Wall clock time and date at job start Mon Mar 30 2020 20:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99813 * 2 1 4 4 C 1.52997 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47431 * 303.55339 * 4 3 2 6 6 C 1.50699 * 109.47162 * 183.54909 * 4 3 2 7 7 H 1.07999 * 119.99941 * 239.99992 * 6 4 3 8 8 C 1.37878 * 120.00197 * 60.00518 * 6 4 3 9 9 N 1.31515 * 119.99566 * 359.97438 * 8 6 4 10 10 Si 1.86791 * 120.00213 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47236 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47312 * 119.99533 * 10 8 6 13 13 H 1.48501 * 109.47073 * 239.99821 * 10 8 6 14 14 C 1.53004 * 109.46779 * 63.54877 * 4 3 2 15 15 H 1.08998 * 109.50253 * 303.48633 * 14 4 3 16 16 C 1.53120 * 109.50231 * 63.56968 * 14 4 3 17 17 C 1.53117 * 109.16021 * 177.59600 * 16 14 4 18 18 C 1.53047 * 109.27528 * 302.34248 * 17 16 14 19 19 N 1.46846 * 109.52543 * 59.18243 * 18 17 16 20 20 C 1.46852 * 111.19349 * 298.25692 * 19 18 17 21 21 H 1.09003 * 109.46704 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47327 * 299.99509 * 1 2 3 23 23 H 1.08997 * 109.47036 * 60.00526 * 1 2 3 24 24 H 1.09008 * 109.47286 * 59.99819 * 3 2 1 25 25 H 1.09003 * 109.47189 * 300.00456 * 3 2 1 26 26 H 0.97003 * 119.99856 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.52236 * 297.49597 * 16 14 4 28 28 H 1.08996 * 109.52564 * 57.62519 * 16 14 4 29 29 H 1.09002 * 109.50584 * 62.28198 * 17 16 14 30 30 H 1.08996 * 109.50484 * 182.36547 * 17 16 14 31 31 H 1.09000 * 109.45890 * 179.19787 * 18 17 16 32 32 H 1.09000 * 109.45973 * 299.17494 * 18 17 16 33 33 H 1.00897 * 111.00193 * 174.16424 * 19 18 17 34 34 H 1.08996 * 109.46263 * 301.72863 * 20 19 18 35 35 H 1.08999 * 109.45727 * 181.75781 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8525 0.5900 0.8573 6 6 4.1480 2.5588 0.0886 7 1 4.7991 2.9111 -0.6978 8 6 3.8775 3.3662 1.1730 9 7 3.0843 2.9373 2.1304 10 14 4.6362 5.0696 1.2817 11 1 5.4835 5.3113 0.0863 12 1 3.5580 6.0890 1.3391 13 1 5.4710 5.1624 2.5064 14 6 3.9936 0.5037 -1.2906 15 1 3.5025 -0.4647 -1.3852 16 6 3.6269 1.3823 -2.4898 17 6 4.1418 0.7228 -3.7721 18 6 5.6548 0.5194 -3.6633 19 7 5.9538 -0.3278 -2.5018 20 6 5.5108 0.3068 -1.2537 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.6885 1.8465 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 2.8936 3.5054 2.8932 27 1 2.5436 1.4896 -2.5451 28 1 4.0849 2.3648 -2.3752 29 1 3.6536 -0.2425 -3.9062 30 1 3.9207 1.3641 -4.6253 31 1 6.0224 0.0370 -4.5690 32 1 6.1434 1.4863 -3.5429 33 1 6.9362 -0.5548 -2.4631 34 1 6.0001 1.2746 -1.1448 35 1 5.7740 -0.3302 -0.4092 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:41 Heat of formation + Delta-G solvation = -63.949889 kcal Electronic energy + Delta-G solvation = -15253.278203 eV Core-core repulsion = 12864.473540 eV Total energy + Delta-G solvation = -2388.804663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.37437 -36.57151 -33.87062 -31.66674 -30.78050 -27.75861 -25.96244 -24.21108 -23.33603 -22.11432 -20.00747 -18.71637 -16.23155 -15.82881 -15.16926 -14.69547 -14.37968 -14.01238 -13.90592 -13.38940 -13.01881 -12.72350 -12.54242 -12.09301 -11.57866 -11.13164 -10.96910 -10.83815 -10.61939 -10.47311 -10.18639 -10.09902 -10.02578 -9.24632 -8.99903 -8.81600 -8.67233 -8.16895 -7.86028 -6.04836 -4.11304 3.24762 3.33730 3.36543 4.37624 4.76493 4.93533 5.33648 5.46859 5.54358 5.70106 5.96637 5.98699 6.03710 6.09104 6.21256 6.23231 6.28294 6.48501 6.58571 6.63604 6.72962 6.83413 7.02201 7.05470 7.22993 7.35910 7.56180 7.65167 7.81572 7.92120 8.00952 8.24933 8.53978 8.93437 9.53274 11.00321 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.013366 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.025334 B = 2094.360633 C = 3035.086704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.403 6.403 3 C 0.062 3.938 4 C 0.058 3.942 5 H 0.033 0.967 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.060 3.940 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.067 4.067 15 H 0.058 0.942 16 C -0.109 4.109 17 C -0.118 4.118 18 C 0.062 3.938 19 N -0.696 5.696 20 C 0.068 3.932 21 H 0.067 0.933 22 H 0.031 0.969 23 H 0.026 0.974 24 H 0.080 0.920 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.024 0.976 33 H 0.330 0.670 34 H 0.039 0.961 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 -2.928 -7.209 7.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.323 6.323 3 C -0.014 4.014 4 C 0.039 3.961 5 H 0.051 0.949 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.142 4.142 9 N -0.527 5.527 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.086 4.086 15 H 0.077 0.923 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.068 4.068 19 N -0.326 5.326 20 C -0.060 4.060 21 H 0.086 0.914 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.147 0.853 34 H 0.058 0.942 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.068 -3.395 -7.103 7.873 hybrid contribution 0.751 1.993 0.275 2.147 sum 0.819 -1.403 -6.828 7.018 Atomic orbital electron populations 1.22494 0.83962 1.00627 0.98883 1.87833 1.17292 1.31790 1.95343 1.23103 0.96499 0.81630 1.00179 1.18665 0.89452 0.95610 0.92330 0.94852 1.21192 1.28093 0.99607 1.05462 0.91945 1.25045 0.95155 0.98285 0.95673 1.69895 1.36307 1.36732 1.09784 0.86581 0.79143 0.84569 0.78013 1.19818 1.21071 1.21007 1.21070 0.93287 0.98040 0.96163 0.92308 1.21613 1.00156 0.99508 0.93335 1.21630 0.95028 1.00594 0.98349 1.21836 0.96889 0.94804 0.93239 1.60373 1.22039 1.46535 1.03641 1.21980 0.97288 0.97083 0.89657 0.91397 0.95046 0.95570 0.90171 0.96111 0.92949 0.92765 0.91477 0.92036 0.92872 0.92147 0.95762 0.85333 0.94228 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.01 101.05 1.11 1.79 16 2 O -0.40 -9.22 10.12 -35.23 -0.36 -9.57 16 3 C 0.06 1.50 4.97 37.16 0.18 1.69 16 4 C 0.06 1.46 1.83 -91.77 -0.17 1.29 16 5 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 6 C -0.51 -13.22 7.08 -34.44 -0.24 -13.46 16 7 H 0.06 1.62 5.67 -52.49 -0.30 1.32 16 8 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 9 N -0.89 -24.92 11.30 55.43 0.63 -24.29 16 10 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C -0.07 -1.44 2.06 -90.53 -0.19 -1.62 16 15 H 0.06 1.33 7.69 -51.93 -0.40 0.93 16 16 C -0.11 -2.15 4.69 -26.61 -0.12 -2.27 16 17 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 18 C 0.06 0.97 6.55 -3.83 -0.03 0.94 16 19 N -0.70 -11.69 6.85 -113.81 -0.78 -12.47 16 20 C 0.07 1.35 5.64 -3.83 -0.02 1.33 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 2.17 5.98 -51.92 -0.31 1.86 16 25 H 0.02 0.50 6.41 -51.93 -0.33 0.16 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.05 1.09 6.58 -51.93 -0.34 0.75 16 28 H 0.07 1.41 6.33 -51.93 -0.33 1.09 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.33 4.74 8.90 -39.29 -0.35 4.39 16 34 H 0.04 0.83 6.81 -51.93 -0.35 0.48 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 270.28 15.07 4.07 4.07 Total: -1.00 -27.96 270.28 -6.84 -34.80 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.65 Total: 2.62 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 0.27 Total: -10.92 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.15 Total: -36.76 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.36 Total: -9.57 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.96 -6.84 -34.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.149 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds