Wall clock time and date at job start Mon Mar 30 2020 20:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 H 1.08990 * 109.47170 * 54.99820 * 4 3 2 6 6 C 1.50698 * 109.46984 * 294.99644 * 4 3 2 7 7 H 1.08002 * 120.00009 * 120.00386 * 6 4 3 8 8 C 1.37881 * 120.00388 * 300.00043 * 6 4 3 9 9 N 1.31516 * 119.99752 * 0.02562 * 8 6 4 10 10 Si 1.86791 * 120.00300 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47417 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47109 * 120.00134 * 10 8 6 13 13 H 1.48504 * 109.47572 * 240.00315 * 10 8 6 14 14 C 1.53002 * 109.46776 * 174.99924 * 4 3 2 15 15 H 1.09004 * 110.27255 * 60.70294 * 14 4 3 16 16 C 1.54596 * 110.31088 * 298.60745 * 14 4 3 17 17 C 1.55096 * 102.84707 * 219.18847 * 16 14 4 18 18 N 1.48530 * 103.28474 * 37.30374 * 17 16 14 19 19 C 1.46904 * 111.00191 * 200.33218 * 18 17 16 20 20 C 1.47898 * 105.82314 * 320.84965 * 18 17 16 21 21 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 22 22 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 23 23 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 25 25 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 26 26 H 0.97001 * 120.00213 * 179.97438 * 9 8 6 27 27 H 1.08996 * 110.71929 * 337.48857 * 16 14 4 28 28 H 1.09003 * 110.71833 * 100.76736 * 16 14 4 29 29 H 1.09004 * 110.59309 * 278.87675 * 17 16 14 30 30 H 1.08996 * 110.68644 * 155.78339 * 17 16 14 31 31 H 1.08997 * 109.47288 * 177.39576 * 19 18 17 32 32 H 1.08995 * 109.47026 * 297.40111 * 19 18 17 33 33 H 1.08999 * 109.47019 * 57.39909 * 19 18 17 34 34 H 1.08998 * 109.91646 * 265.97644 * 20 18 17 35 35 H 1.09003 * 109.92086 * 144.68445 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5686 -0.8426 6 6 3.9892 0.5463 1.2868 7 1 4.5385 -0.3833 1.2643 8 6 3.7033 1.1490 2.4935 9 7 3.0341 2.2808 2.5210 10 14 4.2653 0.3573 4.0893 11 1 4.9931 -0.9015 3.7879 12 1 5.1672 1.2889 4.8133 13 1 3.0828 0.0554 4.9355 14 6 4.1571 2.5770 -0.1264 15 1 3.8599 3.2009 0.7166 16 6 3.7316 3.2364 -1.4584 17 6 5.0271 3.9560 -1.9162 18 7 6.1018 3.0133 -1.5131 19 6 7.3968 3.7005 -1.4188 20 6 5.6918 2.4724 -0.1990 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8465 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 2.8327 2.7047 3.3699 27 1 3.4332 2.4806 -2.1848 28 1 2.9275 3.9538 -1.2940 29 1 5.1386 4.9098 -1.4004 30 1 5.0265 4.0995 -2.9967 31 1 8.1569 2.9979 -1.0774 32 1 7.6744 4.0885 -2.3987 33 1 7.3197 4.5251 -0.7101 34 1 6.1423 3.0597 0.6011 35 1 5.9973 1.4295 -0.1150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261314302.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:30 Heat of formation + Delta-G solvation = -45.452958 kcal Electronic energy + Delta-G solvation = -15212.623495 eV Core-core repulsion = 12824.620919 eV Total energy + Delta-G solvation = -2388.002576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.43257 -36.61084 -33.96870 -31.47959 -29.27035 -27.50790 -25.71245 -25.04480 -23.87173 -21.08496 -20.29842 -18.86235 -16.08485 -15.52841 -15.08080 -14.81419 -14.62070 -14.24679 -13.66055 -13.57011 -12.84120 -12.56210 -12.04234 -11.57701 -11.41006 -11.12688 -10.99876 -10.86371 -10.63031 -10.59603 -10.45633 -10.22657 -9.82744 -9.48529 -9.19018 -8.64526 -8.54271 -8.17561 -7.81081 -5.93733 -4.00116 3.31548 3.40030 3.45468 4.47730 4.68984 5.00187 5.30772 5.47596 5.53986 5.71816 5.88571 5.96432 5.99259 6.08802 6.14953 6.20657 6.24898 6.28997 6.57176 6.59312 6.68895 6.69887 7.00318 7.05647 7.31065 7.37135 7.47942 7.65476 7.72041 7.87326 8.09636 8.41765 8.57936 8.97193 9.65135 11.07131 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.012749 C = 0.009041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.717718 B = 2195.656193 C = 3096.158310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.383 6.383 3 C 0.065 3.935 4 C 0.058 3.942 5 H 0.026 0.974 6 C -0.487 4.487 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.896 5.896 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.286 1.286 14 C -0.083 4.083 15 H 0.105 0.895 16 C -0.125 4.125 17 C 0.035 3.965 18 N -0.529 5.529 19 C 0.019 3.981 20 C 0.057 3.943 21 H 0.030 0.970 22 H 0.023 0.977 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.003 0.997 26 H 0.258 0.742 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.030 0.970 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 3.187 -5.229 6.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.302 6.302 3 C -0.011 4.011 4 C 0.039 3.961 5 H 0.044 0.956 6 C -0.526 4.526 7 H 0.073 0.927 8 C -0.136 4.136 9 N -0.537 5.537 10 Si 0.716 3.284 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.212 1.212 14 C -0.102 4.102 15 H 0.123 0.877 16 C -0.163 4.163 17 C -0.093 4.093 18 N -0.253 5.253 19 C -0.130 4.130 20 C -0.070 4.070 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.946 2.724 -5.464 6.178 hybrid contribution -0.034 0.615 1.583 1.699 sum 0.912 3.339 -3.881 5.200 Atomic orbital electron populations 1.22509 0.84288 1.00688 0.98602 1.87891 1.16669 1.30481 1.95145 1.22879 0.97007 0.82467 0.98742 1.18697 0.89366 0.91944 0.96086 0.95596 1.21115 1.33813 1.07137 0.90490 0.92716 1.24879 0.95086 0.94874 0.98789 1.69734 1.40901 1.17638 1.25409 0.86593 0.78352 0.79522 0.83898 1.19794 1.21302 1.21206 1.21998 0.92420 0.99847 0.95959 0.87677 1.22704 0.95440 0.98935 0.99220 1.23214 0.92524 0.94079 0.99453 1.64795 1.01500 1.30579 1.28409 1.22444 0.93052 0.97351 1.00184 1.22817 0.96877 1.00383 0.86903 0.95107 0.95846 0.91344 0.90004 0.97899 0.93208 0.91784 0.92363 0.94688 0.91447 0.91819 0.92301 0.96052 0.95188 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.01 101.05 1.11 1.80 16 2 O -0.38 -9.23 10.46 -35.23 -0.37 -9.60 16 3 C 0.07 1.58 5.04 37.16 0.19 1.76 16 4 C 0.06 1.44 1.61 -91.77 -0.15 1.30 16 5 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 6 C -0.49 -13.21 7.51 -34.44 -0.26 -13.47 16 7 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.69 5.14 -17.82 -0.09 1.60 16 9 N -0.90 -24.20 9.35 55.43 0.52 -23.68 16 10 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C -0.08 -1.86 2.32 -89.26 -0.21 -2.07 16 15 H 0.11 2.65 6.12 -51.93 -0.32 2.33 16 16 C -0.12 -2.40 5.50 -24.78 -0.14 -2.54 16 17 C 0.04 0.61 6.56 -1.81 -0.01 0.60 16 18 N -0.53 -9.83 5.55 -238.61 -1.33 -11.16 16 19 C 0.02 0.29 9.40 60.07 0.56 0.85 16 20 C 0.06 1.22 5.98 -2.76 -0.02 1.20 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.08 2.16 5.95 -51.93 -0.31 1.85 16 25 H 0.00 0.07 7.01 -51.93 -0.36 -0.30 16 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.03 0.58 7.96 -51.93 -0.41 0.17 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 34 H 0.03 0.64 7.73 -51.93 -0.40 0.24 16 35 H 0.08 1.89 7.19 -51.93 -0.37 1.52 16 LS Contribution 275.19 15.07 4.15 4.15 Total: -1.00 -27.87 275.19 -6.98 -34.85 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.92 Total: -1.86 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 0.99 Total: -8.97 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.81 Total: -34.84 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.37 Total: -9.60 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.87 -6.98 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261314302.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.606 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds