Wall clock time and date at job start Mon Mar 30 2020 20:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47329 * 2 1 4 4 C 1.50698 * 109.46957 * 240.00091 * 2 1 3 5 5 H 1.07996 * 120.00295 * 274.99734 * 4 2 1 6 6 C 1.37884 * 120.00101 * 95.00090 * 4 2 1 7 7 N 1.31509 * 120.00093 * 184.91640 * 6 4 2 8 8 Si 1.86799 * 119.99817 * 4.90918 * 6 4 2 9 9 H 1.48496 * 109.47094 * 84.83377 * 8 6 4 10 10 H 1.48507 * 109.47082 * 204.83515 * 8 6 4 11 11 H 1.48497 * 109.47401 * 324.83391 * 8 6 4 12 12 N 1.46895 * 109.47034 * 120.00059 * 2 1 3 13 13 C 1.46898 * 111.00053 * 274.99656 * 12 2 1 14 14 C 1.52999 * 109.46865 * 180.02562 * 13 12 2 15 15 H 1.09004 * 110.67625 * 51.76951 * 14 13 12 16 16 C 1.54888 * 110.75814 * 288.33003 * 14 13 12 17 17 C 1.54271 * 104.19461 * 203.74621 * 16 14 13 18 18 C 1.53865 * 106.60235 * 23.60760 * 17 16 14 19 19 H 1.08997 * 110.03968 * 240.71805 * 18 17 16 20 20 O 1.42901 * 110.03074 * 119.28298 * 18 17 16 21 21 C 1.54266 * 106.59754 * 0.02562 * 18 17 16 22 22 H 1.09002 * 109.47088 * 55.04057 * 1 2 3 23 23 H 1.08996 * 109.47249 * 175.04396 * 1 2 3 24 24 H 1.09001 * 109.46975 * 295.04470 * 1 2 3 25 25 H 0.96998 * 120.00068 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00080 * 38.95703 * 12 2 1 27 27 H 1.09000 * 109.47503 * 300.00051 * 13 12 2 28 28 H 1.09002 * 109.46690 * 60.00561 * 13 12 2 29 29 H 1.09003 * 110.48807 * 322.41919 * 16 14 13 30 30 H 1.08999 * 110.48655 * 85.06614 * 16 14 13 31 31 H 1.09000 * 110.02752 * 264.32293 * 17 16 14 32 32 H 1.09003 * 110.07313 * 142.91828 * 17 16 14 33 33 H 0.96700 * 113.99847 * 62.84061 * 20 18 17 34 34 H 1.09000 * 110.48631 * 217.70779 * 21 18 17 35 35 H 1.09005 * 110.60272 * 95.12328 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6131 -3.4623 8 14 2.3134 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1056 2.3991 -3.6929 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5963 -0.5330 3.5741 15 1 3.5241 -1.0565 3.3432 16 6 1.5229 -1.5169 4.1020 17 6 1.8922 -1.7188 5.5862 18 6 2.6999 -0.4800 6.0108 19 1 3.6983 -0.7770 6.3318 20 8 2.0274 0.2032 7.0705 21 6 2.7928 0.4319 4.7700 22 1 -0.3633 0.5889 -0.8422 23 1 -0.3633 -1.0238 -0.0888 24 1 -0.3633 0.4350 0.9311 25 1 2.9362 -0.1048 -4.2556 26 1 1.4496 -1.4979 1.4099 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6162 2.5525 29 1 0.5281 -1.0804 4.0124 30 1 1.5752 -2.4633 3.5637 31 1 2.4985 -2.6173 5.7011 32 1 0.9877 -1.7995 6.1891 33 1 1.9370 -0.3184 7.8797 34 1 3.7721 0.9078 4.7188 35 1 2.0045 1.1846 4.7872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300367042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:41 Heat of formation + Delta-G solvation = -70.908440 kcal Electronic energy + Delta-G solvation = -14484.246792 eV Core-core repulsion = 12095.140383 eV Total energy + Delta-G solvation = -2389.106408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -38.97298 -36.46819 -34.83488 -32.27309 -30.26256 -28.61420 -26.99412 -25.18352 -23.23771 -20.61213 -19.95565 -19.74304 -17.25213 -16.83851 -15.98800 -15.18018 -14.46874 -14.34042 -13.71663 -13.21843 -12.90447 -12.70702 -12.40530 -12.23320 -12.15482 -11.66947 -11.36572 -11.05143 -10.95495 -10.71899 -10.58929 -10.39630 -10.31782 -10.04768 -9.90414 -9.68774 -9.10875 -8.48529 -7.31600 -6.02167 -3.98907 3.31216 3.38876 3.39370 4.09241 4.45319 4.57856 4.61179 4.93988 5.03242 5.32112 5.40166 5.42523 5.61348 5.62137 5.73364 5.80374 5.91867 6.04070 6.11591 6.15979 6.20808 6.28336 6.37475 6.48639 6.60106 6.64869 6.87244 7.16895 7.53275 7.75133 8.02003 8.43902 8.71580 9.05717 9.61071 11.11643 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054249 B = 0.006295 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.014576 B = 4446.603373 C = 4600.150928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.178 3.822 3 H 0.035 0.965 4 C -0.490 4.490 5 H 0.076 0.924 6 C 0.069 3.931 7 N -0.902 5.902 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.674 5.674 13 C 0.064 3.936 14 C -0.088 4.088 15 H 0.087 0.913 16 C -0.118 4.118 17 C -0.156 4.156 18 C 0.098 3.902 19 H 0.056 0.944 20 O -0.569 6.569 21 C -0.113 4.113 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.020 0.980 25 H 0.263 0.737 26 H 0.327 0.673 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.373 0.627 34 H 0.070 0.930 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 0.333 17.915 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.094 0.906 6 C -0.132 4.132 7 N -0.541 5.541 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.194 1.194 12 N -0.304 5.304 13 C -0.066 4.066 14 C -0.106 4.106 15 H 0.105 0.895 16 C -0.156 4.156 17 C -0.194 4.194 18 C 0.040 3.960 19 H 0.074 0.926 20 O -0.374 6.374 21 C -0.151 4.151 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.220 0.780 34 H 0.089 0.911 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.869 0.924 17.092 17.139 hybrid contribution -0.924 0.633 0.510 1.231 sum -1.794 1.557 17.602 17.761 Atomic orbital electron populations 1.22640 1.01084 1.00693 0.98581 1.19660 0.89342 0.94687 0.89312 0.94657 1.20877 1.42513 0.95680 0.93828 0.90635 1.24976 0.94825 0.98003 0.95409 1.69891 1.46905 1.35599 1.01684 0.86902 0.78908 0.86871 0.76962 1.20182 1.21565 1.19379 1.60908 1.57832 1.08878 1.02777 1.21944 0.98185 0.95863 0.90597 1.22158 0.99346 0.95696 0.93450 0.89459 1.22372 0.98990 0.99993 0.94227 1.22888 1.00305 0.98143 0.98041 1.22532 0.93919 0.91862 0.87710 0.92579 1.86560 1.80650 1.45242 1.24951 1.22395 1.02489 0.98065 0.92150 0.93302 0.93301 0.96147 0.92726 0.85633 0.91775 0.96326 0.91744 0.91110 0.91512 0.91296 0.78042 0.91127 0.90556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 9.16 37.16 0.34 -3.31 16 2 C 0.18 4.25 2.23 -68.87 -0.15 4.10 16 3 H 0.04 0.87 4.95 -51.93 -0.26 0.61 16 4 C -0.49 -13.93 9.19 -34.44 -0.32 -14.25 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 8 Si 0.88 21.88 26.99 -169.99 -4.59 17.30 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.43 6.82 56.52 0.39 -6.04 16 12 N -0.67 -13.90 6.23 -107.95 -0.67 -14.58 16 13 C 0.06 1.10 4.97 -3.83 -0.02 1.08 16 14 C -0.09 -1.23 3.12 -88.61 -0.28 -1.50 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.12 -1.48 5.70 -25.07 -0.14 -1.62 16 17 C -0.16 -1.62 6.61 -25.62 -0.17 -1.79 16 18 C 0.10 1.07 4.26 -25.62 -0.11 0.96 16 19 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 20 O -0.57 -6.24 13.22 -35.23 -0.47 -6.71 16 21 C -0.11 -1.43 6.00 -25.06 -0.15 -1.58 16 22 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.02 0.38 7.35 -51.93 -0.38 0.00 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.33 6.29 7.87 -39.29 -0.31 5.98 16 27 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 28 H 0.02 0.32 7.21 -51.93 -0.37 -0.06 16 29 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.67 7.95 -51.93 -0.41 0.25 16 33 H 0.37 2.38 9.11 45.56 0.42 2.80 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 LS Contribution 279.87 15.07 4.22 4.22 Total: -1.00 -31.29 279.87 -6.92 -38.22 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.10 Total: 4.63 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.09 Total: -15.99 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.10 Total: -41.66 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.47 Total: -6.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.59 Total: 17.30 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.29 -6.92 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300367042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.693 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds