Wall clock time and date at job start Mon Mar 30 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46842 * 110.99964 * 2 1 4 4 C 1.53041 * 109.52264 * 185.83850 * 3 2 1 5 5 C 1.53117 * 109.31073 * 300.84480 * 4 3 2 6 6 C 1.53122 * 109.15968 * 57.59339 * 5 4 3 7 7 H 1.08996 * 109.50327 * 62.36466 * 6 5 4 8 8 C 1.53006 * 109.50498 * 182.44343 * 6 5 4 9 9 H 1.09004 * 109.46806 * 59.91799 * 8 6 5 10 10 C 1.50698 * 109.46906 * 299.92524 * 8 6 5 11 11 H 1.08001 * 119.99894 * 303.58594 * 10 8 6 12 12 C 1.37878 * 120.00371 * 123.31618 * 10 8 6 13 13 N 1.31508 * 120.00363 * 173.10202 * 12 10 8 14 14 Si 1.86800 * 119.99643 * 353.10532 * 12 10 8 15 15 H 1.48501 * 109.47312 * 84.70236 * 14 12 10 16 16 H 1.48501 * 109.47179 * 204.70336 * 14 12 10 17 17 H 1.48499 * 109.47197 * 324.70259 * 14 12 10 18 18 C 1.52987 * 109.47078 * 179.97438 * 8 6 5 19 19 O 1.42899 * 109.47123 * 184.30198 * 18 8 6 20 20 C 1.46850 * 110.99711 * 124.21303 * 2 1 3 21 21 H 1.08997 * 109.47031 * 295.78672 * 1 2 3 22 22 H 1.09004 * 109.47162 * 55.78483 * 1 2 3 23 23 H 1.08994 * 109.47291 * 175.78802 * 1 2 3 24 24 H 1.08994 * 109.46310 * 305.85820 * 3 2 1 25 25 H 1.09003 * 109.46392 * 65.82804 * 3 2 1 26 26 H 1.08997 * 109.50092 * 60.76507 * 4 3 2 27 27 H 1.09001 * 109.50096 * 180.88127 * 4 3 2 28 28 H 1.09001 * 109.49572 * 297.70983 * 5 4 3 29 29 H 1.09001 * 109.55586 * 177.51787 * 5 4 3 30 30 H 0.97000 * 120.00127 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.47606 * 304.30181 * 18 8 6 32 32 H 1.08999 * 109.47338 * 64.30625 * 18 8 6 33 33 H 0.96702 * 114.00324 * 184.93034 * 19 18 8 34 34 H 1.09001 * 109.46048 * 54.14434 * 20 2 1 35 35 H 1.08998 * 109.45015 * 294.16806 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1196 0.5366 1.0137 6 6 3.5181 -0.8716 1.0207 7 1 3.7813 -1.3843 0.0956 8 6 4.0680 -1.6561 2.2138 9 1 3.8046 -1.1428 3.1386 10 6 5.5678 -1.7530 2.1028 11 1 6.0173 -2.1814 1.2192 12 6 6.3663 -1.2899 3.1270 13 7 7.6647 -1.4959 3.0932 14 14 5.6036 -0.3700 4.5629 15 1 5.1113 -1.3444 5.5697 16 1 6.6245 0.5111 5.1846 17 1 4.4687 0.4545 4.0758 18 6 3.4661 -3.0625 2.2204 19 8 3.9011 -3.7613 3.3885 20 6 1.9952 -0.7709 1.1337 21 1 -0.3633 0.4470 0.9253 22 1 -0.3634 0.5779 -0.8498 23 1 -0.3633 -1.0248 -0.0755 24 1 1.5634 1.9257 -0.8329 25 1 1.7325 1.8608 0.9376 26 1 3.7814 0.8568 -1.0906 27 1 3.9099 2.3512 -0.1310 28 1 3.8901 1.0353 1.9554 29 1 5.2004 0.4704 0.8895 30 1 8.2263 -1.1704 3.8139 31 1 2.3784 -2.9923 2.2230 32 1 3.7932 -3.6019 1.3315 33 1 3.6192 -4.6857 3.4217 34 1 1.5633 -1.7716 1.1241 35 1 1.7324 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261333957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:24 Heat of formation + Delta-G solvation = -60.233072 kcal Electronic energy + Delta-G solvation = -15261.803562 eV Core-core repulsion = 12873.160073 eV Total energy + Delta-G solvation = -2388.643490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.83353 -36.20518 -34.03872 -32.25954 -31.44630 -28.02440 -26.46264 -24.71940 -22.66567 -22.05497 -19.65721 -18.93322 -16.97205 -16.46891 -15.25283 -14.78780 -14.29716 -14.16213 -13.62173 -13.52546 -13.25553 -12.63020 -12.47662 -12.04393 -11.88114 -11.70486 -11.52253 -11.12047 -10.78633 -10.58980 -10.22833 -10.06198 -9.69788 -9.52484 -9.30301 -9.07646 -8.66453 -8.39341 -8.05925 -5.96451 -3.92825 3.40398 3.45526 3.48924 4.22195 4.55406 5.15193 5.25457 5.32255 5.37749 5.43861 5.54409 5.67410 5.76251 5.84867 5.91471 6.04589 6.09276 6.16293 6.24761 6.29832 6.35089 6.54992 6.58367 6.85335 6.96595 7.03504 7.24406 7.35040 7.37927 7.47712 7.86164 8.57751 8.61040 9.07534 9.69213 11.17257 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.011380 C = 0.009712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.439911 B = 2459.843958 C = 2882.289606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.544 5.544 3 C 0.058 3.942 4 C -0.118 4.118 5 C -0.107 4.107 6 C -0.066 4.066 7 H 0.069 0.931 8 C 0.014 3.986 9 H 0.040 0.960 10 C -0.492 4.492 11 H 0.070 0.930 12 C 0.079 3.921 13 N -0.904 5.904 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.295 1.295 17 H -0.269 1.269 18 C 0.086 3.914 19 O -0.558 6.558 20 C 0.053 3.947 21 H 0.019 0.981 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.261 0.739 31 H 0.014 0.986 32 H 0.033 0.967 33 H 0.356 0.644 34 H 0.070 0.930 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.490 2.999 -4.380 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.070 4.070 4 C -0.156 4.156 5 C -0.144 4.144 6 C -0.085 4.085 7 H 0.088 0.912 8 C -0.005 4.005 9 H 0.058 0.942 10 C -0.529 4.529 11 H 0.089 0.911 12 C -0.122 4.122 13 N -0.542 5.542 14 Si 0.705 3.295 15 H -0.201 1.201 16 H -0.222 1.222 17 H -0.194 1.194 18 C 0.008 3.992 19 O -0.360 6.360 20 C -0.074 4.074 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.199 0.801 34 H 0.088 0.912 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.886 3.410 -4.581 13.187 hybrid contribution -0.929 0.315 1.451 1.752 sum -12.815 3.726 -3.130 13.708 Atomic orbital electron populations 1.22329 0.88380 1.01764 0.99802 1.61972 1.06582 1.13801 1.44455 1.22083 0.96542 0.88977 0.99431 1.21646 0.93574 0.99920 1.00435 1.21528 1.01908 0.94658 0.96314 1.21200 0.90420 0.96442 1.00419 0.91241 1.19244 0.97283 0.89881 0.94131 0.94231 1.20699 0.87774 1.39895 1.04577 0.91150 1.24974 0.94563 0.95464 0.97218 1.69910 1.04272 1.46630 1.33365 0.86888 0.78697 0.80237 0.83646 1.20054 1.22183 1.19399 1.22488 0.93910 0.96114 0.86666 1.86674 1.79772 1.25833 1.43704 1.22436 0.97656 0.97080 0.90225 0.96234 0.91901 0.91680 0.91652 0.95519 0.91406 0.92269 0.93388 0.89799 0.92911 0.96802 0.94843 0.80098 0.91168 0.95588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.59 60.07 0.58 0.90 16 2 N -0.54 -8.47 4.91 -242.96 -1.19 -9.67 16 3 C 0.06 0.85 5.47 -3.83 -0.02 0.83 16 4 C -0.12 -1.89 6.09 -26.65 -0.16 -2.05 16 5 C -0.11 -2.11 4.99 -26.61 -0.13 -2.25 16 6 C -0.07 -1.32 1.92 -90.53 -0.17 -1.50 16 7 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 8 C 0.01 0.33 1.60 -91.78 -0.15 0.19 16 9 H 0.04 0.98 4.71 -51.93 -0.24 0.74 16 10 C -0.49 -13.72 7.39 -34.44 -0.25 -13.98 16 11 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 12 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 13 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 14 Si 0.88 22.67 27.01 -169.99 -4.59 18.08 16 15 H -0.27 -7.24 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.27 -6.59 6.24 56.52 0.35 -6.24 16 18 C 0.09 1.80 6.19 37.15 0.23 2.03 16 19 O -0.56 -12.19 13.39 -35.23 -0.47 -12.67 16 20 C 0.05 0.93 4.38 -3.83 -0.02 0.91 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 22 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.99 7.66 -51.93 -0.40 0.59 16 29 H 0.08 1.85 7.32 -51.93 -0.38 1.47 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.01 0.25 6.23 -51.93 -0.32 -0.07 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.36 5.61 9.12 45.56 0.42 6.02 16 34 H 0.07 1.16 6.37 -51.93 -0.33 0.83 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 271.90 15.07 4.10 4.10 Total: -1.00 -31.86 271.90 -6.67 -38.53 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.09 Total: 1.64 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -0.20 Total: -12.70 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.42 Total: -36.98 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.47 Total: -12.67 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.59 Total: 18.08 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.86 -6.67 -38.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.701 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds