Wall clock time and date at job start Mon Mar 30 2020 20:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99907 * 2 1 4 4 H 1.08998 * 109.47601 * 9.20456 * 3 2 1 5 5 C 1.50705 * 109.47114 * 129.20201 * 3 2 1 6 6 H 1.07997 * 120.00003 * 120.00149 * 5 3 2 7 7 C 1.37873 * 119.99862 * 300.00068 * 5 3 2 8 8 N 1.31522 * 119.99844 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00400 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46833 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47258 * 119.99578 * 9 7 5 12 12 H 1.48499 * 109.47375 * 240.00063 * 9 7 5 13 13 C 1.53002 * 109.47194 * 249.20054 * 3 2 1 14 14 C 1.53124 * 109.52189 * 174.51580 * 13 3 2 15 15 C 1.53043 * 109.27361 * 182.50458 * 14 13 3 16 16 N 1.46843 * 109.57518 * 59.08148 * 15 14 13 17 17 C 1.46905 * 110.99978 * 174.19209 * 16 15 14 18 18 C 1.46846 * 111.20181 * 298.28838 * 16 15 14 19 19 C 1.53037 * 109.51806 * 61.74293 * 18 16 15 20 20 H 1.08997 * 109.47381 * 62.68231 * 1 2 3 21 21 H 1.09005 * 109.47092 * 302.68398 * 1 2 3 22 22 H 1.09003 * 109.47227 * 182.68846 * 1 2 3 23 23 H 0.97000 * 119.99825 * 179.97438 * 8 7 5 24 24 H 1.09001 * 109.51951 * 294.64169 * 13 3 2 25 25 H 1.09005 * 109.50032 * 302.38065 * 14 13 3 26 26 H 1.08997 * 109.50448 * 62.50037 * 14 13 3 27 27 H 1.09001 * 109.40690 * 299.06769 * 15 14 13 28 28 H 1.09001 * 109.46376 * 179.13304 * 15 14 13 29 29 H 1.09002 * 109.47247 * 184.21157 * 17 16 15 30 30 H 1.09005 * 109.47135 * 304.21083 * 17 16 15 31 31 H 1.08998 * 109.46905 * 64.21066 * 17 16 15 32 32 H 1.08992 * 109.45941 * 301.72748 * 18 16 15 33 33 H 1.08999 * 109.46081 * 181.75769 * 18 16 15 34 34 H 1.09003 * 109.49847 * 180.87935 * 19 18 16 35 35 H 1.09004 * 109.53975 * 60.78346 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2313 2.0500 0.1644 5 6 3.0350 1.3991 1.1011 6 1 4.0648 1.6202 0.8628 7 6 2.6576 1.2024 2.4125 8 7 1.4033 0.9336 2.7026 9 14 3.9278 1.3178 3.7773 10 1 5.2565 1.6295 3.1918 11 1 3.5402 2.3937 4.7246 12 1 3.9965 0.0226 4.5004 13 6 2.6856 1.5630 -1.3485 14 6 3.1892 3.0081 -1.4008 15 6 3.8077 3.2782 -2.7744 16 7 2.8017 3.0519 -3.8200 17 6 3.3198 3.4340 -5.1404 18 6 2.3393 1.6582 -3.8193 19 6 1.6756 1.3403 -2.4775 20 1 -0.3634 0.4716 -0.9130 21 1 -0.3633 0.5550 0.8650 22 1 -0.3634 -1.0265 0.0482 23 1 1.1379 0.7949 3.6252 24 1 3.5259 0.8797 -1.4714 25 1 2.3548 3.6903 -1.2379 26 1 3.9407 3.1598 -0.6261 27 1 4.6512 2.6056 -2.9303 28 1 4.1534 4.3109 -2.8204 29 1 2.5310 3.3271 -5.8851 30 1 3.6555 4.4707 -5.1130 31 1 4.1574 2.7878 -5.4030 32 1 3.1897 0.9934 -3.9704 33 1 1.6185 1.5143 -4.6242 34 1 1.3464 0.3012 -2.4715 35 1 0.8164 1.9950 -2.3316 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325988.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:48 Heat of formation + Delta-G solvation = -75.136018 kcal Electronic energy + Delta-G solvation = -15175.574646 eV Core-core repulsion = 12786.284916 eV Total energy + Delta-G solvation = -2389.289730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -40.18138 -38.09807 -34.77904 -34.20220 -31.72540 -29.86967 -27.15096 -26.77989 -24.42733 -23.91629 -22.10415 -20.50626 -18.62177 -17.04729 -16.71923 -16.40765 -15.94654 -15.54006 -15.41905 -15.19749 -14.54744 -14.22979 -13.74479 -13.57000 -13.21544 -12.93133 -12.84459 -12.70879 -12.39666 -12.16109 -12.03784 -11.86758 -11.78751 -11.26083 -11.19559 -10.93971 -10.55470 -9.64440 -9.22176 -8.13045 -6.28383 1.39966 1.41880 1.53326 2.42150 3.06359 3.08059 3.77619 4.02142 4.04422 4.18415 4.31759 4.50504 4.60306 4.60812 4.67041 4.71557 4.79360 4.85749 4.90658 4.93868 5.04203 5.09415 5.12441 5.14721 5.28159 5.39933 5.48266 5.64152 5.81739 6.16427 6.23156 6.29190 6.77360 7.17095 7.44404 8.94891 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.038109 B = 0.009266 C = 0.007757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.560872 B = 3021.168101 C = 3608.897963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.406 6.406 3 C 0.224 3.776 4 H -0.011 1.011 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.903 5.903 9 Si 0.958 3.042 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.283 1.283 13 C -0.088 4.088 14 C -0.095 4.095 15 C 0.064 3.936 16 N -0.558 5.558 17 C 0.026 3.974 18 C 0.065 3.935 19 C -0.102 4.102 20 H 0.030 0.970 21 H 0.023 0.977 22 H 0.070 0.930 23 H 0.260 0.740 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 3.487 -11.794 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.326 6.326 3 C 0.168 3.832 4 H 0.006 0.994 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.541 5.541 9 Si 0.783 3.217 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.209 1.209 13 C -0.107 4.107 14 C -0.133 4.133 15 C -0.063 4.063 16 N -0.283 5.283 17 C -0.121 4.121 18 C -0.063 4.063 19 C -0.140 4.140 20 H 0.048 0.952 21 H 0.042 0.958 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.774 3.593 -11.571 12.246 hybrid contribution 0.820 -0.466 1.005 1.378 sum 2.594 3.128 -10.566 11.321 Atomic orbital electron populations 1.22452 0.83362 1.00648 0.98200 1.87842 1.18297 1.31673 1.94752 1.19617 0.91256 0.80939 0.91381 0.99364 1.21738 0.95782 1.48738 0.92050 0.92231 1.25849 0.97079 0.93773 1.01222 1.70080 1.17537 1.47401 1.19120 0.85532 0.79647 0.77552 0.78988 1.18910 1.20292 1.20895 1.21442 0.97601 0.96448 0.95251 1.21406 1.00244 0.95481 0.96179 1.22062 0.92263 1.01169 0.90843 1.61930 1.38591 1.22276 1.05484 1.22408 0.99155 1.01156 0.89418 1.22039 0.98752 0.87942 0.97548 1.21525 0.97973 1.00545 0.93977 0.95169 0.95829 0.91170 0.93081 0.93764 0.92939 0.92051 0.95295 0.89431 0.90350 0.90454 0.95551 0.95292 0.89369 0.92053 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.31 10.21 113.37 1.16 3.46 16 2 O -0.41 -21.69 9.02 -148.98 -1.34 -23.03 16 3 C 0.22 11.72 1.69 29.85 0.05 11.77 16 4 H -0.01 -0.65 7.61 -2.39 -0.02 -0.67 16 5 C -0.55 -30.87 8.13 25.60 0.21 -30.67 16 6 H 0.06 3.29 7.09 -2.91 -0.02 3.27 16 7 C 0.02 1.25 5.40 84.65 0.46 1.70 16 8 N -0.90 -53.33 11.98 21.45 0.26 -53.07 16 9 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 C -0.09 -3.78 1.98 -10.71 -0.02 -3.80 16 14 C -0.10 -3.63 5.16 30.65 0.16 -3.47 16 15 C 0.06 1.94 5.46 86.33 0.47 2.41 16 16 N -0.56 -15.85 4.91 -922.57 -4.53 -20.38 16 17 C 0.03 0.55 9.59 127.69 1.22 1.77 16 18 C 0.06 1.90 5.46 86.33 0.47 2.37 16 19 C -0.10 -3.72 4.33 30.64 0.13 -3.59 16 20 H 0.03 1.21 7.27 -2.39 -0.02 1.20 16 21 H 0.02 1.18 7.43 -2.38 -0.02 1.16 16 22 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.06 2.46 7.07 -2.39 -0.02 2.45 16 27 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.42 8.09 -2.38 -0.02 1.40 16 31 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 2.19 8.12 -2.39 -0.02 2.17 16 34 H 0.06 2.27 7.32 -2.39 -0.02 2.26 16 35 H 0.05 1.98 8.13 -2.38 -0.02 1.97 16 Total: -1.00 -63.33 275.70 1.75 -61.58 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.03 Total: 6.52 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.31 Total: -18.03 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -4.27 Total: -73.45 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -1.34 Total: -23.03 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.33 1.75 -61.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325988.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.557 kcal (2) G-P(sol) polarization free energy of solvation -63.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds