Wall clock time and date at job start Mon Mar 30 2020 20:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99813 * 2 1 4 4 C 1.52997 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47431 * 303.55339 * 4 3 2 6 6 C 1.50699 * 109.47162 * 183.54909 * 4 3 2 7 7 H 1.07999 * 119.99941 * 239.99992 * 6 4 3 8 8 C 1.37878 * 120.00197 * 60.00518 * 6 4 3 9 9 N 1.31515 * 119.99566 * 359.97438 * 8 6 4 10 10 Si 1.86791 * 120.00213 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47236 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47312 * 119.99533 * 10 8 6 13 13 H 1.48501 * 109.47073 * 239.99821 * 10 8 6 14 14 C 1.53004 * 109.46779 * 63.54877 * 4 3 2 15 15 H 1.08998 * 109.50253 * 303.48633 * 14 4 3 16 16 C 1.53120 * 109.50231 * 63.56968 * 14 4 3 17 17 C 1.53117 * 109.16021 * 177.59600 * 16 14 4 18 18 C 1.53047 * 109.27528 * 302.34248 * 17 16 14 19 19 N 1.46846 * 109.52543 * 59.18243 * 18 17 16 20 20 C 1.46852 * 111.19349 * 298.25692 * 19 18 17 21 21 H 1.09003 * 109.46704 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47327 * 299.99509 * 1 2 3 23 23 H 1.08997 * 109.47036 * 60.00526 * 1 2 3 24 24 H 1.09008 * 109.47286 * 59.99819 * 3 2 1 25 25 H 1.09003 * 109.47189 * 300.00456 * 3 2 1 26 26 H 0.97003 * 119.99856 * 180.02562 * 9 8 6 27 27 H 1.09002 * 109.52236 * 297.49597 * 16 14 4 28 28 H 1.08996 * 109.52564 * 57.62519 * 16 14 4 29 29 H 1.09002 * 109.50584 * 62.28198 * 17 16 14 30 30 H 1.08996 * 109.50484 * 182.36547 * 17 16 14 31 31 H 1.09000 * 109.45890 * 179.19787 * 18 17 16 32 32 H 1.09000 * 109.45973 * 299.17494 * 18 17 16 33 33 H 1.00897 * 111.00193 * 174.16424 * 19 18 17 34 34 H 1.08996 * 109.46263 * 301.72863 * 20 19 18 35 35 H 1.08999 * 109.45727 * 181.75781 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8525 0.5900 0.8573 6 6 4.1480 2.5588 0.0886 7 1 4.7991 2.9111 -0.6978 8 6 3.8775 3.3662 1.1730 9 7 3.0843 2.9373 2.1304 10 14 4.6362 5.0696 1.2817 11 1 5.4835 5.3113 0.0863 12 1 3.5580 6.0890 1.3391 13 1 5.4710 5.1624 2.5064 14 6 3.9936 0.5037 -1.2906 15 1 3.5025 -0.4647 -1.3852 16 6 3.6269 1.3823 -2.4898 17 6 4.1418 0.7228 -3.7721 18 6 5.6548 0.5194 -3.6633 19 7 5.9538 -0.3278 -2.5018 20 6 5.5108 0.3068 -1.2537 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.6885 1.8465 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 2.8936 3.5054 2.8932 27 1 2.5436 1.4896 -2.5451 28 1 4.0849 2.3648 -2.3752 29 1 3.6536 -0.2425 -3.9062 30 1 3.9207 1.3641 -4.6253 31 1 6.0224 0.0370 -4.5690 32 1 6.1434 1.4863 -3.5429 33 1 6.9362 -0.5548 -2.4631 34 1 6.0001 1.2746 -1.1448 35 1 5.7740 -0.3302 -0.4092 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325243.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:40 Heat of formation + Delta-G solvation = -83.142750 kcal Electronic energy + Delta-G solvation = -15254.110468 eV Core-core repulsion = 12864.473540 eV Total energy + Delta-G solvation = -2389.636928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.00545 -38.26663 -35.70259 -33.47424 -32.28513 -29.46230 -27.72200 -26.07374 -24.89120 -23.71113 -21.65856 -20.47097 -18.07586 -17.47052 -16.95440 -16.42458 -16.20808 -15.68989 -15.30652 -15.07360 -14.51342 -14.31542 -14.28477 -13.68827 -13.13666 -12.96348 -12.72174 -12.53639 -12.39255 -12.12841 -11.87037 -11.82803 -11.65495 -10.95849 -10.76095 -10.69129 -10.60797 -10.11258 -9.26700 -8.10315 -6.23202 1.39194 1.42198 1.52332 2.41586 3.06279 3.42127 3.43562 4.07358 4.16998 4.22089 4.41854 4.54800 4.60877 4.67237 4.72110 4.75064 4.81427 4.86119 5.00926 5.07737 5.11628 5.15768 5.26810 5.36190 5.48719 5.55621 5.64206 5.86734 5.95529 6.17055 6.32557 6.65233 6.66387 6.87799 7.44419 8.94682 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020782 B = 0.013366 C = 0.009223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.025334 B = 2094.360633 C = 3035.086704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.422 6.422 3 C 0.076 3.924 4 C 0.057 3.943 5 H -0.008 1.008 6 C -0.509 4.509 7 H 0.064 0.936 8 C 0.011 3.989 9 N -0.920 5.920 10 Si 0.952 3.048 11 H -0.265 1.265 12 H -0.282 1.282 13 H -0.283 1.283 14 C -0.060 4.060 15 H 0.046 0.954 16 C -0.104 4.104 17 C -0.113 4.113 18 C 0.060 3.940 19 N -0.694 5.694 20 C 0.077 3.923 21 H 0.099 0.901 22 H 0.030 0.970 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.347 0.653 34 H 0.025 0.975 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -2.811 -9.047 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.342 6.342 3 C 0.000 4.000 4 C 0.038 3.962 5 H 0.010 0.990 6 C -0.547 4.547 7 H 0.082 0.918 8 C -0.188 4.188 9 N -0.560 5.560 10 Si 0.778 3.222 11 H -0.189 1.189 12 H -0.208 1.208 13 H -0.210 1.210 14 C -0.079 4.079 15 H 0.065 0.935 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.069 4.069 19 N -0.326 5.326 20 C -0.052 4.052 21 H 0.118 0.882 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.041 0.959 33 H 0.166 0.834 34 H 0.043 0.957 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.544 -3.290 -8.960 9.560 hybrid contribution 0.545 1.879 0.851 2.134 sum 1.089 -1.411 -8.108 8.302 Atomic orbital electron populations 1.22777 0.81287 1.03006 0.99576 1.87786 1.20238 1.30695 1.95434 1.22739 0.96304 0.82174 0.98761 1.18610 0.90042 0.94947 0.92634 0.98971 1.21393 1.27856 1.00034 1.05400 0.91779 1.25792 0.95656 1.01853 0.95449 1.70038 1.37560 1.38027 1.10328 0.85591 0.78344 0.80211 0.78066 1.18923 1.20777 1.20953 1.20913 0.94444 0.97278 0.95263 0.93531 1.21523 0.99636 0.98606 0.94377 1.21608 0.95625 1.00723 0.97145 1.21947 0.96221 0.94982 0.93770 1.60307 1.23440 1.46231 1.02620 1.21732 0.95892 0.96385 0.91168 0.88224 0.95157 0.94004 0.93109 0.95779 0.93024 0.93588 0.92944 0.91973 0.90293 0.88844 0.95898 0.83434 0.95717 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 11.01 113.37 1.25 2.30 16 2 O -0.42 -19.45 10.12 -148.98 -1.51 -20.96 16 3 C 0.08 3.83 4.97 71.98 0.36 4.18 16 4 C 0.06 2.91 1.83 -11.54 -0.02 2.89 16 5 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 6 C -0.51 -27.05 7.08 25.60 0.18 -26.87 16 7 H 0.06 3.33 5.67 -2.91 -0.02 3.31 16 8 C 0.01 0.59 5.30 84.65 0.45 1.04 16 9 N -0.92 -52.91 11.30 21.45 0.24 -52.67 16 10 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 C -0.06 -2.60 2.06 -10.74 -0.02 -2.62 16 15 H 0.05 2.11 7.69 -2.39 -0.02 2.10 16 16 C -0.10 -4.01 4.69 30.67 0.14 -3.87 16 17 C -0.11 -3.44 6.09 30.65 0.19 -3.25 16 18 C 0.06 1.68 6.55 86.33 0.57 2.25 16 19 N -0.69 -21.88 6.85 -513.97 -3.52 -25.40 16 20 C 0.08 3.04 5.64 86.33 0.49 3.52 16 21 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 22 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 2.85 5.98 -2.38 -0.01 2.83 16 25 H 0.02 1.17 6.41 -2.39 -0.02 1.15 16 26 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 27 H 0.05 1.82 6.58 -2.39 -0.02 1.80 16 28 H 0.05 2.17 6.33 -2.39 -0.02 2.15 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.35 9.10 8.90 -89.70 -0.80 8.30 16 34 H 0.02 1.03 6.81 -2.39 -0.02 1.02 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -60.53 270.28 1.08 -59.45 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.27 Total: 15.13 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.57 Total: -20.43 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -3.28 Total: -78.07 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -1.51 Total: -20.96 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -60.53 1.08 -59.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325243.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.698 kcal (2) G-P(sol) polarization free energy of solvation -60.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds