Wall clock time and date at job start Mon Mar 30 2020 20:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46854 * 111.00170 * 2 1 4 4 C 1.53036 * 109.52473 * 185.84025 * 3 2 1 5 5 C 1.53120 * 109.27635 * 300.81472 * 4 3 2 6 6 C 1.53006 * 109.51942 * 177.56065 * 5 4 3 7 7 H 1.09005 * 109.46822 * 300.12824 * 6 5 4 8 8 C 1.50700 * 109.46626 * 180.12941 * 6 5 4 9 9 H 1.08004 * 120.00160 * 303.52341 * 8 6 5 10 10 C 1.37877 * 119.99840 * 123.25544 * 8 6 5 11 11 N 1.31514 * 119.99828 * 173.14431 * 10 8 6 12 12 Si 1.86801 * 120.00065 * 353.13692 * 10 8 6 13 13 H 1.48496 * 109.47142 * 84.71776 * 12 10 8 14 14 H 1.48502 * 109.47220 * 204.71481 * 12 10 8 15 15 H 1.48504 * 109.47143 * 324.71300 * 12 10 8 16 16 C 1.53001 * 109.47149 * 60.12931 * 6 5 4 17 17 O 1.42893 * 109.46989 * 184.37824 * 16 6 5 18 18 C 1.53119 * 109.21134 * 57.62823 * 5 4 3 19 19 C 1.46848 * 111.00283 * 124.20634 * 2 1 3 20 20 H 1.08999 * 109.47023 * 59.99995 * 1 2 3 21 21 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47137 * 300.00275 * 1 2 3 23 23 H 1.08991 * 109.46372 * 65.81838 * 3 2 1 24 24 H 1.09006 * 109.45883 * 305.85534 * 3 2 1 25 25 H 1.09001 * 109.49877 * 180.87787 * 4 3 2 26 26 H 1.09000 * 109.53580 * 60.77711 * 4 3 2 27 27 H 1.08993 * 109.52666 * 297.69011 * 5 4 3 28 28 H 0.96999 * 119.99802 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.47041 * 304.37937 * 16 6 5 30 30 H 1.09002 * 109.46858 * 64.38036 * 16 6 5 31 31 H 0.96702 * 114.00558 * 184.93080 * 17 16 6 32 32 H 1.08996 * 109.50730 * 62.31579 * 18 5 4 33 33 H 1.08995 * 109.50259 * 182.43685 * 18 5 4 34 34 H 1.09009 * 109.46160 * 294.17712 * 19 2 1 35 35 H 1.08997 * 109.46347 * 54.15304 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5371 1.0144 6 6 5.6361 0.4451 0.8405 7 1 5.8643 -0.0541 -0.1012 8 6 6.2256 -0.3423 1.9823 9 1 6.0518 -0.0288 3.0011 10 6 6.9824 -1.4661 1.7264 11 7 7.6079 -2.0755 2.7098 12 14 7.1189 -2.1232 -0.0169 13 1 8.1983 -1.3995 -0.7355 14 1 7.4374 -3.5730 0.0241 15 1 5.8296 -1.9195 -0.7251 16 6 6.2345 1.8532 0.8294 17 8 7.6365 1.7728 0.5654 18 6 3.5183 -0.8714 1.0225 19 6 1.9953 -0.7707 1.1338 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.7324 1.8609 0.9375 24 1 1.5634 1.9258 -0.8330 25 1 3.9098 2.3513 -0.1311 26 1 3.7819 0.8571 -1.0906 27 1 3.8896 1.0362 1.9559 28 1 8.1400 -2.8663 2.5298 29 1 5.7519 2.4469 0.0530 30 1 6.0739 2.3239 1.7994 31 1 8.0960 2.6221 0.6179 32 1 3.7816 -1.3846 0.0977 33 1 3.9102 -1.4291 1.8731 34 1 1.7325 -0.2707 2.0661 35 1 1.5636 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261332600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:18 Heat of formation + Delta-G solvation = -60.224840 kcal Electronic energy + Delta-G solvation = -15198.974554 eV Core-core repulsion = 12810.331421 eV Total energy + Delta-G solvation = -2388.643133 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -38.80128 -36.30062 -34.19696 -32.12285 -30.38859 -29.54830 -25.70046 -24.85893 -22.46781 -22.23294 -19.72333 -18.92569 -16.91693 -16.44714 -15.28616 -14.77355 -14.38989 -14.24025 -13.62392 -13.45742 -12.96685 -12.81550 -12.32057 -12.02972 -11.99034 -11.71937 -11.31701 -11.18364 -10.75542 -10.56677 -10.26297 -10.16063 -9.69305 -9.47732 -9.25242 -9.05486 -8.63958 -8.37577 -8.06428 -5.94972 -3.91737 3.45167 3.49820 3.53458 4.21923 4.58371 5.16798 5.23320 5.32521 5.36638 5.44036 5.54677 5.68236 5.77392 5.87203 5.90561 6.00119 6.08047 6.13081 6.27766 6.30299 6.39581 6.55324 6.61825 6.86890 6.95857 7.10576 7.21613 7.32530 7.43626 7.45828 7.87878 8.58954 8.61879 9.08124 9.70991 11.18650 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031791 B = 0.010912 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.547592 B = 2565.277479 C = 3004.569550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.120 4.120 5 C -0.070 4.070 6 C 0.014 3.986 7 H 0.042 0.958 8 C -0.495 4.495 9 H 0.068 0.932 10 C 0.079 3.921 11 N -0.905 5.905 12 Si 0.876 3.124 13 H -0.275 1.275 14 H -0.295 1.295 15 H -0.264 1.264 16 C 0.086 3.914 17 O -0.558 6.558 18 C -0.101 4.101 19 C 0.056 3.944 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.020 0.980 23 H 0.028 0.972 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.030 0.970 31 H 0.355 0.645 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.028 0.972 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 6.390 -5.305 13.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.158 4.158 5 C -0.089 4.089 6 C -0.005 4.005 7 H 0.061 0.939 8 C -0.532 4.532 9 H 0.086 0.914 10 C -0.123 4.123 11 N -0.543 5.543 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.222 1.222 15 H -0.189 1.189 16 C 0.008 3.992 17 O -0.360 6.360 18 C -0.139 4.139 19 C -0.072 4.072 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.046 0.954 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.198 0.802 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.601 5.350 -5.752 13.194 hybrid contribution -0.046 0.628 -0.017 0.629 sum -10.647 5.977 -5.769 13.504 Atomic orbital electron populations 1.22323 0.88322 1.01588 0.99987 1.61947 1.06608 1.14055 1.44366 1.22085 0.96610 0.88728 0.99436 1.21847 0.93122 1.00255 1.00562 1.21175 0.96711 0.94924 0.96133 1.19237 0.90261 0.92348 0.98620 0.93943 1.20725 1.30607 1.09237 0.92659 0.91388 1.24985 0.94285 0.96586 0.96395 1.69920 1.31806 1.20742 1.31843 0.86884 0.79105 0.77252 0.86282 1.20098 1.22237 1.18937 1.22490 0.80887 0.99671 0.96153 1.86677 1.21632 1.33835 1.93815 1.21544 0.91154 0.97885 1.03321 1.22215 0.97460 0.97062 0.90448 0.91895 0.91726 0.96194 0.95391 0.91727 0.91998 0.91638 0.92601 0.92935 0.96587 0.95191 0.80157 0.92049 0.89649 0.95355 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.59 60.06 0.58 0.90 16 2 N -0.54 -8.41 4.91 -242.95 -1.19 -9.60 16 3 C 0.06 0.88 5.46 -3.83 -0.02 0.85 16 4 C -0.12 -2.02 4.96 -26.65 -0.13 -2.15 16 5 C -0.07 -1.40 1.83 -90.49 -0.17 -1.57 16 6 C 0.01 0.34 1.59 -91.77 -0.15 0.19 16 7 H 0.04 1.06 4.71 -51.93 -0.24 0.82 16 8 C -0.49 -13.83 7.40 -34.44 -0.25 -14.09 16 9 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 10 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 11 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 12 Si 0.88 22.77 27.01 -169.99 -4.59 18.18 16 13 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 15 H -0.26 -6.53 6.23 56.52 0.35 -6.18 16 16 C 0.09 1.79 6.19 37.16 0.23 2.02 16 17 O -0.56 -12.25 13.40 -35.23 -0.47 -12.72 16 18 C -0.10 -2.02 5.09 -26.65 -0.14 -2.15 16 19 C 0.06 0.92 5.46 -3.83 -0.02 0.89 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 25 H 0.06 0.95 6.48 -51.93 -0.34 0.61 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.02 0.29 6.27 -51.93 -0.33 -0.03 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.36 5.63 9.12 45.56 0.42 6.05 16 32 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 33 H 0.09 1.87 7.32 -51.93 -0.38 1.49 16 34 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 LS Contribution 271.98 15.07 4.10 4.10 Total: -1.00 -32.10 271.98 -6.65 -38.75 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.10 Total: 1.60 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.17 Total: -12.88 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.42 Total: -37.03 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.47 Total: -12.72 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.59 Total: 18.18 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.10 -6.65 -38.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.474 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds