Wall clock time and date at job start Mon Mar 30 2020 20:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00138 * 2 1 4 4 C 1.53000 * 109.47421 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47106 * 56.45846 * 4 3 2 6 6 C 1.50701 * 109.46662 * 296.46182 * 4 3 2 7 7 H 1.08006 * 119.99885 * 298.02150 * 6 4 3 8 8 C 1.37875 * 120.00477 * 118.02885 * 6 4 3 9 9 N 1.31510 * 120.00246 * 187.76654 * 8 6 4 10 10 Si 1.86805 * 119.99559 * 7.75988 * 8 6 4 11 11 H 1.48494 * 109.47436 * 275.11373 * 10 8 6 12 12 H 1.48498 * 109.47033 * 35.11640 * 10 8 6 13 13 H 1.48501 * 109.46911 * 155.11072 * 10 8 6 14 14 C 1.52991 * 109.47220 * 176.46361 * 4 3 2 15 15 C 1.53127 * 109.52089 * 299.86719 * 14 4 3 16 16 C 1.53046 * 109.27407 * 182.50241 * 15 14 4 17 17 N 1.46855 * 109.57372 * 59.08996 * 16 15 14 18 18 C 1.46851 * 111.19465 * 298.28637 * 17 16 15 19 19 C 1.53041 * 109.52402 * 61.74280 * 18 17 16 20 20 H 1.09000 * 109.47228 * 299.99756 * 1 2 3 21 21 H 1.08994 * 109.46915 * 60.00300 * 1 2 3 22 22 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46978 * 59.99582 * 3 2 1 24 24 H 1.09003 * 109.46926 * 299.99745 * 3 2 1 25 25 H 0.96998 * 119.99599 * 179.97438 * 9 8 6 26 26 H 1.09002 * 109.52884 * 59.99291 * 14 4 3 27 27 H 1.08994 * 109.50195 * 302.38327 * 15 14 4 28 28 H 1.09000 * 109.50200 * 62.50446 * 15 14 4 29 29 H 1.08995 * 109.41166 * 299.07423 * 16 15 14 30 30 H 1.09002 * 109.45232 * 179.12112 * 16 15 14 31 31 H 1.00898 * 110.99708 * 62.38033 * 17 16 15 32 32 H 1.08997 * 109.46362 * 301.72566 * 18 17 16 33 33 H 1.08997 * 109.45967 * 181.75925 * 18 17 16 34 34 H 1.09001 * 109.50288 * 180.88108 * 19 18 17 35 35 H 1.08998 * 109.53490 * 60.77737 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8525 0.5901 -0.8574 6 6 3.9867 0.5136 1.2711 7 1 3.7888 0.9776 2.2261 8 6 4.6523 -0.6925 1.2155 9 7 4.9110 -1.3525 2.3232 10 14 5.1866 -1.3893 -0.4334 11 1 4.0602 -2.1423 -1.0410 12 1 5.5829 -0.2781 -1.3352 13 1 6.3416 -2.3013 -0.2345 14 6 4.1575 2.5796 -0.0896 15 6 3.7023 3.2612 -1.3830 16 6 4.3766 4.6304 -1.4968 17 7 5.8354 4.4619 -1.4970 18 6 6.2997 3.8529 -0.2440 19 6 5.6840 2.4599 -0.0935 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6886 1.8463 0.8899 24 1 1.6887 1.8463 -0.8900 25 1 5.3789 -2.2013 2.2840 26 1 3.8410 3.1750 0.7668 27 1 3.9839 2.6457 -2.2373 28 1 2.6198 3.3880 -1.3660 29 1 4.0828 5.2505 -0.6499 30 1 4.0666 5.1117 -2.4244 31 1 6.1370 3.9225 -2.2947 32 1 5.9969 4.4766 0.5970 33 1 7.3864 3.7697 -0.2615 34 1 6.0164 2.0145 0.8442 35 1 5.9976 1.8308 -0.9266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261319875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:32 Heat of formation + Delta-G solvation = -62.715911 kcal Electronic energy + Delta-G solvation = -15221.998649 eV Core-core repulsion = 12833.247495 eV Total energy + Delta-G solvation = -2388.751154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -38.70525 -36.91471 -33.97742 -31.79229 -30.37970 -28.72022 -26.11574 -24.63217 -23.01505 -22.08900 -20.28162 -19.14359 -17.04614 -15.88657 -15.16442 -14.87793 -14.47035 -14.28075 -14.05420 -13.73151 -13.02603 -12.69104 -12.54806 -12.21290 -11.79493 -11.56128 -11.15135 -10.91969 -10.83084 -10.62669 -10.51204 -10.19107 -10.00370 -9.60409 -9.16426 -9.11307 -8.65275 -8.44093 -7.96116 -5.99825 -3.96290 3.36714 3.42380 3.45214 4.51407 4.59932 4.70114 5.22345 5.31104 5.44013 5.59119 5.72933 5.76105 5.82200 5.85232 5.92421 6.00636 6.06598 6.09810 6.25419 6.26287 6.38101 6.45597 6.54824 6.80980 6.85941 6.95003 7.10320 7.31325 7.39609 7.65229 7.79482 8.12853 8.56319 9.03544 9.65608 11.13966 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.013441 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.398295 B = 2082.630735 C = 2842.985252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.074 3.926 4 C 0.016 3.984 5 H 0.040 0.960 6 C -0.495 4.495 7 H 0.069 0.931 8 C 0.080 3.920 9 N -0.902 5.902 10 Si 0.875 3.125 11 H -0.275 1.275 12 H -0.268 1.268 13 H -0.294 1.294 14 C -0.068 4.068 15 C -0.160 4.160 16 C 0.058 3.942 17 N -0.690 5.690 18 C 0.054 3.946 19 C -0.141 4.141 20 H 0.033 0.967 21 H 0.027 0.973 22 H 0.075 0.925 23 H 0.035 0.965 24 H 0.020 0.980 25 H 0.261 0.739 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.335 0.665 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 8.144 -7.425 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.003 4.003 4 C -0.003 4.003 5 H 0.058 0.942 6 C -0.532 4.532 7 H 0.088 0.912 8 C -0.122 4.122 9 N -0.540 5.540 10 Si 0.704 3.296 11 H -0.201 1.201 12 H -0.193 1.193 13 H -0.221 1.221 14 C -0.087 4.087 15 C -0.199 4.199 16 C -0.072 4.072 17 N -0.318 5.318 18 C -0.075 4.075 19 C -0.180 4.180 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.396 8.469 -7.122 11.322 hybrid contribution -0.363 -1.312 -0.897 1.630 sum -2.759 7.157 -8.018 11.096 Atomic orbital electron populations 1.22613 0.83687 1.01551 0.98669 1.88052 1.17089 1.28756 1.94948 1.22823 0.97262 0.83289 0.96902 1.19235 0.89233 0.93098 0.98711 0.94171 1.20712 1.36000 1.04768 0.91762 0.91245 1.24971 0.95374 0.96076 0.95740 1.69914 1.41931 1.15067 1.27095 0.86917 0.78257 0.78982 0.85466 1.20080 1.19303 1.22113 1.21154 0.95112 0.97461 0.95004 1.22502 1.00545 0.97322 0.99575 1.21990 0.87512 0.96256 1.01408 1.60783 1.11759 1.54160 1.05135 1.22086 0.98997 0.94462 0.91987 1.22173 0.95900 0.96288 1.03635 0.94884 0.95495 0.90674 0.94683 0.96203 0.92876 0.92131 0.92663 0.91988 0.91355 0.91749 0.84847 0.91335 0.91500 0.89591 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.37 -8.46 10.42 -35.23 -0.37 -8.83 16 3 C 0.07 1.57 5.07 37.16 0.19 1.76 16 4 C 0.02 0.38 1.60 -91.78 -0.15 0.23 16 5 H 0.04 0.98 4.76 -51.93 -0.25 0.73 16 6 C -0.49 -13.65 7.38 -34.44 -0.25 -13.91 16 7 H 0.07 2.10 8.06 -52.48 -0.42 1.68 16 8 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 9 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 10 Si 0.88 22.27 26.97 -169.99 -4.58 17.69 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.41 5.97 56.52 0.34 -6.07 16 13 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 14 C -0.07 -1.32 1.83 -90.50 -0.17 -1.48 16 15 C -0.16 -2.57 4.95 -26.64 -0.13 -2.70 16 16 C 0.06 0.81 6.55 -3.83 -0.03 0.79 16 17 N -0.69 -10.01 6.87 -113.80 -0.78 -10.79 16 18 C 0.05 0.84 6.55 -3.83 -0.03 0.82 16 19 C -0.14 -2.68 5.07 -26.65 -0.14 -2.82 16 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.37 6.31 -51.93 -0.33 0.04 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.94 6.50 -51.93 -0.34 0.60 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.34 4.59 8.86 -39.29 -0.35 4.24 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.85 7.32 -51.93 -0.38 1.47 16 35 H 0.05 1.04 7.34 -51.93 -0.38 0.66 16 LS Contribution 272.75 15.07 4.11 4.11 Total: -1.00 -30.58 272.75 -6.40 -36.98 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.87 Total: 1.31 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 0.32 Total: -13.44 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.01 Total: -37.82 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.37 Total: -8.83 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.58 Total: 17.69 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.58 -6.40 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.734 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds