Wall clock time and date at job start Mon Mar 30 2020 20:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00144 * 2 1 4 4 C 1.53002 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46969 * 304.99994 * 4 3 2 6 6 C 1.50699 * 109.47258 * 64.99711 * 4 3 2 7 7 H 1.08003 * 119.99612 * 240.00136 * 6 4 3 8 8 C 1.37871 * 120.00030 * 59.99923 * 6 4 3 9 9 N 1.31512 * 120.00226 * 0.02562 * 8 6 4 10 10 Si 1.86803 * 120.00029 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47310 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47098 * 120.00364 * 10 8 6 13 13 H 1.48501 * 109.46939 * 240.00123 * 10 8 6 14 14 C 1.52998 * 109.47072 * 184.99937 * 4 3 2 15 15 H 1.08998 * 110.35291 * 299.31103 * 14 4 3 16 16 C 1.54593 * 110.30979 * 177.16714 * 14 4 3 17 17 C 1.54933 * 102.92591 * 219.12709 * 16 14 4 18 18 N 1.48538 * 103.22579 * 37.41127 * 17 16 14 19 19 C 1.46897 * 111.00123 * 200.28130 * 18 17 16 20 20 C 1.47899 * 105.82096 * 320.79703 * 18 17 16 21 21 H 1.09000 * 109.47095 * 60.00443 * 1 2 3 22 22 H 1.09004 * 109.47194 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47404 * 300.00001 * 1 2 3 24 24 H 1.08997 * 109.47104 * 59.99972 * 3 2 1 25 25 H 1.08998 * 109.46965 * 299.99594 * 3 2 1 26 26 H 0.96995 * 120.00519 * 179.97438 * 9 8 6 27 27 H 1.09007 * 110.72450 * 337.48700 * 16 14 4 28 28 H 1.09004 * 110.72461 * 100.76623 * 16 14 4 29 29 H 1.09007 * 110.66620 * 278.98326 * 17 16 14 30 30 H 1.08993 * 110.67451 * 155.84848 * 17 16 14 31 31 H 1.09001 * 109.47168 * 177.39602 * 19 18 17 32 32 H 1.09004 * 109.47072 * 297.39935 * 19 18 17 33 33 H 1.09008 * 109.47276 * 57.39760 * 19 18 17 34 34 H 1.09004 * 109.91646 * 265.97786 * 20 18 17 35 35 H 1.08998 * 109.92144 * 144.68177 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5681 0.8410 6 6 3.9883 0.5465 -1.2886 7 1 4.5375 -0.3832 -1.2667 8 6 3.7015 1.1495 -2.4948 9 7 3.0331 2.2819 -2.5214 10 14 4.2634 0.3590 -4.0913 11 1 4.9924 -0.8994 -3.7908 12 1 3.0808 0.0567 -4.9371 13 1 5.1643 1.2915 -4.8151 14 6 4.1574 2.5768 0.1251 15 1 3.8602 3.2022 -0.7167 16 6 5.6980 2.4717 0.1978 17 6 6.0699 3.5505 1.2459 18 7 4.9694 3.4533 2.2387 19 6 4.8716 4.6818 3.0382 20 6 3.7359 3.2326 1.4531 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6886 1.8463 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 2.8316 2.7063 -3.3700 27 1 6.0015 1.4818 0.5388 28 1 6.1465 2.7021 -0.7686 29 1 6.0896 4.5400 0.7890 30 1 7.0287 3.3211 1.7107 31 1 4.0292 4.6021 3.7253 32 1 5.7918 4.8201 3.6059 33 1 4.7213 5.5350 2.3765 34 1 3.2449 4.1859 1.2571 35 1 3.0627 2.5701 1.9971 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261314296.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:18 Heat of formation + Delta-G solvation = -44.296795 kcal Electronic energy + Delta-G solvation = -15211.976824 eV Core-core repulsion = 12824.024383 eV Total energy + Delta-G solvation = -2387.952441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -38.47479 -36.60823 -33.99724 -31.32537 -29.55803 -27.31591 -25.99998 -24.58650 -24.16622 -21.12733 -20.26564 -18.79595 -16.30098 -15.49132 -15.11577 -14.76277 -14.47619 -14.24134 -13.80019 -13.61674 -12.84866 -12.50396 -12.15339 -11.61330 -11.42378 -11.10215 -11.02351 -10.87102 -10.69569 -10.51654 -10.40441 -10.19436 -9.75874 -9.47975 -9.18379 -8.65340 -8.54930 -8.17124 -7.89466 -5.92845 -3.98878 3.32082 3.40563 3.45980 4.48372 4.62376 4.99674 5.31207 5.46230 5.56496 5.70075 5.88350 5.96791 6.00510 6.05645 6.09217 6.13886 6.24052 6.27895 6.50045 6.57383 6.72645 6.80045 7.03646 7.10277 7.22822 7.39342 7.49517 7.58613 7.68220 7.86759 8.10408 8.41617 8.58016 8.97970 9.66070 11.08199 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024825 B = 0.012075 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.643562 B = 2318.310650 C = 3151.096198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.059 3.941 5 H 0.026 0.974 6 C -0.485 4.485 7 H 0.054 0.946 8 C 0.063 3.937 9 N -0.897 5.897 10 Si 0.888 3.112 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.286 1.286 14 C -0.083 4.083 15 H 0.106 0.894 16 C -0.095 4.095 17 C 0.030 3.970 18 N -0.525 5.525 19 C 0.018 3.982 20 C 0.033 3.967 21 H 0.030 0.970 22 H 0.068 0.932 23 H 0.023 0.977 24 H 0.003 0.997 25 H 0.082 0.918 26 H 0.258 0.742 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.029 0.971 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 3.415 5.573 6.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.301 6.301 3 C -0.013 4.013 4 C 0.040 3.960 5 H 0.044 0.956 6 C -0.523 4.523 7 H 0.073 0.927 8 C -0.136 4.136 9 N -0.538 5.538 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.213 1.213 14 C -0.103 4.103 15 H 0.124 0.876 16 C -0.133 4.133 17 C -0.097 4.097 18 N -0.249 5.249 19 C -0.131 4.131 20 C -0.094 4.094 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.021 0.979 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.449 2.955 5.813 6.537 hybrid contribution -0.238 0.689 -1.439 1.613 sum 0.211 3.644 4.374 5.697 Atomic orbital electron populations 1.22510 0.84293 1.00699 0.98601 1.87892 1.16665 1.30425 1.95136 1.22934 0.97124 0.82535 0.98698 1.18686 0.89261 0.91945 0.96151 0.95605 1.21083 1.33749 1.07058 0.90415 0.92745 1.24873 0.95105 0.94882 0.98776 1.69729 1.41028 1.17617 1.25414 0.86588 0.78334 0.79498 0.83909 1.19828 1.21251 1.21286 1.22026 0.93677 0.99701 0.94881 0.87641 1.22277 0.97009 0.97507 0.96554 1.23304 0.94677 0.98447 0.93307 1.64731 1.04793 1.33172 1.22183 1.22464 1.01620 0.91150 0.97888 1.23207 0.91602 0.98848 0.95778 0.95093 0.91331 0.95860 0.97916 0.89975 0.93222 0.91459 0.91914 0.94727 0.91286 0.92003 0.92107 0.96015 0.95258 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.01 101.05 1.11 1.80 16 2 O -0.38 -9.22 10.46 -35.23 -0.37 -9.59 16 3 C 0.06 1.53 5.00 37.16 0.19 1.72 16 4 C 0.06 1.46 1.62 -91.77 -0.15 1.31 16 5 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 6 C -0.48 -13.14 7.89 -34.44 -0.27 -13.41 16 7 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 8 C 0.06 1.69 5.14 -17.82 -0.09 1.59 16 9 N -0.90 -24.21 9.35 55.43 0.52 -23.70 16 10 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 C -0.08 -1.88 2.32 -89.26 -0.21 -2.09 16 15 H 0.11 2.66 6.13 -51.93 -0.32 2.34 16 16 C -0.10 -1.97 6.02 -24.87 -0.15 -2.12 16 17 C 0.03 0.53 6.56 -1.90 -0.01 0.52 16 18 N -0.52 -9.52 5.55 -238.71 -1.33 -10.84 16 19 C 0.02 0.26 9.40 60.06 0.56 0.83 16 20 C 0.03 0.66 5.81 -2.75 -0.02 0.64 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.00 0.06 6.42 -51.93 -0.33 -0.27 16 25 H 0.08 2.17 5.95 -51.93 -0.31 1.86 16 26 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.07 1.43 7.86 -51.92 -0.41 1.02 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.03 0.59 7.96 -51.93 -0.41 0.17 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.31 8.00 -51.92 -0.42 -0.11 16 34 H 0.03 0.56 7.73 -51.93 -0.40 0.16 16 35 H 0.07 1.45 6.40 -51.93 -0.33 1.12 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -27.88 274.69 -6.95 -34.83 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.86 Total: -1.89 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 0.97 Total: -9.20 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: -0.81 Total: -34.54 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.37 Total: -9.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.88 -6.95 -34.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314296.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.465 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds