Wall clock time and date at job start Mon Mar 30 2020 20:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46954 * 110.99890 * 2 1 4 4 C 1.53055 * 109.36536 * 183.18814 * 3 2 1 5 5 N 1.46954 * 109.36241 * 301.59818 * 4 3 2 6 6 C 1.46897 * 110.99887 * 183.18641 * 5 4 3 7 7 C 1.52996 * 109.47242 * 169.99830 * 6 5 4 8 8 H 1.09004 * 109.47066 * 65.00208 * 7 6 5 9 9 N 1.46899 * 109.47336 * 305.00055 * 7 6 5 10 10 C 1.50702 * 109.47159 * 185.00005 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.46954 * 110.88052 * 59.32074 * 5 4 3 19 19 C 1.46962 * 111.00138 * 123.79751 * 2 1 3 20 20 H 1.08999 * 109.47304 * 60.00305 * 1 2 3 21 21 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47513 * 300.00120 * 1 2 3 23 23 H 1.09004 * 109.49182 * 63.21765 * 3 2 1 24 24 H 1.09002 * 109.51024 * 303.16623 * 3 2 1 25 25 H 1.09000 * 109.48477 * 181.63146 * 4 3 2 26 26 H 1.08995 * 109.50447 * 61.57536 * 4 3 2 27 27 H 1.09009 * 109.47214 * 50.00014 * 6 5 4 28 28 H 1.09003 * 109.47528 * 290.00321 * 6 5 4 29 29 H 1.00903 * 111.00048 * 300.00004 * 9 7 6 30 30 H 1.00904 * 110.99882 * 63.95194 * 9 7 6 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.48877 * 60.64710 * 18 5 4 33 33 H 1.09002 * 109.48644 * 180.71248 * 18 5 4 34 34 H 1.09000 * 109.48821 * 296.78148 * 19 2 1 35 35 H 1.08997 * 109.48570 * 56.82207 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0598 6 6 5.5190 0.5659 1.0598 7 6 6.0290 -0.0161 2.3796 8 1 5.7407 -1.0649 2.4497 9 7 5.4433 0.7288 3.5021 10 6 7.5309 0.0965 2.4312 11 1 8.0680 0.5393 1.6054 12 6 8.2190 -0.3601 3.5354 13 7 9.5292 -0.2569 3.5828 14 14 7.2901 -1.1254 4.9640 15 1 7.1649 -2.5890 4.7458 16 1 8.0303 -0.8748 6.2268 17 1 5.9367 -0.5209 5.0551 18 6 3.5234 -0.8060 1.0598 19 6 1.9957 -0.7632 1.1401 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6936 1.8774 0.9173 24 1 1.6013 1.9132 -0.8600 25 1 3.9176 2.3449 -0.0512 26 1 3.8256 0.8482 -1.0106 27 1 5.8824 1.5877 0.9488 28 1 5.8824 -0.0410 0.2305 29 1 5.6962 1.7047 3.4597 30 1 4.4409 0.6158 3.5273 31 1 10.0132 -0.5785 4.3594 32 1 3.8254 -1.3114 0.1425 33 1 3.9178 -1.3468 1.9201 34 1 1.6937 -0.2820 2.0704 35 1 1.6010 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261259786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:36 Heat of formation + Delta-G solvation = 20.312265 kcal Electronic energy + Delta-G solvation = -14975.934381 eV Core-core repulsion = 12623.076350 eV Total energy + Delta-G solvation = -2352.858031 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.154 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.17430 -36.15008 -33.63009 -31.56170 -30.79506 -28.63825 -26.59249 -24.63414 -23.53486 -22.77933 -19.89166 -19.30549 -16.96963 -15.77287 -15.15548 -14.92372 -14.82326 -14.45480 -14.25404 -13.94381 -13.59055 -12.65732 -12.63464 -12.46171 -12.15310 -11.77719 -11.68733 -11.17227 -10.99097 -10.78688 -10.64852 -10.45293 -9.87389 -9.67321 -9.04812 -8.45241 -8.41722 -7.97074 -6.91611 -5.93243 -4.02351 3.56952 3.67190 3.89754 4.01371 4.25730 4.79384 4.96310 5.00195 5.18785 5.30111 5.40477 5.42495 5.52221 5.53898 5.62011 5.70246 5.81659 5.99190 6.00817 6.10071 6.15807 6.20503 6.42726 6.62460 6.93867 6.97284 7.15938 7.33953 7.49550 7.81492 8.36459 8.54633 8.90812 9.07834 9.73315 11.17049 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055563 B = 0.007678 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.807262 B = 3645.861997 C = 3914.540417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.059 3.941 4 C 0.057 3.943 5 N -0.541 5.541 6 C 0.036 3.964 7 C 0.195 3.805 8 H 0.031 0.969 9 N -0.830 5.830 10 C -0.527 4.527 11 H 0.065 0.935 12 C 0.083 3.917 13 N -0.905 5.905 14 Si 0.868 3.132 15 H -0.300 1.300 16 H -0.306 1.306 17 H -0.190 1.190 18 C 0.054 3.946 19 C 0.058 3.942 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.024 0.976 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.325 0.675 30 H 0.312 0.688 31 H 0.261 0.739 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.312 1.407 -5.812 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.069 4.069 4 C -0.072 4.072 5 N -0.266 5.266 6 C -0.093 4.093 7 C 0.085 3.915 8 H 0.049 0.951 9 N -0.359 5.359 10 C -0.566 4.566 11 H 0.084 0.916 12 C -0.120 4.120 13 N -0.543 5.543 14 Si 0.695 3.305 15 H -0.228 1.228 16 H -0.234 1.234 17 H -0.111 1.111 18 C -0.074 4.074 19 C -0.070 4.070 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.733 0.912 -5.252 17.561 hybrid contribution -0.614 0.120 -0.144 0.642 sum -17.347 1.032 -5.396 18.196 Atomic orbital electron populations 1.22328 0.87632 1.01845 1.00417 1.62163 1.07424 1.14208 1.43385 1.22157 0.95153 0.89043 1.00547 1.22104 0.93622 0.98721 0.92740 1.62212 1.09774 1.13183 1.41470 1.22984 0.83778 1.01255 1.01272 1.19355 0.94960 0.93225 0.83952 0.95122 1.59964 1.13208 1.15359 1.47323 1.20840 0.88520 1.42351 1.04851 0.91650 1.24976 0.94412 0.94083 0.98536 1.69974 1.07329 1.46692 1.30273 0.87199 0.85348 0.77708 0.80195 1.22804 1.23399 1.11106 1.22173 0.93223 0.90489 1.01520 1.22194 0.95318 0.97917 0.91568 0.91615 0.91543 0.95752 0.94141 0.90843 0.90633 0.94493 0.91478 0.95395 0.86278 0.87625 0.92967 0.94393 0.89605 0.94021 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.60 60.06 0.58 0.83 16 2 N -0.55 -6.83 4.97 -242.75 -1.21 -8.03 16 3 C 0.06 0.73 5.62 -3.77 -0.02 0.71 16 4 C 0.06 0.80 5.61 -3.77 -0.02 0.78 16 5 N -0.54 -8.84 3.94 -234.47 -0.92 -9.76 16 6 C 0.04 0.71 4.56 -3.83 -0.02 0.69 16 7 C 0.20 4.45 1.94 -68.87 -0.13 4.32 16 8 H 0.03 0.73 6.17 -51.93 -0.32 0.41 16 9 N -0.83 -17.54 5.77 -5.65 -0.03 -17.57 16 10 C -0.53 -14.86 9.31 -34.44 -0.32 -15.18 16 11 H 0.07 2.01 7.99 -52.49 -0.42 1.59 16 12 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 13 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 14 Si 0.87 22.16 26.94 -169.99 -4.58 17.58 16 15 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 16 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 17 H -0.19 -4.49 5.16 56.52 0.29 -4.20 16 18 C 0.05 0.84 5.41 -3.77 -0.02 0.82 16 19 C 0.06 0.76 5.62 -3.77 -0.02 0.74 16 20 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.35 8.03 -51.92 -0.42 0.93 16 28 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.33 6.81 8.99 -39.29 -0.35 6.46 16 30 H 0.31 5.97 8.39 -39.29 -0.33 5.64 16 31 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.42 6.45 -51.93 -0.33 1.08 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -30.79 271.84 -8.01 -38.80 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.06 Total: 6.55 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.08 Total: -3.93 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -1.39 Total: -63.11 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.58 Total: 17.58 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.79 -8.01 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.115 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds