Wall clock time and date at job start Mon Mar 30 2020 20:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47653 * 2 1 4 4 C 1.42898 * 114.00419 * 175.07745 * 3 2 1 5 5 C 1.50696 * 109.57039 * 304.98498 * 4 3 2 6 6 H 1.08004 * 120.00018 * 125.54462 * 5 4 3 7 7 C 1.37871 * 120.00112 * 305.53863 * 5 4 3 8 8 N 1.31514 * 120.00224 * 355.10818 * 7 5 4 9 9 Si 1.86801 * 120.00220 * 175.10355 * 7 5 4 10 10 H 1.48497 * 109.47369 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47409 * 300.00326 * 9 7 5 12 12 H 1.48504 * 109.46783 * 60.00205 * 9 7 5 13 13 C 1.54525 * 109.57016 * 65.23314 * 4 3 2 14 14 C 1.45881 * 111.67418 * 42.71056 * 13 4 3 15 15 C 1.53969 * 112.66904 * 61.49604 * 14 13 4 16 16 N 1.44310 * 108.31340 * 278.59881 * 15 14 13 17 17 C 1.47937 * 113.64790 * 95.39749 * 16 15 14 18 18 C 1.50537 * 109.67688 * 184.66938 * 4 3 2 19 19 H 1.09005 * 109.46751 * 59.99608 * 1 2 3 20 20 H 1.08997 * 109.47477 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46867 * 300.00231 * 1 2 3 22 22 H 1.09002 * 109.47322 * 240.00027 * 2 1 3 23 23 H 1.09005 * 109.47154 * 120.00037 * 2 1 3 24 24 H 0.96995 * 120.00355 * 179.97438 * 8 7 5 25 25 H 1.09001 * 109.03900 * 163.27871 * 13 4 3 26 26 H 1.09008 * 109.03843 * 282.14812 * 13 4 3 27 27 H 1.08998 * 108.84152 * 182.31876 * 14 13 4 28 28 H 1.09000 * 108.83834 * 300.77831 * 14 13 4 29 29 H 1.08998 * 109.70067 * 38.30131 * 15 14 13 30 30 H 1.09000 * 109.69901 * 158.88903 * 15 14 13 31 31 H 1.00902 * 110.99836 * 221.35013 * 16 15 14 32 32 H 1.08996 * 108.71454 * 79.12924 * 17 16 15 33 33 H 1.08994 * 108.71091 * 197.27396 * 17 16 15 34 34 H 1.09000 * 108.78428 * 92.76710 * 18 4 3 35 35 H 1.08995 * 108.78844 * 210.98703 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4617 0.1120 5 6 3.8970 0.7242 1.3390 6 1 4.6624 -0.0330 1.2536 7 6 3.3507 1.0162 2.5707 8 7 2.4896 2.0030 2.6910 9 14 3.8333 0.0102 4.0689 10 1 3.1112 0.5209 5.2617 11 1 3.4746 -1.4135 3.8457 12 1 5.2974 0.1230 4.2901 13 6 4.0950 0.8576 -1.1433 14 6 3.3972 1.2447 -2.3645 15 6 3.3982 2.7677 -2.5911 16 7 2.3465 3.3460 -1.7898 17 6 2.8093 3.8516 -0.4787 18 6 3.8112 2.9132 0.2174 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.1049 2.2082 3.5574 25 1 5.1270 1.2042 -1.1982 26 1 4.0903 -0.2294 -1.0605 27 1 3.8803 0.7621 -3.2141 28 1 2.3650 0.8999 -2.3044 29 1 4.3599 3.1833 -2.2903 30 1 3.2179 2.9825 -3.6444 31 1 1.8554 4.0638 -2.3013 32 1 3.2832 4.8221 -0.6257 33 1 1.9440 3.9806 0.1714 34 1 3.8724 3.1845 1.2713 35 1 4.7932 3.0498 -0.2356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293195.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:37:49 Heat of formation + Delta-G solvation = -43.690357 kcal Electronic energy + Delta-G solvation = -16005.444133 eV Core-core repulsion = 13617.517989 eV Total energy + Delta-G solvation = -2387.926144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -38.47758 -35.26679 -32.69075 -31.94484 -30.72539 -28.95655 -25.94490 -24.44244 -22.79727 -21.24721 -19.22597 -18.54990 -16.74984 -15.57557 -14.91305 -14.44299 -14.20110 -13.68498 -13.59731 -12.93254 -12.34219 -12.21939 -12.04337 -11.66744 -11.10640 -10.93828 -10.79581 -10.69684 -10.57195 -10.37047 -10.20847 -9.90346 -9.72199 -9.49619 -9.17050 -8.57208 -8.33136 -7.52628 -7.31749 -5.90343 -4.07144 3.31755 3.37189 3.40004 4.44164 5.04756 5.27038 5.58436 5.68211 5.84274 6.01301 6.10420 6.23514 6.27099 6.37478 6.44382 6.60203 6.63544 6.70607 6.75037 6.88761 6.98717 7.09692 7.12872 7.27732 7.33838 7.38851 7.61912 7.85769 8.09109 8.11382 8.27615 8.38754 8.91258 9.36541 9.66489 11.08955 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032395 B = 0.013311 C = 0.012063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.125937 B = 2102.996060 C = 2320.555088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 O -0.337 6.337 4 C 0.256 3.744 5 C -0.557 4.557 6 H 0.051 0.949 7 C 0.083 3.917 8 N -0.851 5.851 9 Si 0.878 3.122 10 H -0.287 1.287 11 H -0.277 1.277 12 H -0.278 1.278 13 C -0.139 4.139 14 C -0.107 4.107 15 C 0.076 3.924 16 N -0.681 5.681 17 C 0.088 3.912 18 C -0.086 4.086 19 H 0.047 0.953 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.012 0.988 23 H 0.046 0.954 24 H 0.258 0.742 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.046 0.954 31 H 0.324 0.676 32 H -0.004 1.004 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 0.777 -6.495 6.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 O -0.256 6.256 4 C 0.217 3.783 5 C -0.595 4.595 6 H 0.069 0.931 7 C -0.123 4.123 8 N -0.486 5.486 9 Si 0.706 3.294 10 H -0.213 1.213 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.177 4.177 14 C -0.145 4.145 15 C -0.055 4.055 16 N -0.311 5.311 17 C -0.040 4.040 18 C -0.124 4.124 19 H 0.066 0.934 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.030 0.970 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.014 0.986 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.790 0.467 -6.112 6.181 hybrid contribution 0.986 -0.097 0.658 1.190 sum 0.196 0.370 -5.454 5.470 Atomic orbital electron populations 1.21653 0.96998 0.99471 1.01718 1.21837 0.92204 0.88165 0.98227 1.87990 1.22320 1.21839 1.93426 1.18466 0.79531 0.91250 0.89037 1.21553 1.23296 1.22136 0.92492 0.93055 1.24922 0.94625 0.94545 0.98177 1.70026 1.27876 1.26972 1.23748 0.86908 0.78614 0.81030 0.82890 1.21296 1.20309 1.20385 1.21194 0.98813 1.00226 0.97441 1.20455 1.02074 0.95242 0.96718 1.21474 0.93379 0.95916 0.94711 1.58897 1.29234 1.38240 1.04730 1.22003 0.99162 0.93488 0.89392 1.21311 0.94192 0.95483 1.01383 0.93369 0.93708 0.92668 0.97035 0.93545 0.93165 0.94099 0.93634 0.94904 0.90819 0.95265 0.93544 0.85916 0.98592 0.90828 0.89324 0.95440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 10.28 37.16 0.38 -2.41 16 2 C 0.07 1.68 5.60 37.16 0.21 1.89 16 3 O -0.34 -8.34 6.52 -35.23 -0.23 -8.57 16 4 C 0.26 6.25 0.29 -92.20 -0.03 6.22 16 5 C -0.56 -14.93 6.45 -34.44 -0.22 -15.16 16 6 H 0.05 1.39 7.76 -52.48 -0.41 0.99 16 7 C 0.08 2.23 4.67 -17.82 -0.08 2.15 16 8 N -0.85 -23.48 11.28 55.43 0.63 -22.86 16 9 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C -0.14 -3.02 3.76 -29.30 -0.11 -3.13 16 14 C -0.11 -2.04 5.13 -29.60 -0.15 -2.19 16 15 C 0.08 1.33 6.15 -4.70 -0.03 1.31 16 16 N -0.68 -12.85 5.50 -113.79 -0.63 -13.48 16 17 C 0.09 1.83 5.86 -2.77 -0.02 1.82 16 18 C -0.09 -2.02 4.44 -27.48 -0.12 -2.14 16 19 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.01 0.26 6.34 -51.93 -0.33 -0.07 16 23 H 0.05 1.17 6.59 -51.93 -0.34 0.83 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.04 0.87 7.59 -51.93 -0.39 0.47 16 26 H 0.04 1.00 7.59 -51.92 -0.39 0.61 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.52 6.08 -51.93 -0.32 1.21 16 29 H 0.03 0.53 6.79 -51.93 -0.35 0.18 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.32 5.23 8.89 -39.29 -0.35 4.88 16 32 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.09 2.33 6.21 -51.93 -0.32 2.01 16 35 H 0.03 0.61 6.66 -51.93 -0.35 0.27 16 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -27.73 262.60 -7.11 -34.85 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.65 Total: 1.83 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -0.17 Total: -11.64 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.00 Total: -36.33 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.23 Total: -8.57 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.73 -7.11 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293195.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.845 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds