Wall clock time and date at job start Mon Mar 30 2020 20:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 114.00136 * 2 1 4 4 C 1.52991 * 109.47507 * 175.23568 * 3 2 1 5 5 H 1.09006 * 109.46871 * 304.34604 * 4 3 2 6 6 C 1.50700 * 109.47417 * 64.34174 * 4 3 2 7 7 H 1.07997 * 119.99888 * 55.11629 * 6 4 3 8 8 C 1.37875 * 120.00216 * 235.11688 * 6 4 3 9 9 N 1.31512 * 119.99980 * 178.11690 * 8 6 4 10 10 Si 1.86798 * 120.00075 * 358.11906 * 8 6 4 11 11 H 1.48500 * 109.47123 * 84.75136 * 10 8 6 12 12 H 1.48500 * 109.47525 * 204.75199 * 10 8 6 13 13 H 1.48501 * 109.47174 * 324.75248 * 10 8 6 14 14 C 1.52998 * 109.47334 * 184.34723 * 4 3 2 15 15 H 1.09003 * 110.62750 * 301.64914 * 14 4 3 16 16 C 1.55140 * 110.70775 * 64.94352 * 14 4 3 17 17 C 1.54902 * 101.65279 * 154.03877 * 16 14 4 18 18 N 1.47851 * 104.79871 * 322.93193 * 17 16 14 19 19 C 1.46896 * 111.00213 * 146.36669 * 18 17 16 20 20 C 1.47441 * 108.56322 * 24.09392 * 18 17 16 21 21 H 1.09005 * 109.46731 * 184.77935 * 1 2 3 22 22 H 1.08992 * 109.46981 * 304.78354 * 1 2 3 23 23 H 1.09003 * 109.46893 * 64.78505 * 1 2 3 24 24 H 1.09000 * 109.46707 * 295.23638 * 3 2 1 25 25 H 1.08997 * 109.46595 * 55.23218 * 3 2 1 26 26 H 0.97003 * 120.00038 * 179.97438 * 9 8 6 27 27 H 1.09004 * 110.98989 * 272.12700 * 16 14 4 28 28 H 1.08994 * 110.98902 * 35.94534 * 16 14 4 29 29 H 1.08996 * 110.37345 * 204.09871 * 17 16 14 30 30 H 1.09000 * 110.47290 * 81.80613 * 17 16 14 31 31 H 1.09003 * 109.46910 * 299.15162 * 19 18 17 32 32 H 1.08989 * 109.47419 * 59.15495 * 19 18 17 33 33 H 1.08999 * 109.46748 * 179.15780 * 19 18 17 34 34 H 1.09002 * 109.88604 * 239.60626 * 20 18 17 35 35 H 1.09004 * 109.88876 * 118.42386 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5309 1.1868 0.1198 5 1 3.7812 0.6095 1.0099 6 6 4.0782 0.4915 -1.1001 7 1 3.8596 0.8771 -2.0849 8 6 4.8580 -0.6367 -0.9589 9 7 5.3049 -1.2647 -2.0244 10 14 5.2797 -1.2733 0.7459 11 1 4.1783 -2.1399 1.2371 12 1 6.5379 -2.0595 0.6836 13 1 5.4580 -0.1265 1.6724 14 6 4.1445 2.5841 0.2289 15 1 3.8811 3.1880 -0.6395 16 6 3.6964 3.2791 1.5415 17 6 4.8658 4.2644 1.7888 18 7 6.0754 3.5300 1.3605 19 6 7.0684 4.4440 0.7804 20 6 5.6770 2.4961 0.3877 21 1 -0.3633 -1.0242 0.0856 22 1 -0.3633 0.5862 0.8440 23 1 -0.3633 0.4378 -0.9298 24 1 1.7578 1.8156 -0.9296 25 1 1.6227 1.8757 0.8442 26 1 5.8538 -2.0583 -1.9251 27 1 2.7579 3.8149 1.3988 28 1 3.6135 2.5593 2.3557 29 1 4.9307 4.5184 2.8467 30 1 4.7376 5.1662 1.1900 31 1 6.6433 4.9337 -0.0958 32 1 7.3447 5.1964 1.5189 33 1 7.9539 3.8799 0.4875 34 1 5.9553 1.5101 0.7598 35 1 6.1606 2.6831 -0.5711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261314300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:26 Heat of formation + Delta-G solvation = -45.888703 kcal Electronic energy + Delta-G solvation = -15141.336720 eV Core-core repulsion = 12753.315249 eV Total energy + Delta-G solvation = -2388.021471 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.73001 -36.96243 -33.91657 -31.84745 -29.82238 -27.83568 -25.97786 -25.13128 -24.15160 -21.19688 -20.35657 -19.03171 -17.10800 -15.71125 -15.42171 -14.86372 -14.77043 -14.34810 -13.81531 -13.58491 -12.99558 -12.60883 -12.37520 -12.04647 -11.99930 -11.34426 -11.23521 -11.10327 -10.93213 -10.63622 -10.56531 -10.32829 -10.01432 -9.57653 -9.21573 -9.08840 -8.68019 -8.42610 -7.84199 -5.97702 -3.96146 3.42221 3.47420 3.50130 4.48009 4.53474 4.64775 5.21146 5.23455 5.43855 5.50177 5.70508 5.73321 5.77277 5.80150 5.88708 6.00074 6.06577 6.09803 6.12362 6.21143 6.23024 6.36867 6.45326 6.69750 6.78367 6.82592 7.07862 7.29406 7.45583 7.55510 7.79019 8.11729 8.57609 9.04853 9.66438 11.15958 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.013458 C = 0.009765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.382391 B = 2080.014149 C = 2866.664411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.077 3.923 4 C 0.020 3.980 5 H 0.046 0.954 6 C -0.497 4.497 7 H 0.070 0.930 8 C 0.078 3.922 9 N -0.903 5.903 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.293 1.293 13 H -0.257 1.257 14 C -0.088 4.088 15 H 0.064 0.936 16 C -0.134 4.134 17 C 0.043 3.957 18 N -0.543 5.543 19 C 0.023 3.977 20 C 0.056 3.944 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.020 0.980 26 H 0.262 0.738 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.023 0.977 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 8.998 6.642 11.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.000 4.000 4 C 0.001 3.999 5 H 0.065 0.935 6 C -0.535 4.535 7 H 0.088 0.912 8 C -0.123 4.123 9 N -0.541 5.541 10 Si 0.699 3.301 11 H -0.201 1.201 12 H -0.220 1.220 13 H -0.182 1.182 14 C -0.108 4.108 15 H 0.082 0.918 16 C -0.172 4.172 17 C -0.085 4.085 18 N -0.267 5.267 19 C -0.126 4.126 20 C -0.071 4.071 21 H 0.093 0.907 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.919 8.436 6.993 11.340 hybrid contribution -0.342 0.214 0.016 0.403 sum -3.261 8.650 7.009 11.601 Atomic orbital electron populations 1.22629 0.83663 1.01504 0.98803 1.88061 1.17075 1.28708 1.94988 1.22726 0.96792 0.83213 0.97255 1.19190 0.89384 0.92410 0.98935 0.93545 1.20744 1.30425 1.10124 0.92161 0.91223 1.24994 0.95225 0.95911 0.96172 1.69894 1.35996 1.19522 1.28728 0.87034 0.77703 0.79425 0.85969 1.20084 1.21983 1.18239 1.22399 0.95050 0.98213 0.95123 0.91762 1.22903 0.96803 0.98093 0.99394 1.23000 0.90001 0.95602 0.99924 1.63650 1.11218 1.12990 1.38825 1.22480 0.96422 0.96124 0.97571 1.22836 0.95077 0.95658 0.93490 0.90654 0.95324 0.94964 0.94674 0.96143 0.92826 0.91716 0.91058 0.91243 0.94259 0.95818 0.92248 0.91620 0.89729 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -8.31 10.44 -35.23 -0.37 -8.68 16 3 C 0.08 1.61 5.21 37.15 0.19 1.81 16 4 C 0.02 0.47 1.41 -91.78 -0.13 0.34 16 5 H 0.05 1.14 4.68 -51.93 -0.24 0.89 16 6 C -0.50 -13.79 7.99 -34.44 -0.28 -14.06 16 7 H 0.07 2.12 8.06 -52.49 -0.42 1.69 16 8 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 9 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 10 Si 0.87 22.24 25.73 -169.99 -4.37 17.86 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.24 5.52 56.52 0.31 -5.93 16 14 C -0.09 -1.76 2.48 -88.80 -0.22 -1.98 16 15 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 16 C -0.13 -2.23 5.57 -24.60 -0.14 -2.36 16 17 C 0.04 0.66 6.73 -2.30 -0.02 0.64 16 18 N -0.54 -9.61 5.44 -239.53 -1.30 -10.92 16 19 C 0.02 0.34 9.12 60.06 0.55 0.88 16 20 C 0.06 1.15 5.89 -2.84 -0.02 1.14 16 21 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 22 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.37 7.21 -51.93 -0.37 0.00 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.06 0.94 8.03 -51.93 -0.42 0.52 16 28 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.56 7.78 -51.93 -0.40 0.15 16 31 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.06 0.75 8.14 -51.94 -0.42 0.32 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.96 5.03 -51.93 -0.26 1.70 16 35 H 0.05 1.15 7.58 -51.93 -0.39 0.76 16 LS Contribution 274.10 15.07 4.13 4.13 Total: -1.00 -31.00 274.10 -6.14 -37.14 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.96 Total: -2.64 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 0.96 Total: -9.79 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.53 Total: -38.02 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.37 Total: -8.68 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.37 Total: 17.86 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.00 -6.14 -37.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.753 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds