Wall clock time and date at job start Mon Mar 30 2020 20:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00105 * 2 1 4 4 H 1.08999 * 109.47239 * 31.99401 * 3 2 1 5 5 C 1.50698 * 109.47115 * 271.99375 * 3 2 1 6 6 H 1.08007 * 119.99781 * 294.88175 * 5 3 2 7 7 C 1.37877 * 120.00424 * 114.87999 * 5 3 2 8 8 N 1.31515 * 119.99862 * 5.83816 * 7 5 3 9 9 Si 1.86802 * 120.00451 * 185.83721 * 7 5 3 10 10 H 1.48502 * 109.46859 * 89.99502 * 9 7 5 11 11 H 1.48494 * 109.47018 * 209.99831 * 9 7 5 12 12 H 1.48503 * 109.46687 * 330.00065 * 9 7 5 13 13 C 1.53001 * 109.47308 * 151.99358 * 3 2 1 14 14 C 1.53122 * 109.52120 * 299.99653 * 13 3 2 15 15 C 1.53044 * 109.27848 * 182.43555 * 14 13 3 16 16 N 1.46852 * 109.51892 * 59.18091 * 15 14 13 17 17 C 1.46894 * 110.99670 * 174.15803 * 16 15 14 18 18 C 1.46842 * 111.19947 * 298.25754 * 16 15 14 19 19 C 1.53048 * 109.52502 * 61.74367 * 18 16 15 20 20 H 1.08999 * 109.47225 * 295.53621 * 1 2 3 21 21 H 1.08998 * 109.47192 * 55.53785 * 1 2 3 22 22 H 1.09000 * 109.47701 * 175.53931 * 1 2 3 23 23 H 0.96999 * 120.00691 * 180.02562 * 8 7 5 24 24 H 1.08998 * 109.57129 * 60.15592 * 13 3 2 25 25 H 1.09000 * 109.50156 * 62.50131 * 14 13 3 26 26 H 1.08995 * 109.53708 * 302.40064 * 14 13 3 27 27 H 1.08993 * 109.46156 * 299.16733 * 15 14 13 28 28 H 1.08997 * 109.46210 * 179.19459 * 15 14 13 29 29 H 1.08998 * 109.47264 * 60.00475 * 17 16 15 30 30 H 1.09004 * 109.46663 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.47631 * 300.00216 * 17 16 15 32 32 H 1.08998 * 109.46063 * 181.75796 * 18 16 15 33 33 H 1.08999 * 109.46717 * 301.72760 * 18 16 15 34 34 H 1.08999 * 109.50240 * 180.88269 * 19 18 16 35 35 H 1.08997 * 109.49891 * 60.75927 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3618 1.9918 0.5445 5 6 2.1694 1.7844 -1.4199 6 1 2.8460 1.2739 -2.0894 7 6 1.4512 2.8741 -1.8646 8 7 0.7157 3.5653 -1.0214 9 14 1.5230 3.3689 -3.6644 10 1 0.4489 2.6685 -4.4135 11 1 1.3324 4.8369 -3.7822 12 1 2.8448 2.9945 -4.2283 13 6 3.3811 1.2533 0.6774 14 6 3.2207 0.7668 2.1203 15 6 4.5864 0.7747 2.8110 16 7 5.1376 2.1358 2.7928 17 6 6.3834 2.2096 3.5677 18 6 5.3447 2.6064 1.4173 19 6 4.0016 2.6531 0.6850 20 1 -0.3633 0.4430 0.9273 21 1 -0.3633 0.5815 -0.8473 22 1 -0.3634 -1.0245 -0.0799 23 1 0.2101 4.3318 -1.3342 24 1 4.0318 0.5693 0.1325 25 1 2.8190 -0.2465 2.1202 26 1 2.5389 1.4285 2.6544 27 1 5.2634 0.1017 2.2849 28 1 4.4735 0.4424 3.8429 29 1 7.1189 1.5290 3.1389 30 1 6.7698 3.2284 3.5379 31 1 6.1856 1.9264 4.6015 32 1 5.7825 3.6044 1.4370 33 1 6.0181 1.9248 0.8977 34 1 4.1578 2.9875 -0.3406 35 1 3.3324 3.3451 1.1962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:58 Heat of formation + Delta-G solvation = -57.665851 kcal Electronic energy + Delta-G solvation = -15176.852775 eV Core-core repulsion = 12788.320608 eV Total energy + Delta-G solvation = -2388.532167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.57528 -36.38743 -33.27798 -32.25210 -30.18296 -28.04115 -25.46246 -25.22942 -22.75338 -22.32154 -20.44110 -18.82215 -16.55457 -15.43407 -15.10122 -14.59142 -14.34447 -14.14206 -13.75608 -13.55350 -12.87276 -12.70576 -12.20546 -11.88057 -11.86322 -11.31223 -11.20423 -11.00999 -10.92724 -10.48932 -10.41127 -10.06493 -9.91084 -9.52779 -9.36485 -8.82094 -8.60558 -8.01258 -7.89173 -6.06206 -4.15010 3.27284 3.34602 3.38272 4.34208 4.38633 5.05267 5.34708 5.39072 5.49666 5.56873 5.66821 5.88083 5.91167 5.97910 6.05105 6.22578 6.30085 6.40667 6.47733 6.54073 6.59621 6.78360 6.84823 6.91709 7.13561 7.28237 7.46894 7.48774 7.56825 7.63202 7.83951 8.35491 8.65563 9.11971 9.53944 10.97681 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032540 B = 0.010057 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.268341 B = 2783.479096 C = 3377.755794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.416 6.416 3 C 0.195 3.805 4 H 0.059 0.941 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 C -0.067 4.067 14 C -0.111 4.111 15 C 0.059 3.941 16 N -0.543 5.543 17 C 0.026 3.974 18 C 0.056 3.944 19 C -0.091 4.091 20 H 0.018 0.982 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.263 0.737 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -2.336 5.963 8.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.336 6.336 3 C 0.140 3.860 4 H 0.077 0.923 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.528 5.528 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.086 4.086 14 C -0.148 4.148 15 C -0.069 4.069 16 N -0.268 5.268 17 C -0.122 4.122 18 C -0.072 4.072 19 C -0.129 4.129 20 H 0.037 0.963 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.709 -2.031 6.202 8.670 hybrid contribution 0.383 0.050 -1.418 1.470 sum 6.092 -1.981 4.783 7.994 Atomic orbital electron populations 1.22233 0.83791 0.99025 0.99146 1.87682 1.17552 1.33124 1.95205 1.20050 0.89932 0.80849 0.95213 0.92298 1.21492 1.24711 1.12674 0.97559 0.92711 1.25027 0.94704 0.95978 0.97456 1.69892 1.30067 1.18746 1.34049 0.86653 0.78646 0.77493 0.85580 1.20583 1.21198 1.19753 1.21107 0.98565 0.95726 0.93234 1.21658 0.95005 1.01352 0.96832 1.22115 0.96941 0.88121 0.99690 1.61956 1.26792 1.24019 1.14062 1.22324 0.90866 1.00928 0.98123 1.22220 0.98609 0.98855 0.87467 1.21374 0.93830 0.97503 1.00146 0.96335 0.94258 0.92902 0.92688 0.93059 0.91651 0.91938 0.95572 0.91823 0.96313 0.91816 0.91918 0.91612 0.95646 0.90444 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 10.79 101.05 1.09 2.31 16 2 O -0.42 -10.33 9.72 -35.23 -0.34 -10.67 16 3 C 0.19 4.95 2.02 -27.88 -0.06 4.90 16 4 H 0.06 1.65 6.63 -51.93 -0.34 1.30 16 5 C -0.53 -14.42 7.35 -34.44 -0.25 -14.67 16 6 H 0.05 1.53 7.82 -52.48 -0.41 1.12 16 7 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 8 N -0.89 -24.94 12.62 55.43 0.70 -24.24 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C -0.07 -1.48 2.04 -90.50 -0.18 -1.67 16 14 C -0.11 -2.13 5.20 -26.65 -0.14 -2.27 16 15 C 0.06 0.97 5.46 -3.83 -0.02 0.95 16 16 N -0.54 -8.98 4.91 -242.96 -1.19 -10.17 16 17 C 0.03 0.34 9.59 60.06 0.58 0.92 16 18 C 0.06 0.97 5.46 -3.83 -0.02 0.95 16 19 C -0.09 -1.90 5.09 -26.65 -0.14 -2.03 16 20 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 21 H 0.04 0.94 8.06 -51.93 -0.42 0.52 16 22 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 1.25 7.77 -51.93 -0.40 0.84 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 1.73 7.33 -51.93 -0.38 1.35 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 280.05 15.07 4.22 4.22 Total: -1.00 -28.45 280.05 -7.04 -35.48 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.16 Total: -1.95 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 0.76 Total: -8.77 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: -0.49 Total: -34.41 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.34 Total: -10.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.45 -7.04 -35.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.183 kcal (2) G-P(sol) polarization free energy of solvation -28.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds