Wall clock time and date at job start Mon Mar 30 2020 20:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42891 * 114.00105 * 2 1 4 4 H 1.08999 * 109.47239 * 31.99401 * 3 2 1 5 5 C 1.50698 * 109.47115 * 271.99375 * 3 2 1 6 6 H 1.08007 * 119.99781 * 294.88175 * 5 3 2 7 7 C 1.37877 * 120.00424 * 114.87999 * 5 3 2 8 8 N 1.31515 * 119.99862 * 5.83816 * 7 5 3 9 9 Si 1.86802 * 120.00451 * 185.83721 * 7 5 3 10 10 H 1.48502 * 109.46859 * 89.99502 * 9 7 5 11 11 H 1.48494 * 109.47018 * 209.99831 * 9 7 5 12 12 H 1.48503 * 109.46687 * 330.00065 * 9 7 5 13 13 C 1.53001 * 109.47308 * 151.99358 * 3 2 1 14 14 C 1.53122 * 109.52120 * 299.99653 * 13 3 2 15 15 C 1.53044 * 109.27848 * 182.43555 * 14 13 3 16 16 N 1.46852 * 109.51892 * 59.18091 * 15 14 13 17 17 C 1.46894 * 110.99670 * 174.15803 * 16 15 14 18 18 C 1.46842 * 111.19947 * 298.25754 * 16 15 14 19 19 C 1.53048 * 109.52502 * 61.74367 * 18 16 15 20 20 H 1.08999 * 109.47225 * 295.53621 * 1 2 3 21 21 H 1.08998 * 109.47192 * 55.53785 * 1 2 3 22 22 H 1.09000 * 109.47701 * 175.53931 * 1 2 3 23 23 H 0.96999 * 120.00691 * 180.02562 * 8 7 5 24 24 H 1.08998 * 109.57129 * 60.15592 * 13 3 2 25 25 H 1.09000 * 109.50156 * 62.50131 * 14 13 3 26 26 H 1.08995 * 109.53708 * 302.40064 * 14 13 3 27 27 H 1.08993 * 109.46156 * 299.16733 * 15 14 13 28 28 H 1.08997 * 109.46210 * 179.19459 * 15 14 13 29 29 H 1.08998 * 109.47264 * 60.00475 * 17 16 15 30 30 H 1.09004 * 109.46663 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.47631 * 300.00216 * 17 16 15 32 32 H 1.08998 * 109.46063 * 181.75796 * 18 16 15 33 33 H 1.08999 * 109.46717 * 301.72760 * 18 16 15 34 34 H 1.08999 * 109.50240 * 180.88269 * 19 18 16 35 35 H 1.08997 * 109.49891 * 60.75927 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3618 1.9918 0.5445 5 6 2.1694 1.7844 -1.4199 6 1 2.8460 1.2739 -2.0894 7 6 1.4512 2.8741 -1.8646 8 7 0.7157 3.5653 -1.0214 9 14 1.5230 3.3689 -3.6644 10 1 0.4489 2.6685 -4.4135 11 1 1.3324 4.8369 -3.7822 12 1 2.8448 2.9945 -4.2283 13 6 3.3811 1.2533 0.6774 14 6 3.2207 0.7668 2.1203 15 6 4.5864 0.7747 2.8110 16 7 5.1376 2.1358 2.7928 17 6 6.3834 2.2096 3.5677 18 6 5.3447 2.6064 1.4173 19 6 4.0016 2.6531 0.6850 20 1 -0.3633 0.4430 0.9273 21 1 -0.3633 0.5815 -0.8473 22 1 -0.3634 -1.0245 -0.0799 23 1 0.2101 4.3318 -1.3342 24 1 4.0318 0.5693 0.1325 25 1 2.8190 -0.2465 2.1202 26 1 2.5389 1.4285 2.6544 27 1 5.2634 0.1017 2.2849 28 1 4.4735 0.4424 3.8429 29 1 7.1189 1.5290 3.1389 30 1 6.7698 3.2284 3.5379 31 1 6.1856 1.9264 4.6015 32 1 5.7825 3.6044 1.4370 33 1 6.0181 1.9248 0.8977 34 1 4.1578 2.9875 -0.3406 35 1 3.3324 3.3451 1.1962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:56 Heat of formation + Delta-G solvation = -76.434692 kcal Electronic energy + Delta-G solvation = -15177.666653 eV Core-core repulsion = 12788.320608 eV Total energy + Delta-G solvation = -2389.346045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.10845 -38.18979 -35.05498 -34.13955 -31.66963 -29.76063 -27.20769 -26.93331 -24.38163 -23.82950 -22.12238 -20.47641 -18.65391 -17.17234 -16.73635 -16.28432 -15.91352 -15.57045 -15.54381 -15.27278 -14.57893 -14.20439 -13.75055 -13.54749 -13.19012 -13.03449 -12.90920 -12.73534 -12.47678 -12.29787 -12.01470 -11.82717 -11.79881 -11.20587 -11.05103 -10.82955 -10.66231 -9.95150 -9.19899 -8.15951 -6.32250 1.37227 1.39191 1.49126 2.38448 3.01458 3.09703 3.52321 4.06857 4.08484 4.21831 4.34968 4.53232 4.62887 4.67287 4.69512 4.72015 4.81613 4.86228 4.89761 4.96572 4.98022 5.04801 5.17265 5.20041 5.34050 5.51602 5.62842 5.71088 5.73220 6.19304 6.24631 6.30240 6.60601 7.04178 7.40505 8.87046 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.032540 B = 0.010057 C = 0.008288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.268341 B = 2783.479096 C = 3377.755794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.426 6.426 3 C 0.198 3.802 4 H 0.028 0.972 5 C -0.543 4.543 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.268 1.268 13 C -0.066 4.066 14 C -0.103 4.103 15 C 0.065 3.935 16 N -0.560 5.560 17 C 0.027 3.973 18 C 0.065 3.935 19 C -0.082 4.082 20 H 0.024 0.976 21 H 0.013 0.987 22 H 0.091 0.909 23 H 0.265 0.735 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.032 0.968 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.054 0.946 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.228 -2.744 6.504 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.346 6.346 3 C 0.142 3.858 4 H 0.046 0.954 5 C -0.581 4.581 6 H 0.061 0.939 7 C -0.171 4.171 8 N -0.554 5.554 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.193 1.193 13 C -0.085 4.085 14 C -0.141 4.141 15 C -0.062 4.062 16 N -0.285 5.285 17 C -0.121 4.121 18 C -0.062 4.062 19 C -0.120 4.120 20 H 0.042 0.958 21 H 0.032 0.968 22 H 0.110 0.890 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.901 -2.446 6.751 9.959 hybrid contribution -0.039 0.149 -1.565 1.573 sum 6.862 -2.298 5.186 8.903 Atomic orbital electron populations 1.22356 0.82436 1.01064 0.98303 1.87649 1.19088 1.32652 1.95191 1.19971 0.91082 0.80402 0.94324 0.95394 1.21657 1.24847 1.13093 0.98489 0.93896 1.25694 0.94269 0.95879 1.01243 1.69999 1.30616 1.19069 1.35675 0.85722 0.78732 0.77408 0.80829 1.20205 1.20430 1.19271 1.21048 0.96338 0.96300 0.94769 1.21540 0.96934 1.00682 0.94944 1.22052 0.94953 0.88481 1.00761 1.61913 1.29095 1.23981 1.13492 1.22401 0.89325 1.02020 0.98342 1.22063 0.96047 1.00166 0.87972 1.21214 0.95567 0.96123 0.99121 0.95771 0.96831 0.89040 0.92549 0.93823 0.91645 0.93345 0.95018 0.89292 0.95378 0.90712 0.90266 0.89960 0.95018 0.92735 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.43 10.79 113.37 1.22 3.66 16 2 O -0.43 -21.34 9.72 -148.98 -1.45 -22.78 16 3 C 0.20 10.33 2.02 29.85 0.06 10.39 16 4 H 0.03 1.63 6.63 -2.39 -0.02 1.61 16 5 C -0.54 -30.46 7.35 25.60 0.19 -30.27 16 6 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 7 C 0.03 1.64 5.45 84.65 0.46 2.10 16 8 N -0.91 -52.47 12.62 21.45 0.27 -52.20 16 9 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 C -0.07 -2.92 2.04 -10.71 -0.02 -2.94 16 14 C -0.10 -3.91 5.20 30.65 0.16 -3.75 16 15 C 0.07 1.99 5.46 86.33 0.47 2.47 16 16 N -0.56 -17.18 4.91 -922.58 -4.53 -21.71 16 17 C 0.03 0.60 9.59 127.69 1.22 1.83 16 18 C 0.07 2.17 5.46 86.33 0.47 2.64 16 19 C -0.08 -3.49 5.09 30.65 0.16 -3.34 16 20 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 21 H 0.01 0.64 8.06 -2.39 -0.02 0.62 16 22 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 23 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 2.45 7.77 -2.39 -0.02 2.43 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 29 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 1.52 8.09 -2.38 -0.02 1.50 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 2.45 8.09 -2.39 -0.02 2.43 16 33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 2.51 7.33 -2.39 -0.02 2.49 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.36 280.05 1.74 -59.62 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.02 Total: 8.62 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 4.39 Total: -17.23 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -4.26 Total: -73.91 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.45 Total: -22.78 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -61.36 1.74 -59.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds