Wall clock time and date at job start Mon Mar 30 2020 20:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46954 * 110.99890 * 2 1 4 4 C 1.53055 * 109.36536 * 183.18814 * 3 2 1 5 5 N 1.46954 * 109.36241 * 301.59818 * 4 3 2 6 6 C 1.46897 * 110.99887 * 183.18641 * 5 4 3 7 7 C 1.52996 * 109.47242 * 169.99830 * 6 5 4 8 8 H 1.09004 * 109.47066 * 65.00208 * 7 6 5 9 9 N 1.46899 * 109.47336 * 305.00055 * 7 6 5 10 10 C 1.50702 * 109.47159 * 185.00005 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.46954 * 110.88052 * 59.32074 * 5 4 3 19 19 C 1.46962 * 111.00138 * 123.79751 * 2 1 3 20 20 H 1.08999 * 109.47304 * 60.00305 * 1 2 3 21 21 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47513 * 300.00120 * 1 2 3 23 23 H 1.09004 * 109.49182 * 63.21765 * 3 2 1 24 24 H 1.09002 * 109.51024 * 303.16623 * 3 2 1 25 25 H 1.09000 * 109.48477 * 181.63146 * 4 3 2 26 26 H 1.08995 * 109.50447 * 61.57536 * 4 3 2 27 27 H 1.09009 * 109.47214 * 50.00014 * 6 5 4 28 28 H 1.09003 * 109.47528 * 290.00321 * 6 5 4 29 29 H 1.00903 * 111.00048 * 300.00004 * 9 7 6 30 30 H 1.00904 * 110.99882 * 63.95194 * 9 7 6 31 31 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.48877 * 60.64710 * 18 5 4 33 33 H 1.09002 * 109.48644 * 180.71248 * 18 5 4 34 34 H 1.09000 * 109.48821 * 296.78148 * 19 2 1 35 35 H 1.08997 * 109.48570 * 56.82207 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0500 0.5659 1.0598 6 6 5.5190 0.5659 1.0598 7 6 6.0290 -0.0161 2.3796 8 1 5.7407 -1.0649 2.4497 9 7 5.4433 0.7288 3.5021 10 6 7.5309 0.0965 2.4312 11 1 8.0680 0.5393 1.6054 12 6 8.2190 -0.3601 3.5354 13 7 9.5292 -0.2569 3.5828 14 14 7.2901 -1.1254 4.9640 15 1 7.1649 -2.5890 4.7458 16 1 8.0303 -0.8748 6.2268 17 1 5.9367 -0.5209 5.0551 18 6 3.5234 -0.8060 1.0598 19 6 1.9957 -0.7632 1.1401 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6936 1.8774 0.9173 24 1 1.6013 1.9132 -0.8600 25 1 3.9176 2.3449 -0.0512 26 1 3.8256 0.8482 -1.0106 27 1 5.8824 1.5877 0.9488 28 1 5.8824 -0.0410 0.2305 29 1 5.6962 1.7047 3.4597 30 1 4.4409 0.6158 3.5273 31 1 10.0132 -0.5785 4.3594 32 1 3.8254 -1.3114 0.1425 33 1 3.9178 -1.3468 1.9201 34 1 1.6937 -0.2820 2.0704 35 1 1.6010 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259786.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:36 Heat of formation + Delta-G solvation = -4.881638 kcal Electronic energy + Delta-G solvation = -14977.026871 eV Core-core repulsion = 12623.076350 eV Total energy + Delta-G solvation = -2353.950520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.34561 -37.58065 -35.26418 -33.62452 -31.89672 -29.89191 -28.39124 -26.11756 -24.66883 -24.03908 -21.45958 -20.64809 -19.00871 -17.05395 -16.65910 -16.20012 -16.05101 -15.85263 -15.71219 -15.42588 -14.99265 -14.48852 -14.20921 -13.69476 -13.40845 -13.04496 -12.85598 -12.74533 -12.30295 -12.28869 -12.20020 -11.92775 -11.66916 -11.41877 -11.16382 -10.68158 -9.43961 -9.24916 -8.69164 -8.22109 -6.34712 1.52541 1.59762 1.98048 2.64635 2.92309 3.00387 3.18822 3.90963 4.04033 4.09398 4.27362 4.29561 4.42851 4.47796 4.56451 4.63256 4.65475 4.72302 4.82401 4.89449 4.93436 4.99572 5.02595 5.08421 5.34700 5.59084 5.96743 5.99370 6.14669 6.17765 6.20761 6.62328 6.87599 7.21236 7.44934 8.91667 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055563 B = 0.007678 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.807262 B = 3645.861997 C = 3914.540417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.066 3.934 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.051 3.949 7 C 0.205 3.795 8 H 0.029 0.971 9 N -0.829 5.829 10 C -0.528 4.528 11 H 0.024 0.976 12 C 0.024 3.976 13 N -0.956 5.956 14 Si 0.932 3.068 15 H -0.303 1.303 16 H -0.317 1.317 17 H -0.155 1.155 18 C 0.053 3.947 19 C 0.066 3.934 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.040 0.960 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.012 0.988 29 H 0.330 0.670 30 H 0.331 0.669 31 H 0.261 0.739 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.450 1.448 -5.524 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.286 5.286 3 C -0.062 4.062 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.079 4.079 7 C 0.094 3.906 8 H 0.047 0.953 9 N -0.358 5.358 10 C -0.566 4.566 11 H 0.043 0.957 12 C -0.174 4.174 13 N -0.596 5.596 14 Si 0.758 3.242 15 H -0.231 1.231 16 H -0.245 1.245 17 H -0.075 1.075 18 C -0.075 4.075 19 C -0.062 4.062 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.915 0.964 -4.987 20.553 hybrid contribution 0.376 0.142 -0.355 0.537 sum -19.539 1.106 -5.342 20.286 Atomic orbital electron populations 1.22381 0.85662 1.02786 1.01220 1.62170 1.09226 1.14122 1.43057 1.22118 0.93279 0.89363 1.01486 1.22199 0.95340 0.98448 0.91348 1.62179 1.07200 1.14062 1.42718 1.22606 0.86291 1.00109 0.98865 1.19044 0.91693 0.93614 0.86249 0.95294 1.59669 1.14533 1.15469 1.46154 1.21181 0.91519 1.40772 1.03170 0.95747 1.25918 0.95041 0.94866 1.01589 1.70119 1.09266 1.48879 1.31288 0.86284 0.85416 0.76496 0.76025 1.23142 1.24535 1.07504 1.22204 0.95273 0.89581 1.00486 1.22109 0.93134 0.99096 0.91900 0.90387 0.90621 0.95317 0.94159 0.88771 0.90047 0.95339 0.92171 0.97015 0.85838 0.85564 0.93059 0.95477 0.90659 0.93985 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 127.69 1.23 1.66 16 2 N -0.56 -12.22 4.97 -921.93 -4.58 -16.80 16 3 C 0.07 1.41 5.62 86.31 0.49 1.89 16 4 C 0.05 1.45 5.61 86.31 0.48 1.93 16 5 N -0.54 -16.62 3.94 -895.74 -3.53 -20.16 16 6 C 0.05 1.99 4.56 86.30 0.39 2.38 16 7 C 0.20 9.18 1.94 44.17 0.09 9.26 16 8 H 0.03 1.34 6.17 -2.38 -0.01 1.32 16 9 N -0.83 -33.03 5.77 -171.80 -0.99 -34.02 16 10 C -0.53 -30.29 9.31 25.60 0.24 -30.05 16 11 H 0.02 1.56 7.99 -2.91 -0.02 1.53 16 12 C 0.02 1.42 5.47 84.66 0.46 1.88 16 13 N -0.96 -61.85 13.96 21.45 0.30 -61.55 16 14 Si 0.93 45.69 26.94 68.60 1.85 47.53 16 15 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 16 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 17 H -0.15 -6.69 5.16 99.48 0.51 -6.18 16 18 C 0.05 1.54 5.41 86.31 0.47 2.01 16 19 C 0.07 1.52 5.62 86.31 0.49 2.01 16 20 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 21 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 22 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 25 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 26 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 2.41 8.03 -2.38 -0.02 2.39 16 28 H 0.01 0.48 8.12 -2.39 -0.02 0.46 16 29 H 0.33 13.09 8.99 -89.69 -0.81 12.28 16 30 H 0.33 11.53 8.39 -89.69 -0.75 10.77 16 31 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 2.35 6.45 -2.39 -0.02 2.33 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.82 8.13 -2.39 -0.02 1.80 16 Total: -1.00 -66.70 271.84 -3.31 -70.02 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.69 Total: 21.99 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.33 Total: -7.02 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -8.80 Total: -132.52 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.85 Total: 47.53 kcal Total: -66.70 -3.31 -70.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259786.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.134 kcal (2) G-P(sol) polarization free energy of solvation -66.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds