Wall clock time and date at job start Mon Mar 30 2020 20:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00138 * 2 1 4 4 C 1.53000 * 109.47421 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47106 * 56.45846 * 4 3 2 6 6 C 1.50701 * 109.46662 * 296.46182 * 4 3 2 7 7 H 1.08006 * 119.99885 * 298.02150 * 6 4 3 8 8 C 1.37875 * 120.00477 * 118.02885 * 6 4 3 9 9 N 1.31510 * 120.00246 * 187.76654 * 8 6 4 10 10 Si 1.86805 * 119.99559 * 7.75988 * 8 6 4 11 11 H 1.48494 * 109.47436 * 275.11373 * 10 8 6 12 12 H 1.48498 * 109.47033 * 35.11640 * 10 8 6 13 13 H 1.48501 * 109.46911 * 155.11072 * 10 8 6 14 14 C 1.52991 * 109.47220 * 176.46361 * 4 3 2 15 15 C 1.53127 * 109.52089 * 299.86719 * 14 4 3 16 16 C 1.53046 * 109.27407 * 182.50241 * 15 14 4 17 17 N 1.46855 * 109.57372 * 59.08996 * 16 15 14 18 18 C 1.46851 * 111.19465 * 298.28637 * 17 16 15 19 19 C 1.53041 * 109.52402 * 61.74280 * 18 17 16 20 20 H 1.09000 * 109.47228 * 299.99756 * 1 2 3 21 21 H 1.08994 * 109.46915 * 60.00300 * 1 2 3 22 22 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46978 * 59.99582 * 3 2 1 24 24 H 1.09003 * 109.46926 * 299.99745 * 3 2 1 25 25 H 0.96998 * 119.99599 * 179.97438 * 9 8 6 26 26 H 1.09002 * 109.52884 * 59.99291 * 14 4 3 27 27 H 1.08994 * 109.50195 * 302.38327 * 15 14 4 28 28 H 1.09000 * 109.50200 * 62.50446 * 15 14 4 29 29 H 1.08995 * 109.41166 * 299.07423 * 16 15 14 30 30 H 1.09002 * 109.45232 * 179.12112 * 16 15 14 31 31 H 1.00898 * 110.99708 * 62.38033 * 17 16 15 32 32 H 1.08997 * 109.46362 * 301.72566 * 18 17 16 33 33 H 1.08997 * 109.45967 * 181.75925 * 18 17 16 34 34 H 1.09001 * 109.50288 * 180.88108 * 19 18 17 35 35 H 1.08998 * 109.53490 * 60.77737 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8525 0.5901 -0.8574 6 6 3.9867 0.5136 1.2711 7 1 3.7888 0.9776 2.2261 8 6 4.6523 -0.6925 1.2155 9 7 4.9110 -1.3525 2.3232 10 14 5.1866 -1.3893 -0.4334 11 1 4.0602 -2.1423 -1.0410 12 1 5.5829 -0.2781 -1.3352 13 1 6.3416 -2.3013 -0.2345 14 6 4.1575 2.5796 -0.0896 15 6 3.7023 3.2612 -1.3830 16 6 4.3766 4.6304 -1.4968 17 7 5.8354 4.4619 -1.4970 18 6 6.2997 3.8529 -0.2440 19 6 5.6840 2.4599 -0.0935 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6886 1.8463 0.8899 24 1 1.6887 1.8463 -0.8900 25 1 5.3789 -2.2013 2.2840 26 1 3.8410 3.1750 0.7668 27 1 3.9839 2.6457 -2.2373 28 1 2.6198 3.3880 -1.3660 29 1 4.0828 5.2505 -0.6499 30 1 4.0666 5.1117 -2.4244 31 1 6.1370 3.9225 -2.2947 32 1 5.9969 4.4766 0.5970 33 1 7.3864 3.7697 -0.2615 34 1 6.0164 2.0145 0.8442 35 1 5.9976 1.8308 -0.9266 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:31 Heat of formation + Delta-G solvation = -85.461162 kcal Electronic energy + Delta-G solvation = -15222.984957 eV Core-core repulsion = 12833.247495 eV Total energy + Delta-G solvation = -2389.737462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14790 -38.47247 -35.69599 -33.78418 -31.69165 -30.28479 -27.73517 -26.38788 -24.46792 -23.42746 -21.79381 -20.80767 -19.12854 -17.40489 -16.60854 -16.49396 -16.23909 -15.77227 -15.47941 -15.10291 -14.81679 -14.30737 -14.15545 -13.82530 -13.19285 -13.05104 -12.74298 -12.73098 -12.30752 -12.11803 -12.06490 -11.86832 -11.61634 -11.48963 -10.93996 -10.78879 -10.63975 -10.31547 -9.20755 -8.24019 -6.21949 1.30939 1.36019 1.41027 2.38206 3.10948 3.15043 3.51167 3.92982 4.06747 4.30199 4.34616 4.38250 4.43167 4.55433 4.56469 4.58877 4.66484 4.75789 4.82064 4.94218 4.99956 5.06826 5.16517 5.20509 5.25975 5.34883 5.52490 5.64663 5.75660 6.15544 6.32786 6.53044 6.55502 6.82682 7.42031 8.93904 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.013441 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.398295 B = 2082.630735 C = 2842.985252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.077 3.923 4 C 0.012 3.988 5 H 0.032 0.968 6 C -0.483 4.483 7 H 0.026 0.974 8 C 0.022 3.978 9 N -0.954 5.954 10 Si 0.932 3.068 11 H -0.279 1.279 12 H -0.243 1.243 13 H -0.294 1.294 14 C -0.066 4.066 15 C -0.152 4.152 16 C 0.062 3.938 17 N -0.686 5.686 18 C 0.064 3.936 19 C -0.138 4.138 20 H 0.039 0.961 21 H 0.056 0.944 22 H 0.087 0.913 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.261 0.739 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.343 0.657 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 9.795 -10.051 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.000 4.000 4 C -0.007 4.007 5 H 0.050 0.950 6 C -0.521 4.521 7 H 0.045 0.955 8 C -0.175 4.175 9 N -0.595 5.595 10 Si 0.758 3.242 11 H -0.205 1.205 12 H -0.167 1.167 13 H -0.221 1.221 14 C -0.085 4.085 15 C -0.191 4.191 16 C -0.068 4.068 17 N -0.314 5.314 18 C -0.065 4.065 19 C -0.178 4.178 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.105 0.895 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.974 10.151 -9.772 14.401 hybrid contribution -0.280 -1.790 -0.003 1.812 sum -3.254 8.361 -9.775 13.268 Atomic orbital electron populations 1.22863 0.80831 1.03035 1.00394 1.87980 1.20419 1.29690 1.95305 1.22738 0.95562 0.83330 0.98323 1.19304 0.91155 0.94712 0.95515 0.95021 1.20937 1.34598 1.04381 0.92203 0.95540 1.25732 0.96014 0.96769 0.98950 1.70061 1.44083 1.15877 1.29470 0.85992 0.77585 0.78816 0.81758 1.20480 1.16663 1.22068 1.21045 0.95044 0.95351 0.97062 1.22425 1.01550 0.98134 0.96971 1.22043 0.86739 0.94990 1.03007 1.60791 1.12246 1.53682 1.04654 1.21971 0.99577 0.92113 0.92877 1.22124 0.96057 0.98302 1.01277 0.94195 0.92576 0.89492 0.95219 0.92557 0.93045 0.92944 0.92571 0.90646 0.91158 0.88942 0.83987 0.91275 0.90212 0.93258 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -18.49 10.42 -148.98 -1.55 -20.04 16 3 C 0.08 3.14 5.07 71.98 0.37 3.51 16 4 C 0.01 0.55 1.60 -11.54 -0.02 0.53 16 5 H 0.03 1.50 4.76 -2.39 -0.01 1.49 16 6 C -0.48 -27.51 7.38 25.60 0.19 -27.32 16 7 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 8 C 0.02 1.28 5.47 84.65 0.46 1.75 16 9 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 10 Si 0.93 46.47 26.97 68.60 1.85 48.32 16 11 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 12 H -0.24 -10.97 5.97 99.48 0.59 -10.38 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 14 C -0.07 -2.47 1.83 -10.71 -0.02 -2.49 16 15 C -0.15 -4.32 4.95 30.65 0.15 -4.17 16 16 C 0.06 1.47 6.55 86.33 0.57 2.04 16 17 N -0.69 -17.44 6.87 -513.96 -3.53 -20.97 16 18 C 0.06 1.88 6.55 86.33 0.57 2.44 16 19 C -0.14 -5.16 5.07 30.65 0.16 -5.00 16 20 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.89 6.31 -2.39 -0.02 1.88 16 25 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.96 6.50 -2.39 -0.02 1.94 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.34 8.08 8.86 -89.70 -0.79 7.28 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 2.17 7.32 -2.39 -0.02 2.15 16 35 H 0.04 1.70 7.34 -2.39 -0.02 1.68 16 Total: -1.00 -68.00 272.75 0.88 -67.11 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.15 Total: 13.14 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.67 Total: -26.66 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -3.23 Total: -81.87 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -1.55 Total: -20.04 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.85 Total: 48.32 kcal Total: -68.00 0.88 -67.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.347 kcal (2) G-P(sol) polarization free energy of solvation -67.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds