2.39 -0.02 0.89 16 35 H 0.06 2.61 7.25 -2.39 -0.02 2.60 16 Total: -1.00 -62.74 280.20 1.02 -61.73 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.25 Total: 15.49 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 3.26 Total: -21.20 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.24 Total: -81.80 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.28 Total: -20.64 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -62.74 1.02 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.326 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds