Wall clock time and date at job start Mon Mar 30 2020 20:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00005 * 2 1 4 4 C 1.53007 * 109.46805 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.50327 * 305.22302 * 4 3 2 6 6 H 1.08000 * 119.99934 * 117.73012 * 5 4 3 7 7 C 1.37880 * 119.99762 * 298.00269 * 5 4 3 8 8 N 1.31506 * 119.99881 * 6.28031 * 7 5 4 9 9 Si 1.86800 * 119.99456 * 186.27687 * 7 5 4 10 10 H 1.48500 * 109.47161 * 60.00345 * 9 7 5 11 11 H 1.48503 * 109.47020 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47533 * 299.99949 * 9 7 5 13 13 C 1.53120 * 109.50103 * 185.14449 * 4 3 2 14 14 C 1.53117 * 109.15968 * 182.36854 * 13 4 3 15 15 C 1.53030 * 109.28081 * 57.65317 * 14 13 4 16 16 N 1.46846 * 109.52514 * 300.82031 * 15 14 13 17 17 C 1.46896 * 111.00369 * 185.83728 * 16 15 14 18 18 C 1.46854 * 111.19593 * 61.74179 * 16 15 14 19 19 H 1.08996 * 109.46715 * 300.00063 * 1 2 3 20 20 H 1.09008 * 109.47000 * 59.99837 * 1 2 3 21 21 H 1.08998 * 109.47563 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47050 * 60.00536 * 3 2 1 23 23 H 1.09001 * 109.47159 * 300.00178 * 3 2 1 24 24 H 0.97006 * 119.99668 * 180.02562 * 8 7 5 25 25 H 1.09000 * 109.52030 * 302.27255 * 13 4 3 26 26 H 1.09003 * 109.52244 * 62.39729 * 13 4 3 27 27 H 1.09000 * 109.50342 * 177.59873 * 14 13 4 28 28 H 1.08999 * 109.49905 * 297.67256 * 14 13 4 29 29 H 1.09003 * 109.46421 * 60.83697 * 15 14 13 30 30 H 1.08997 * 109.46365 * 180.80672 * 15 14 13 31 31 H 1.09003 * 109.47157 * 63.95395 * 17 16 15 32 32 H 1.09002 * 109.47542 * 183.95461 * 17 16 15 33 33 H 1.08997 * 109.47257 * 303.95790 * 17 16 15 34 34 H 1.09002 * 109.45849 * 178.24419 * 18 16 15 35 35 H 1.08996 * 109.46354 * 58.27624 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9719 0.3283 1.1614 6 1 4.4906 -0.6017 0.9815 7 6 3.7039 0.7294 2.4531 8 7 2.9617 1.7931 2.6706 9 14 4.3949 -0.2381 3.8938 10 1 5.8781 -0.2438 3.8204 11 1 3.9643 0.3941 5.1667 12 1 3.8913 -1.6339 3.8399 13 6 4.1586 2.5773 0.1301 14 6 5.6836 2.4531 0.0704 15 6 6.0844 1.7754 -1.2418 16 7 5.4639 0.4466 -1.3175 17 6 5.9364 -0.2887 -2.4981 18 6 3.9986 0.5437 -1.3096 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6887 1.8463 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 2.7735 2.0755 3.5794 25 1 3.8123 3.2087 -0.6881 26 1 3.8652 3.0206 1.0817 27 1 6.1317 3.4455 0.1192 28 1 6.0330 1.8543 0.9115 29 1 5.7467 2.3822 -2.0820 30 1 7.1688 1.6725 -1.2810 31 1 7.0070 -0.4722 -2.4074 32 1 5.4094 -1.2402 -2.5686 33 1 5.7435 0.3007 -3.3944 34 1 3.5681 -0.4539 -1.3980 35 1 3.6707 1.1563 -2.1494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261326654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:39:59 Heat of formation + Delta-G solvation = -59.940386 kcal Electronic energy + Delta-G solvation = -15658.068225 eV Core-core repulsion = 13269.437427 eV Total energy + Delta-G solvation = -2388.630798 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.17181 -38.04045 -35.50111 -33.16688 -32.08623 -27.84958 -27.37863 -26.88544 -25.73940 -23.43769 -22.04662 -20.36273 -17.67101 -16.88144 -16.73373 -16.50975 -16.03990 -15.53544 -15.43030 -14.98940 -14.66108 -14.08285 -13.52424 -13.36821 -13.01316 -12.97392 -12.69299 -12.65336 -12.46458 -12.29018 -12.07281 -11.66653 -11.42346 -11.02204 -10.88503 -10.49747 -10.28819 -10.03996 -8.93153 -7.85134 -5.88637 1.47441 1.47781 1.54770 2.57584 3.25852 3.37510 3.43837 4.26448 4.30039 4.43174 4.48034 4.58912 4.65493 4.68004 4.71727 4.78576 4.84405 4.86098 4.90332 5.00711 5.05405 5.10746 5.22589 5.36149 5.59608 5.65833 5.75606 5.94714 6.17937 6.44268 6.51990 6.62649 6.81777 7.08212 7.71378 9.15290 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.015720 C = 0.011656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.664000 B = 1780.719682 C = 2401.559655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.083 3.917 4 C 0.065 3.935 5 C -0.450 4.450 6 H 0.040 0.960 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.932 3.068 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.285 1.285 13 C -0.102 4.102 14 C -0.099 4.099 15 C 0.068 3.932 16 N -0.550 5.550 17 C 0.029 3.971 18 C 0.090 3.910 19 H 0.026 0.974 20 H 0.043 0.957 21 H 0.091 0.909 22 H 0.057 0.943 23 H 0.009 0.991 24 H 0.252 0.748 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.051 0.949 35 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 0.252 -7.541 7.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.318 6.318 3 C 0.006 3.994 4 C 0.065 3.935 5 C -0.489 4.489 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.558 5.558 9 Si 0.761 3.239 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.211 1.211 13 C -0.140 4.140 14 C -0.136 4.136 15 C -0.059 4.059 16 N -0.275 5.275 17 C -0.119 4.119 18 C -0.038 4.038 19 H 0.044 0.956 20 H 0.062 0.938 21 H 0.110 0.890 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 1.682 -0.088 -6.975 7.176 hybrid contribution -0.413 0.195 0.364 0.585 sum 1.268 0.108 -6.611 6.733 Atomic orbital electron populations 1.22734 0.82075 1.02559 0.99268 1.87887 1.19132 1.29631 1.95188 1.22593 0.96300 0.83070 0.97457 1.18302 0.89303 0.93401 0.92542 1.20827 1.32988 1.04923 0.90136 0.94199 1.25312 0.95910 0.96198 1.00168 1.69876 1.39331 1.26604 1.20023 0.86022 0.78925 0.78981 0.79998 1.20326 1.21664 1.21091 1.21410 0.95302 0.97016 1.00318 1.21357 0.96053 0.98758 0.97474 1.22006 0.98878 0.88520 0.96526 1.61730 1.07042 1.18384 1.40311 1.22363 1.01340 0.98003 0.90184 1.21901 0.86896 0.98852 0.96132 0.95578 0.93849 0.89009 0.92499 0.97281 0.93830 0.95550 0.91610 0.91789 0.93146 0.95475 0.90156 0.90508 0.92008 0.95593 0.93038 0.97379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 11.01 113.37 1.25 2.35 16 2 O -0.40 -18.93 9.75 -148.98 -1.45 -20.39 16 3 C 0.08 3.99 4.54 71.98 0.33 4.31 16 4 C 0.07 3.15 0.34 -52.87 -0.02 3.13 16 5 C -0.45 -24.44 6.03 25.60 0.15 -24.28 16 6 H 0.04 2.29 7.73 -2.91 -0.02 2.27 16 7 C 0.02 1.11 5.12 84.66 0.43 1.55 16 8 N -0.92 -51.01 9.46 21.45 0.20 -50.81 16 9 Si 0.93 45.09 29.54 68.60 2.03 47.12 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 12 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 13 C -0.10 -4.68 4.58 30.67 0.14 -4.54 16 14 C -0.10 -4.00 5.84 30.64 0.18 -3.82 16 15 C 0.07 2.43 5.46 86.32 0.47 2.90 16 16 N -0.55 -21.58 4.50 -922.60 -4.15 -25.73 16 17 C 0.03 0.89 9.62 127.69 1.23 2.11 16 18 C 0.09 3.89 4.02 86.32 0.35 4.24 16 19 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 21 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 22 H 0.06 3.03 6.17 -2.39 -0.01 3.02 16 23 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.25 13.75 8.31 -92.70 -0.77 12.98 16 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 3.38 6.12 -2.39 -0.01 3.37 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 2.33 7.35 -2.39 -0.02 2.31 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.86 8.02 -2.39 -0.02 1.84 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 2.34 7.75 -2.39 -0.02 2.33 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -59.56 272.12 2.17 -57.39 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.03 Total: 4.46 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.51 Total: -12.04 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -3.95 Total: -76.54 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -1.45 Total: -20.39 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -59.56 2.17 -57.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261326654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.546 kcal (2) G-P(sol) polarization free energy of solvation -59.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds