Wall clock time and date at job start Mon Mar 30 2020 20:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99907 * 2 1 4 4 H 1.08998 * 109.47601 * 9.20456 * 3 2 1 5 5 C 1.50705 * 109.47114 * 129.20201 * 3 2 1 6 6 H 1.07997 * 120.00003 * 120.00149 * 5 3 2 7 7 C 1.37873 * 119.99862 * 300.00068 * 5 3 2 8 8 N 1.31522 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00400 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46833 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47258 * 119.99578 * 9 7 5 12 12 H 1.48499 * 109.47375 * 240.00063 * 9 7 5 13 13 C 1.53002 * 109.47194 * 249.20054 * 3 2 1 14 14 C 1.53124 * 109.52189 * 174.51580 * 13 3 2 15 15 C 1.53043 * 109.27361 * 182.50458 * 14 13 3 16 16 N 1.46843 * 109.57518 * 59.08148 * 15 14 13 17 17 C 1.46905 * 110.99978 * 174.19209 * 16 15 14 18 18 C 1.46846 * 111.20181 * 298.28838 * 16 15 14 19 19 C 1.53037 * 109.51806 * 61.74293 * 18 16 15 20 20 H 1.08997 * 109.47381 * 62.68231 * 1 2 3 21 21 H 1.09005 * 109.47092 * 302.68398 * 1 2 3 22 22 H 1.09003 * 109.47227 * 182.68846 * 1 2 3 23 23 H 0.97000 * 119.99825 * 179.97438 * 8 7 5 24 24 H 1.09001 * 109.51951 * 294.64169 * 13 3 2 25 25 H 1.09005 * 109.50032 * 302.38065 * 14 13 3 26 26 H 1.08997 * 109.50448 * 62.50037 * 14 13 3 27 27 H 1.09001 * 109.40690 * 299.06769 * 15 14 13 28 28 H 1.09001 * 109.46376 * 179.13304 * 15 14 13 29 29 H 1.09002 * 109.47247 * 184.21157 * 17 16 15 30 30 H 1.09005 * 109.47135 * 304.21083 * 17 16 15 31 31 H 1.08998 * 109.46905 * 64.21066 * 17 16 15 32 32 H 1.08992 * 109.45941 * 301.72748 * 18 16 15 33 33 H 1.08999 * 109.46081 * 181.75769 * 18 16 15 34 34 H 1.09003 * 109.49847 * 180.87935 * 19 18 16 35 35 H 1.09004 * 109.53975 * 60.78346 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2313 2.0500 0.1644 5 6 3.0350 1.3991 1.1011 6 1 4.0648 1.6202 0.8628 7 6 2.6576 1.2024 2.4125 8 7 1.4033 0.9336 2.7026 9 14 3.9278 1.3178 3.7773 10 1 5.2565 1.6295 3.1918 11 1 3.5402 2.3937 4.7246 12 1 3.9965 0.0226 4.5004 13 6 2.6856 1.5630 -1.3485 14 6 3.1892 3.0081 -1.4008 15 6 3.8077 3.2782 -2.7744 16 7 2.8017 3.0519 -3.8200 17 6 3.3198 3.4340 -5.1404 18 6 2.3393 1.6582 -3.8193 19 6 1.6756 1.3403 -2.4775 20 1 -0.3634 0.4716 -0.9130 21 1 -0.3633 0.5550 0.8650 22 1 -0.3634 -1.0265 0.0482 23 1 1.1379 0.7949 3.6252 24 1 3.5259 0.8797 -1.4714 25 1 2.3548 3.6903 -1.2379 26 1 3.9407 3.1598 -0.6261 27 1 4.6512 2.6056 -2.9303 28 1 4.1534 4.3109 -2.8204 29 1 2.5310 3.3271 -5.8851 30 1 3.6555 4.4707 -5.1130 31 1 4.1574 2.7878 -5.4030 32 1 3.1897 0.9934 -3.9704 33 1 1.6185 1.5143 -4.6242 34 1 1.3464 0.3012 -2.4715 35 1 0.8164 1.9950 -2.3316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325988.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:52 Heat of formation + Delta-G solvation = -55.438997 kcal Electronic energy + Delta-G solvation = -15174.720519 eV Core-core repulsion = 12786.284916 eV Total energy + Delta-G solvation = -2388.435603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.71165 -36.31330 -33.08220 -32.23955 -30.32545 -28.15088 -25.67996 -24.80657 -22.86580 -22.48923 -20.45382 -18.93906 -16.52662 -15.53881 -14.85627 -14.68737 -14.52076 -14.26060 -13.64287 -13.39222 -12.92298 -12.77583 -12.24579 -12.01115 -11.82854 -11.34348 -11.26466 -10.94804 -10.78955 -10.59288 -10.30399 -10.09085 -9.99989 -9.52756 -9.45000 -9.08745 -8.41576 -8.07828 -7.65529 -6.00294 -4.07956 3.31061 3.39144 3.42678 4.24009 4.44305 5.13425 5.26762 5.35685 5.45926 5.53467 5.67376 5.78355 5.86118 5.90656 5.94339 6.10502 6.19377 6.28885 6.43592 6.51018 6.60959 6.66925 6.80928 6.97791 7.00909 7.06325 7.21887 7.36693 7.42818 7.51764 7.94295 8.36119 8.90768 9.15877 9.61217 11.08472 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038109 B = 0.009266 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.560872 B = 3021.168101 C = 3608.897963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.383 6.383 3 C 0.223 3.777 4 H 0.017 0.983 5 C -0.525 4.525 6 H 0.061 0.939 7 C 0.074 3.926 8 N -0.873 5.873 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.094 4.094 14 C -0.100 4.100 15 C 0.056 3.944 16 N -0.544 5.544 17 C 0.026 3.974 18 C 0.059 3.941 19 C -0.110 4.110 20 H 0.006 0.994 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.259 0.741 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.019 0.981 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 3.058 -10.430 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.302 6.302 3 C 0.167 3.833 4 H 0.035 0.965 5 C -0.562 4.562 6 H 0.079 0.921 7 C -0.130 4.130 8 N -0.511 5.511 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.113 4.113 14 C -0.138 4.138 15 C -0.071 4.071 16 N -0.269 5.269 17 C -0.123 4.123 18 C -0.069 4.069 19 C -0.147 4.147 20 H 0.025 0.975 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.973 3.156 -10.189 10.711 hybrid contribution 1.123 -0.327 0.590 1.310 sum 2.096 2.829 -9.598 10.224 Atomic orbital electron populations 1.22419 0.85015 0.99443 0.98179 1.87923 1.16406 1.31353 1.94485 1.19672 0.92304 0.81960 0.89367 0.96475 1.21370 0.95337 1.48662 0.90853 0.92108 1.25023 0.95114 0.94045 0.98794 1.69954 1.15919 1.46610 1.18646 0.86567 0.81901 0.77572 0.82045 1.19724 1.21064 1.20995 1.21586 0.97794 0.95435 0.96508 1.21503 1.00948 0.97214 0.94093 1.22178 0.92466 0.99873 0.92610 1.61952 1.38329 1.22670 1.03956 1.22329 0.98434 1.00317 0.91171 1.22117 0.98361 0.87487 0.98938 1.21641 0.98858 1.01069 0.93176 0.97539 0.93305 0.93277 0.93126 0.92393 0.91866 0.90639 0.95454 0.91540 0.91837 0.91778 0.96211 0.95411 0.91731 0.91462 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.07 10.21 101.05 1.03 2.10 16 2 O -0.38 -10.05 9.02 -35.23 -0.32 -10.37 16 3 C 0.22 5.68 1.69 -27.88 -0.05 5.64 16 4 H 0.02 0.48 7.61 -51.93 -0.40 0.08 16 5 C -0.52 -14.55 8.13 -34.44 -0.28 -14.83 16 6 H 0.06 1.65 7.09 -52.49 -0.37 1.28 16 7 C 0.07 2.09 5.40 -17.82 -0.10 1.99 16 8 N -0.87 -25.29 11.98 55.43 0.66 -24.63 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.09 -2.00 1.98 -90.50 -0.18 -2.18 16 14 C -0.10 -1.90 5.16 -26.65 -0.14 -2.04 16 15 C 0.06 0.91 5.46 -3.83 -0.02 0.88 16 16 N -0.54 -8.47 4.91 -242.96 -1.19 -9.66 16 17 C 0.03 0.32 9.59 60.07 0.58 0.89 16 18 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 19 C -0.11 -2.04 4.33 -26.65 -0.12 -2.15 16 20 H 0.01 0.13 7.27 -51.93 -0.38 -0.25 16 21 H 0.05 1.20 7.43 -51.93 -0.39 0.81 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.08 1.50 7.07 -51.93 -0.37 1.13 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 34 H 0.07 1.27 7.32 -51.93 -0.38 0.89 16 35 H 0.06 1.16 8.13 -51.93 -0.42 0.73 16 LS Contribution 275.70 15.07 4.15 4.15 Total: -1.00 -29.47 275.70 -7.06 -36.53 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.06 Total: -3.66 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 0.71 Total: -8.79 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.53 Total: -34.29 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.32 Total: -10.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.47 -7.06 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325988.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.907 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds