Wall clock time and date at job start Mon Mar 30 2020 20:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 114.00358 * 2 1 4 4 C 1.53000 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47181 * 303.05894 * 4 3 2 6 6 C 1.50707 * 109.47171 * 183.06236 * 4 3 2 7 7 H 1.07992 * 119.99836 * 240.00218 * 6 4 3 8 8 C 1.37881 * 119.99957 * 59.72461 * 6 4 3 9 9 N 1.31516 * 119.99921 * 0.26997 * 8 6 4 10 10 Si 1.86801 * 120.00043 * 180.27775 * 8 6 4 11 11 H 1.48495 * 109.47144 * 89.99714 * 10 8 6 12 12 H 1.48503 * 109.46831 * 209.99855 * 10 8 6 13 13 H 1.48499 * 109.46986 * 329.99890 * 10 8 6 14 14 C 1.52993 * 109.47228 * 63.06220 * 4 3 2 15 15 H 1.09000 * 109.50450 * 305.04270 * 14 4 3 16 16 C 1.53124 * 109.50626 * 184.92300 * 14 4 3 17 17 C 1.53113 * 109.16280 * 182.40478 * 16 14 4 18 18 C 1.53038 * 109.28006 * 57.65521 * 17 16 14 19 19 N 1.46846 * 109.52145 * 300.82237 * 18 17 16 20 20 C 1.46844 * 111.19987 * 61.74058 * 19 18 17 21 21 H 1.08993 * 109.46815 * 59.99947 * 1 2 3 22 22 H 1.08992 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46845 * 300.00338 * 1 2 3 24 24 H 1.08996 * 109.47326 * 59.99730 * 3 2 1 25 25 H 1.09005 * 109.46917 * 300.00084 * 3 2 1 26 26 H 0.96997 * 120.00249 * 179.97438 * 9 8 6 27 27 H 1.08999 * 109.52362 * 302.31318 * 16 14 4 28 28 H 1.09003 * 109.51868 * 62.49498 * 16 14 4 29 29 H 1.08997 * 109.50353 * 297.71045 * 17 16 14 30 30 H 1.09005 * 109.53395 * 177.61646 * 17 16 14 31 31 H 1.08998 * 109.46150 * 180.79988 * 18 17 16 32 32 H 1.09001 * 109.45774 * 60.83638 * 18 17 16 33 33 H 1.00900 * 110.99744 * 297.64227 * 19 18 17 34 34 H 1.08999 * 109.46149 * 178.24075 * 20 19 18 35 35 H 1.08994 * 109.46165 * 58.27603 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8538 0.5968 0.8604 6 6 4.1484 2.5592 0.0753 7 1 4.7983 2.9050 -0.7149 8 6 3.8749 3.3775 1.1507 9 7 3.0834 2.9564 2.1129 10 14 4.6284 5.0844 1.2410 11 1 3.7223 6.0608 0.5848 12 1 4.8209 5.4659 2.6633 13 1 5.9412 5.0833 0.5468 14 6 3.9918 0.4930 -1.2869 15 1 3.4796 -0.4640 -1.3870 16 6 5.5044 0.2611 -1.2338 17 6 5.9616 -0.3762 -2.5488 18 6 5.5711 0.5351 -3.7146 19 7 4.1151 0.7253 -3.7223 20 6 3.6584 1.3791 -2.4893 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6887 1.8463 0.8899 25 1 1.6887 1.8463 -0.8900 26 1 2.8912 3.5319 2.8697 27 1 6.0144 1.2143 -1.0943 28 1 5.7419 -0.4049 -0.4042 29 1 5.4811 -1.3471 -2.6690 30 1 7.0439 -0.5051 -2.5344 31 1 5.8827 0.0774 -4.6535 32 1 6.0631 1.5011 -3.6009 33 1 3.6366 -0.1514 -3.8653 34 1 2.5807 1.5344 -2.5382 35 1 4.1592 2.3412 -2.3814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:46 Heat of formation + Delta-G solvation = -66.340768 kcal Electronic energy + Delta-G solvation = -15273.995022 eV Core-core repulsion = 12885.086683 eV Total energy + Delta-G solvation = -2388.908339 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -38.57764 -36.64040 -33.86631 -31.51380 -30.81590 -27.72353 -25.99644 -24.23031 -22.91250 -22.59878 -20.11687 -19.01507 -16.30717 -15.51482 -15.24057 -14.69014 -14.39064 -14.10642 -13.95329 -13.84062 -13.14785 -12.36741 -12.26026 -11.73920 -11.50239 -11.24758 -11.05036 -10.73361 -10.65768 -10.57768 -10.44871 -10.33441 -10.03267 -9.78525 -9.00325 -8.82343 -8.68807 -8.28624 -7.64186 -6.05818 -4.12593 3.26833 3.34388 3.37150 4.37764 4.87599 4.89888 5.31879 5.34908 5.55412 5.62823 5.93792 5.95557 5.99812 6.04494 6.11216 6.17940 6.23573 6.36581 6.53695 6.62002 6.66194 6.77951 6.96866 7.03714 7.18896 7.22716 7.53133 7.64683 7.78015 7.92389 7.98621 8.21509 8.50036 8.91899 9.52404 10.99413 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.013346 C = 0.009246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.415700 B = 2097.491582 C = 3027.583117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.405 6.405 3 C 0.059 3.941 4 C 0.063 3.937 5 H 0.032 0.968 6 C -0.507 4.507 7 H 0.064 0.936 8 C 0.060 3.940 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.106 4.106 15 H 0.050 0.950 16 C -0.107 4.107 17 C -0.157 4.157 18 C 0.060 3.940 19 N -0.693 5.693 20 C 0.066 3.934 21 H 0.027 0.973 22 H 0.067 0.933 23 H 0.031 0.969 24 H 0.081 0.919 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.330 0.670 34 H 0.065 0.935 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.298 -4.194 -6.605 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.325 6.325 3 C -0.016 4.016 4 C 0.044 3.956 5 H 0.050 0.950 6 C -0.545 4.545 7 H 0.082 0.918 8 C -0.141 4.141 9 N -0.528 5.528 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.126 4.126 15 H 0.068 0.932 16 C -0.144 4.144 17 C -0.197 4.197 18 C -0.070 4.070 19 N -0.320 5.320 20 C -0.062 4.062 21 H 0.045 0.955 22 H 0.086 0.914 23 H 0.050 0.950 24 H 0.099 0.901 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.372 -3.680 -6.807 7.747 hybrid contribution 0.170 0.452 0.917 1.037 sum 0.542 -3.228 -5.889 6.738 Atomic orbital electron populations 1.22496 0.83877 1.00619 0.98995 1.87815 1.17381 1.31899 1.95370 1.23146 0.96609 0.81577 1.00310 1.18615 0.89263 0.95615 0.92113 0.95021 1.21147 1.28263 0.99190 1.05899 0.91816 1.25046 0.95100 0.98397 0.95574 1.69880 1.36338 1.36654 1.09924 0.86613 0.79748 0.84607 0.77217 1.20659 1.21269 1.19824 1.21706 0.94496 0.98218 0.98161 0.93191 1.21541 0.97133 1.00801 0.94954 1.22301 1.00410 0.99165 0.97785 1.21939 0.89417 0.99203 0.96485 1.60834 1.04795 1.28225 1.38167 1.22136 1.00036 0.98136 0.85917 0.95468 0.91428 0.94992 0.90081 0.96054 0.92877 0.91087 0.93041 0.92935 0.92605 0.92043 0.91296 0.85380 0.91642 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.78 16 2 O -0.41 -9.07 10.07 -35.23 -0.35 -9.43 16 3 C 0.06 1.43 4.98 37.16 0.19 1.61 16 4 C 0.06 1.55 1.82 -91.77 -0.17 1.38 16 5 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.51 -13.16 7.09 -34.44 -0.24 -13.40 16 7 H 0.06 1.63 5.67 -52.49 -0.30 1.33 16 8 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 9 N -0.89 -24.87 11.29 55.43 0.63 -24.25 16 10 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 C -0.11 -2.19 2.04 -90.54 -0.18 -2.38 16 15 H 0.05 1.06 7.63 -51.93 -0.40 0.66 16 16 C -0.11 -2.04 5.13 -26.61 -0.14 -2.18 16 17 C -0.16 -2.45 6.08 -26.65 -0.16 -2.62 16 18 C 0.06 0.91 6.55 -3.83 -0.03 0.88 16 19 N -0.69 -11.61 6.87 -113.82 -0.78 -12.39 16 20 C 0.07 1.30 5.27 -3.84 -0.02 1.28 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 2.17 5.98 -51.93 -0.31 1.86 16 25 H 0.02 0.50 6.45 -51.93 -0.33 0.17 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.07 1.46 6.89 -51.93 -0.36 1.10 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.33 5.12 8.86 -39.29 -0.35 4.78 16 34 H 0.07 1.32 6.55 -51.93 -0.34 0.98 16 35 H 0.08 1.73 6.28 -51.93 -0.33 1.41 16 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -27.34 270.25 -6.85 -34.19 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.65 Total: 4.19 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 0.26 Total: -12.12 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.16 Total: -36.63 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.35 Total: -9.43 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.34 -6.85 -34.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.155 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds