Wall clock time and date at job start Mon Mar 30 2020 20:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46847 * 111.00332 * 2 1 4 4 C 1.53037 * 109.52425 * 185.83913 * 3 2 1 5 5 C 1.53111 * 109.27860 * 300.81788 * 4 3 2 6 6 C 1.53113 * 109.16211 * 57.65697 * 5 4 3 7 7 H 1.09000 * 109.53834 * 62.30113 * 6 5 4 8 8 C 1.53005 * 109.50590 * 182.40254 * 6 5 4 9 9 H 1.08998 * 109.47223 * 304.48211 * 8 6 5 10 10 C 1.50700 * 109.46980 * 64.48290 * 8 6 5 11 11 H 1.07998 * 119.99644 * 5.54152 * 10 8 6 12 12 C 1.37872 * 120.00058 * 185.54539 * 10 8 6 13 13 N 1.31510 * 120.00135 * 197.57691 * 12 10 8 14 14 Si 1.86804 * 119.99883 * 17.56907 * 12 10 8 15 15 H 1.48507 * 109.47007 * 180.02562 * 14 12 10 16 16 H 1.48508 * 109.46915 * 60.00543 * 14 12 10 17 17 H 1.48496 * 109.47603 * 300.00262 * 14 12 10 18 18 C 1.53000 * 109.46920 * 184.48173 * 8 6 5 19 19 O 1.42902 * 109.47266 * 62.50656 * 18 8 6 20 20 C 1.46855 * 110.99908 * 124.20857 * 2 1 3 21 21 H 1.09000 * 109.46963 * 295.79208 * 1 2 3 22 22 H 1.08999 * 109.47334 * 55.78808 * 1 2 3 23 23 H 1.09001 * 109.47272 * 175.79299 * 1 2 3 24 24 H 1.09003 * 109.46265 * 305.85484 * 3 2 1 25 25 H 1.09001 * 109.46229 * 65.82268 * 3 2 1 26 26 H 1.08995 * 109.50364 * 60.76166 * 4 3 2 27 27 H 1.09003 * 109.50056 * 180.83507 * 4 3 2 28 28 H 1.09002 * 109.52673 * 297.74642 * 5 4 3 29 29 H 1.09008 * 109.52399 * 177.56029 * 5 4 3 30 30 H 0.97000 * 119.99928 * 354.95198 * 13 12 10 31 31 H 1.09004 * 109.46854 * 182.50508 * 18 8 6 32 32 H 1.08998 * 109.47305 * 302.50323 * 18 8 6 33 33 H 0.96704 * 113.99757 * 179.97438 * 19 18 8 34 34 H 1.08997 * 109.46104 * 54.14476 * 20 2 1 35 35 H 1.08993 * 109.45237 * 294.16774 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1467 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7813 -1.3842 0.0957 8 6 4.0681 -1.6558 2.2139 9 1 5.1574 -1.6563 2.1775 10 6 3.6085 -1.0091 3.4952 11 1 2.9148 -0.1819 3.4639 12 6 4.0738 -1.4732 4.7072 13 7 3.4384 -1.1659 5.8168 14 14 5.6066 -2.5389 4.7731 15 1 5.8947 -2.9049 6.1833 16 1 6.7572 -1.7863 4.2116 17 1 5.3863 -3.7729 3.9770 18 6 3.5553 -3.0962 2.1572 19 8 4.0394 -3.7279 0.9704 20 6 1.9952 -0.7708 1.1338 21 1 -0.3633 0.4471 0.9253 22 1 -0.3634 0.5778 -0.8498 23 1 -0.3634 -1.0249 -0.0754 24 1 1.5635 1.9257 -0.8330 25 1 1.7325 1.8608 0.9376 26 1 3.7814 0.8567 -1.0906 27 1 3.9099 2.3512 -0.1318 28 1 3.8888 1.0355 1.9560 29 1 5.1998 0.4713 0.8905 30 1 2.6863 -0.5538 5.7914 31 1 3.9107 -3.6430 3.0307 32 1 2.4653 -3.0938 2.1489 33 1 3.7531 -4.6460 0.8686 34 1 1.5634 -1.7715 1.1243 35 1 1.7325 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261333967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:38 Heat of formation + Delta-G solvation = -63.341151 kcal Electronic energy + Delta-G solvation = -15366.957990 eV Core-core repulsion = 12978.179724 eV Total energy + Delta-G solvation = -2388.778266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.78778 -36.27396 -33.99382 -32.53298 -31.25075 -27.91717 -26.30665 -24.05657 -22.93098 -22.07991 -19.75281 -18.77253 -17.16722 -16.41812 -15.44891 -14.66850 -14.25831 -13.99929 -13.83669 -13.45646 -13.23826 -12.64007 -12.31339 -12.00145 -11.71902 -11.45124 -11.38681 -10.93077 -10.67602 -10.53629 -10.42946 -9.99782 -9.87256 -9.54454 -9.31152 -8.91386 -8.66109 -8.23769 -7.78399 -6.48201 -4.10491 3.37817 3.44278 3.61029 4.40604 4.45949 5.06305 5.31965 5.41055 5.47057 5.49458 5.67863 5.78564 5.90172 5.99506 6.04126 6.06784 6.17028 6.35765 6.39266 6.45232 6.55054 6.58545 6.67943 6.92323 6.94969 7.09430 7.24750 7.43493 7.55750 7.65226 8.14171 8.33486 8.44813 8.88192 9.57787 10.90263 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.010812 C = 0.010131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.012546 B = 2589.157488 C = 2763.169163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.548 5.548 3 C 0.059 3.941 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.057 4.057 7 H 0.061 0.939 8 C 0.029 3.971 9 H 0.028 0.972 10 C -0.592 4.592 11 H 0.063 0.937 12 C 0.029 3.971 13 N -0.905 5.905 14 Si 1.045 2.955 15 H -0.288 1.288 16 H -0.282 1.282 17 H -0.275 1.275 18 C 0.065 3.935 19 O -0.583 6.583 20 C 0.069 3.931 21 H 0.020 0.980 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.267 0.733 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.358 0.642 34 H 0.064 0.936 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 0.668 -9.747 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.069 4.069 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.076 4.076 7 H 0.079 0.921 8 C 0.009 3.991 9 H 0.046 0.954 10 C -0.630 4.630 11 H 0.081 0.919 12 C -0.176 4.176 13 N -0.539 5.539 14 Si 0.874 3.126 15 H -0.214 1.214 16 H -0.209 1.209 17 H -0.202 1.202 18 C -0.012 4.012 19 O -0.387 6.387 20 C -0.058 4.058 21 H 0.039 0.961 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.202 0.798 34 H 0.082 0.918 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.832 0.187 -9.207 9.246 hybrid contribution -1.666 0.728 -0.071 1.820 sum -2.498 0.916 -9.278 9.652 Atomic orbital electron populations 1.22288 0.88514 1.01640 0.99670 1.61997 1.06563 1.13420 1.45322 1.22020 0.96027 0.89453 0.99409 1.21608 0.94282 0.99592 0.99917 1.21574 0.99102 0.96327 0.97746 1.20881 0.92968 0.95039 0.98710 0.92089 1.19014 0.96091 0.89252 0.94759 0.95445 1.21954 1.30681 1.19823 0.90501 0.91908 1.25804 1.00814 0.98603 0.92377 1.70870 1.20846 1.32202 1.29964 0.84042 0.76265 0.76717 0.75624 1.21369 1.20864 1.20193 1.23202 0.96967 0.96165 0.84879 1.86521 1.77568 1.28888 1.45707 1.22189 0.96243 0.96960 0.90377 0.96140 0.92173 0.91799 0.91921 0.95363 0.91861 0.92466 0.91296 0.92755 0.92316 0.94064 0.94775 0.79805 0.91784 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.59 60.06 0.58 0.98 16 2 N -0.55 -9.66 4.91 -242.96 -1.19 -10.85 16 3 C 0.06 0.96 5.46 -3.83 -0.02 0.94 16 4 C -0.12 -1.90 6.09 -26.66 -0.16 -2.06 16 5 C -0.11 -2.16 5.13 -26.62 -0.14 -2.29 16 6 C -0.06 -1.21 2.05 -90.54 -0.19 -1.40 16 7 H 0.06 1.33 7.63 -51.93 -0.40 0.93 16 8 C 0.03 0.68 1.40 -91.77 -0.13 0.55 16 9 H 0.03 0.69 6.80 -51.93 -0.35 0.33 16 10 C -0.59 -15.86 7.35 -34.44 -0.25 -16.11 16 11 H 0.06 1.80 5.93 -52.49 -0.31 1.49 16 12 C 0.03 0.82 5.32 -17.82 -0.09 0.73 16 13 N -0.90 -27.10 13.70 55.43 0.76 -26.34 16 14 Si 1.04 25.19 26.33 -169.99 -4.48 20.72 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.24 5.66 56.52 0.32 -5.92 16 18 C 0.06 1.44 5.95 37.16 0.22 1.66 16 19 O -0.58 -11.59 13.01 -35.23 -0.46 -12.04 16 20 C 0.07 1.40 4.18 -3.83 -0.02 1.38 16 21 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.49 6.98 -51.93 -0.36 1.13 16 29 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.27 7.96 8.73 -40.82 -0.36 7.61 16 31 H 0.04 0.95 4.81 -51.93 -0.25 0.70 16 32 H 0.03 0.74 6.46 -51.93 -0.34 0.41 16 33 H 0.36 5.25 9.12 45.56 0.42 5.66 16 34 H 0.06 1.31 6.53 -51.93 -0.34 0.98 16 35 H 0.05 1.02 6.22 -51.93 -0.32 0.70 16 LS Contribution 264.58 15.07 3.99 3.99 Total: -1.00 -29.65 264.58 -6.45 -36.09 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.86 Total: 4.06 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.20 Total: -15.62 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.43 Total: -37.19 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.46 Total: -12.04 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.48 Total: 20.72 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.65 -6.45 -36.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261333967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.248 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds