Wall clock time and date at job start Mon Mar 30 2020 20:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46849 * 110.99404 * 2 1 4 4 C 1.53041 * 109.51928 * 174.15935 * 3 2 1 5 5 C 1.53120 * 109.27588 * 59.18317 * 4 3 2 6 6 C 1.53121 * 109.15765 * 302.34136 * 5 4 3 7 7 H 1.08995 * 109.50721 * 297.67291 * 6 5 4 8 8 C 1.53009 * 109.50259 * 177.59677 * 6 5 4 9 9 H 1.08995 * 109.46855 * 300.08002 * 8 6 5 10 10 C 1.50705 * 109.46957 * 180.02562 * 8 6 5 11 11 H 1.07995 * 119.99944 * 302.24847 * 10 8 6 12 12 C 1.37871 * 119.99626 * 122.25477 * 10 8 6 13 13 N 1.31513 * 119.99990 * 173.46967 * 12 10 8 14 14 Si 1.86804 * 120.00255 * 353.46244 * 12 10 8 15 15 H 1.48499 * 109.46822 * 84.90505 * 14 12 10 16 16 H 1.48504 * 109.46828 * 204.90229 * 14 12 10 17 17 H 1.48500 * 109.46867 * 324.90329 * 14 12 10 18 18 C 1.52997 * 109.46959 * 60.07907 * 8 6 5 19 19 O 1.42894 * 109.47088 * 183.15817 * 18 8 6 20 20 C 1.46847 * 110.99416 * 235.75235 * 2 1 3 21 21 H 1.08998 * 109.47346 * 56.04556 * 1 2 3 22 22 H 1.09006 * 109.46737 * 176.04901 * 1 2 3 23 23 H 1.09001 * 109.46979 * 296.04331 * 1 2 3 24 24 H 1.09005 * 109.46457 * 54.14909 * 3 2 1 25 25 H 1.08999 * 109.46597 * 294.17525 * 3 2 1 26 26 H 1.08996 * 109.50851 * 299.23735 * 4 3 2 27 27 H 1.09000 * 109.50102 * 179.11855 * 4 3 2 28 28 H 1.09003 * 109.52498 * 182.44285 * 5 4 3 29 29 H 1.09001 * 109.52874 * 62.24665 * 5 4 3 30 30 H 0.96998 * 120.00512 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47461 * 303.16058 * 18 8 6 32 32 H 1.09004 * 109.47101 * 63.15861 * 18 8 6 33 33 H 0.96710 * 114.00010 * 184.92920 * 19 18 8 34 34 H 1.08993 * 109.42727 * 65.80152 * 20 2 1 35 35 H 1.09000 * 109.49435 * 305.83091 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1468 5 6 4.1188 0.5372 -1.0144 6 6 3.5181 -0.8713 -1.0208 7 1 3.7820 -1.3837 -0.0957 8 6 4.0681 -1.6557 -2.2139 9 1 3.8039 -1.1429 -3.1387 10 6 3.4760 -3.0415 -2.2199 11 1 3.6042 -3.6872 -1.3637 12 6 2.7708 -3.4851 -3.3184 13 7 2.3647 -4.7345 -3.3785 14 14 2.3920 -2.3114 -4.7215 15 1 3.5459 -2.2676 -5.6553 16 1 1.1850 -2.7814 -5.4478 17 1 2.1442 -0.9524 -4.1767 18 6 5.5908 -1.7533 -2.1019 19 8 6.1112 -2.4216 -3.2527 20 6 1.9952 -0.7716 -1.1333 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0253 -0.0708 23 1 -0.3633 0.4512 0.9233 24 1 1.5633 1.9258 0.8330 25 1 1.7324 1.8609 -0.9376 26 1 3.7814 0.8569 1.0906 27 1 3.9098 2.3514 0.1310 28 1 5.1997 0.4716 -0.8906 29 1 3.8886 1.0356 -1.9561 30 1 1.8682 -5.0465 -4.1512 31 1 6.0156 -0.7513 -2.0405 32 1 5.8539 -2.3150 -1.2056 33 1 7.0634 -2.5863 -3.2149 34 1 1.7317 -0.2720 -2.0655 35 1 1.5639 -1.7726 -1.1233 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261333959.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:31 Heat of formation + Delta-G solvation = -85.641870 kcal Electronic energy + Delta-G solvation = -15305.280951 eV Core-core repulsion = 12915.535653 eV Total energy + Delta-G solvation = -2389.745298 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.22599 -37.84573 -35.60198 -34.33779 -32.85222 -29.67036 -27.84273 -26.53293 -24.05143 -23.49482 -21.25374 -20.58599 -19.03149 -18.09917 -16.56755 -16.35167 -16.10653 -15.51792 -15.27939 -15.05695 -14.78718 -14.34947 -13.88813 -13.68562 -13.42665 -13.05790 -12.99525 -12.73828 -12.41006 -12.22670 -11.96304 -11.69864 -11.60670 -11.24689 -10.99159 -10.85977 -10.59923 -10.39755 -9.22516 -8.23973 -6.21466 1.28904 1.34269 1.38747 2.37039 3.04380 3.14127 3.74243 3.98550 4.04914 4.10698 4.32170 4.45611 4.51236 4.54760 4.61872 4.68376 4.74870 4.78140 4.91228 4.98063 5.00363 5.08465 5.12117 5.17702 5.26601 5.38504 5.54518 5.65225 5.77677 6.16899 6.28812 6.34137 6.78819 7.22582 7.42109 8.94006 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.012944 C = 0.010138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.462028 B = 2162.728066 C = 2761.293531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.052 3.948 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.061 4.061 7 H 0.059 0.941 8 C 0.008 3.992 9 H 0.029 0.971 10 C -0.482 4.482 11 H 0.029 0.971 12 C 0.021 3.979 13 N -0.953 5.953 14 Si 0.931 3.069 15 H -0.276 1.276 16 H -0.293 1.293 17 H -0.251 1.251 18 C 0.090 3.910 19 O -0.588 6.588 20 C 0.079 3.921 21 H 0.023 0.977 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.382 0.618 34 H 0.009 0.991 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.113 14.566 5.698 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.081 4.081 7 H 0.077 0.923 8 C -0.012 4.012 9 H 0.047 0.953 10 C -0.520 4.520 11 H 0.048 0.952 12 C -0.175 4.175 13 N -0.595 5.595 14 Si 0.758 3.242 15 H -0.202 1.202 16 H -0.220 1.220 17 H -0.175 1.175 18 C 0.012 3.988 19 O -0.394 6.394 20 C -0.049 4.049 21 H 0.041 0.959 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.229 0.771 34 H 0.027 0.973 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.532 14.256 5.848 15.485 hybrid contribution -0.154 -0.085 -1.484 1.494 sum 1.378 14.171 4.364 14.892 Atomic orbital electron populations 1.22385 0.86887 1.01632 1.01386 1.61958 1.08241 1.14491 1.43378 1.22219 0.96515 0.88299 1.00524 1.21581 0.93812 1.00780 0.98538 1.21795 1.00713 0.94608 0.98687 1.21022 0.93541 0.95368 0.98131 0.92268 1.19310 0.92341 0.94369 0.95170 0.95281 1.20981 1.31511 0.98522 1.00982 0.95225 1.25709 0.95813 0.95884 1.00079 1.70050 1.41112 1.16951 1.31373 0.86008 0.77320 0.80631 0.80290 1.20161 1.21951 1.17487 1.22352 0.95324 0.94287 0.86804 1.86599 1.28026 1.81643 1.43152 1.21868 0.96261 0.96894 0.89835 0.95864 0.92558 0.89211 0.88941 0.95705 0.91215 0.89124 0.90348 0.93121 0.93039 0.92530 0.94898 0.77074 0.97320 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 9.62 127.69 1.23 1.95 16 2 N -0.56 -18.45 4.91 -922.56 -4.53 -22.98 16 3 C 0.05 1.37 5.46 86.33 0.47 1.84 16 4 C -0.11 -2.68 6.09 30.65 0.19 -2.49 16 5 C -0.12 -3.62 4.86 30.67 0.15 -3.47 16 6 C -0.06 -2.41 1.92 -10.74 -0.02 -2.43 16 7 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 8 C 0.01 0.35 1.60 -11.54 -0.02 0.33 16 9 H 0.03 1.41 4.71 -2.39 -0.01 1.40 16 10 C -0.48 -27.75 7.34 25.60 0.19 -27.56 16 11 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 12 C 0.02 1.28 5.47 84.65 0.46 1.74 16 13 N -0.95 -61.61 13.96 21.44 0.30 -61.32 16 14 Si 0.93 47.38 27.01 68.60 1.85 49.24 16 15 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 17 H -0.25 -11.83 6.17 99.48 0.61 -11.22 16 18 C 0.09 3.57 6.17 71.98 0.44 4.02 16 19 O -0.59 -24.79 13.36 -148.98 -1.99 -26.78 16 20 C 0.08 3.24 4.49 86.33 0.39 3.63 16 21 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.06 1.72 8.02 -2.38 -0.02 1.70 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.09 1.96 8.12 -2.38 -0.02 1.94 16 25 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.08 6.51 -2.39 -0.02 2.06 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.06 1.82 6.33 -2.39 -0.02 1.80 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.38 11.23 9.12 -74.05 -0.68 10.55 16 34 H 0.01 0.37 7.60 -2.39 -0.02 0.35 16 35 H 0.05 2.62 7.15 -2.39 -0.02 2.60 16 Total: -1.00 -70.89 271.70 -0.60 -71.49 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.29 Total: 12.81 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 3.48 Total: -22.45 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -4.23 Total: -84.30 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.99 Total: -26.78 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.85 Total: 49.24 kcal Total: -70.89 -0.60 -71.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333959.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.154 kcal (2) G-P(sol) polarization free energy of solvation -70.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds