Wall clock time and date at job start Mon Mar 30 2020 20:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46849 * 110.99404 * 2 1 4 4 C 1.53041 * 109.51928 * 174.15935 * 3 2 1 5 5 C 1.53120 * 109.27588 * 59.18317 * 4 3 2 6 6 C 1.53121 * 109.15765 * 302.34136 * 5 4 3 7 7 H 1.08995 * 109.50721 * 297.67291 * 6 5 4 8 8 C 1.53009 * 109.50259 * 177.59677 * 6 5 4 9 9 H 1.08995 * 109.46855 * 300.08002 * 8 6 5 10 10 C 1.50705 * 109.46957 * 180.02562 * 8 6 5 11 11 H 1.07995 * 119.99944 * 302.24847 * 10 8 6 12 12 C 1.37871 * 119.99626 * 122.25477 * 10 8 6 13 13 N 1.31513 * 119.99990 * 173.46967 * 12 10 8 14 14 Si 1.86804 * 120.00255 * 353.46244 * 12 10 8 15 15 H 1.48499 * 109.46822 * 84.90505 * 14 12 10 16 16 H 1.48504 * 109.46828 * 204.90229 * 14 12 10 17 17 H 1.48500 * 109.46867 * 324.90329 * 14 12 10 18 18 C 1.52997 * 109.46959 * 60.07907 * 8 6 5 19 19 O 1.42894 * 109.47088 * 183.15817 * 18 8 6 20 20 C 1.46847 * 110.99416 * 235.75235 * 2 1 3 21 21 H 1.08998 * 109.47346 * 56.04556 * 1 2 3 22 22 H 1.09006 * 109.46737 * 176.04901 * 1 2 3 23 23 H 1.09001 * 109.46979 * 296.04331 * 1 2 3 24 24 H 1.09005 * 109.46457 * 54.14909 * 3 2 1 25 25 H 1.08999 * 109.46597 * 294.17525 * 3 2 1 26 26 H 1.08996 * 109.50851 * 299.23735 * 4 3 2 27 27 H 1.09000 * 109.50102 * 179.11855 * 4 3 2 28 28 H 1.09003 * 109.52498 * 182.44285 * 5 4 3 29 29 H 1.09001 * 109.52874 * 62.24665 * 5 4 3 30 30 H 0.96998 * 120.00512 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47461 * 303.16058 * 18 8 6 32 32 H 1.09004 * 109.47101 * 63.15861 * 18 8 6 33 33 H 0.96710 * 114.00010 * 184.92920 * 19 18 8 34 34 H 1.08993 * 109.42727 * 65.80152 * 20 2 1 35 35 H 1.09000 * 109.49435 * 305.83091 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5372 -1.0144 6 6 3.5181 -0.8713 -1.0208 7 1 3.7820 -1.3837 -0.0957 8 6 4.0681 -1.6557 -2.2139 9 1 3.8039 -1.1429 -3.1387 10 6 3.4760 -3.0415 -2.2199 11 1 3.6042 -3.6872 -1.3637 12 6 2.7708 -3.4851 -3.3184 13 7 2.3647 -4.7345 -3.3785 14 14 2.3920 -2.3114 -4.7215 15 1 3.5459 -2.2676 -5.6553 16 1 1.1850 -2.7814 -5.4478 17 1 2.1442 -0.9524 -4.1767 18 6 5.5908 -1.7533 -2.1019 19 8 6.1112 -2.4216 -3.2527 20 6 1.9952 -0.7716 -1.1333 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 -0.3633 0.4512 0.9233 24 1 1.5633 1.9258 0.8330 25 1 1.7324 1.8609 -0.9376 26 1 3.7814 0.8569 1.0906 27 1 3.9098 2.3514 0.1310 28 1 5.1997 0.4716 -0.8906 29 1 3.8886 1.0356 -1.9561 30 1 1.8682 -5.0465 -4.1512 31 1 6.0156 -0.7513 -2.0405 32 1 5.8539 -2.3150 -1.2056 33 1 7.0634 -2.5863 -3.2149 34 1 1.7317 -0.2720 -2.0655 35 1 1.5639 -1.7726 -1.1233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261333959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:33 Heat of formation + Delta-G solvation = -60.427217 kcal Electronic energy + Delta-G solvation = -15304.187561 eV Core-core repulsion = 12915.535653 eV Total energy + Delta-G solvation = -2388.651908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -38.77329 -36.21376 -33.93442 -32.54099 -31.19666 -28.01175 -26.43726 -24.69226 -22.54178 -22.09657 -19.69263 -18.93287 -16.92963 -16.45539 -15.16898 -14.71945 -14.29107 -14.11827 -13.87502 -13.46687 -12.92730 -12.75956 -12.39484 -12.07362 -11.90255 -11.68524 -11.19742 -11.10030 -10.75283 -10.73668 -10.29396 -10.20623 -9.77011 -9.56198 -9.26196 -9.11582 -8.65913 -8.40900 -7.85928 -5.97271 -3.93596 3.38156 3.43577 3.47187 4.37372 4.53623 5.16802 5.27429 5.30307 5.36743 5.44231 5.64503 5.74232 5.79658 5.94639 6.01130 6.07630 6.15037 6.20783 6.22896 6.29980 6.40052 6.48820 6.48992 6.79577 6.86092 6.91402 7.18206 7.35995 7.56965 7.62784 7.84631 8.57308 8.61220 9.07291 9.68079 11.16525 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.012944 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.462028 B = 2162.728066 C = 2761.293531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.066 4.066 7 H 0.069 0.931 8 C 0.013 3.987 9 H 0.039 0.961 10 C -0.494 4.494 11 H 0.071 0.929 12 C 0.079 3.921 13 N -0.903 5.903 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.295 1.295 17 H -0.269 1.269 18 C 0.088 3.912 19 O -0.558 6.558 20 C 0.070 3.930 21 H 0.018 0.982 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.261 0.739 31 H 0.016 0.984 32 H 0.032 0.968 33 H 0.356 0.644 34 H 0.022 0.978 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 11.425 5.130 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.085 4.085 7 H 0.088 0.912 8 C -0.006 4.006 9 H 0.058 0.942 10 C -0.531 4.531 11 H 0.089 0.911 12 C -0.122 4.122 13 N -0.541 5.541 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.221 1.221 17 H -0.195 1.195 18 C 0.010 3.990 19 O -0.359 6.359 20 C -0.057 4.057 21 H 0.037 0.963 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.050 0.950 33 H 0.199 0.801 34 H 0.041 0.959 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.764 11.087 5.260 12.295 hybrid contribution 0.045 0.930 -1.407 1.687 sum 0.809 12.016 3.853 12.645 Atomic orbital electron populations 1.22310 0.88141 1.01979 0.99703 1.61960 1.06893 1.12873 1.45323 1.22049 0.95839 0.89894 0.99395 1.21575 0.94467 0.99364 0.99817 1.21846 0.99760 0.97209 0.97466 1.21168 0.93674 0.93232 1.00427 0.91209 1.19229 0.90235 0.97027 0.94135 0.94248 1.20748 1.32550 0.96846 1.02967 0.91069 1.24973 0.95345 0.94594 0.97321 1.69909 1.39053 1.14897 1.30272 0.86923 0.77716 0.81680 0.83346 1.19974 1.22146 1.19490 1.22431 0.97376 0.92159 0.87049 1.86678 1.25346 1.81249 1.42672 1.22140 0.95952 0.98497 0.89068 0.96328 0.91208 0.92099 0.91703 0.95651 0.91358 0.92470 0.92112 0.92974 0.92908 0.96579 0.94959 0.80103 0.95936 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.62 60.07 0.58 0.99 16 2 N -0.55 -9.52 4.91 -242.95 -1.19 -10.71 16 3 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 4 C -0.11 -1.65 6.09 -26.65 -0.16 -1.81 16 5 C -0.13 -2.10 4.86 -26.61 -0.13 -2.23 16 6 C -0.07 -1.33 1.92 -90.53 -0.17 -1.50 16 7 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 8 C 0.01 0.31 1.60 -91.77 -0.15 0.17 16 9 H 0.04 0.98 4.71 -51.93 -0.24 0.74 16 10 C -0.49 -13.78 7.34 -34.44 -0.25 -14.03 16 11 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 12 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 13 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 14 Si 0.87 22.63 27.01 -169.99 -4.59 18.04 16 15 H -0.27 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 17 H -0.27 -6.63 6.17 56.52 0.35 -6.28 16 18 C 0.09 1.83 6.17 37.16 0.23 2.06 16 19 O -0.56 -12.18 13.36 -35.23 -0.47 -12.65 16 20 C 0.07 1.44 4.49 -3.83 -0.02 1.42 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.94 6.51 -51.93 -0.34 0.60 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.02 0.29 6.33 -51.93 -0.33 -0.04 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.36 5.60 9.12 45.56 0.42 6.01 16 34 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 35 H 0.09 2.18 7.15 -51.93 -0.37 1.81 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -31.87 271.70 -6.67 -38.54 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.09 Total: 1.87 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.19 Total: -11.91 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.42 Total: -37.98 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.47 Total: -12.65 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.59 Total: 18.04 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.87 -6.67 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.883 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds