Wall clock time and date at job start Mon Mar 30 2020 20:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47329 * 2 1 4 4 C 1.50698 * 109.46957 * 240.00091 * 2 1 3 5 5 H 1.07996 * 120.00295 * 274.99734 * 4 2 1 6 6 C 1.37884 * 120.00101 * 95.00090 * 4 2 1 7 7 N 1.31509 * 120.00093 * 184.91640 * 6 4 2 8 8 Si 1.86799 * 119.99817 * 4.90918 * 6 4 2 9 9 H 1.48496 * 109.47094 * 84.83377 * 8 6 4 10 10 H 1.48507 * 109.47082 * 204.83515 * 8 6 4 11 11 H 1.48497 * 109.47401 * 324.83391 * 8 6 4 12 12 N 1.46895 * 109.47034 * 120.00059 * 2 1 3 13 13 C 1.46898 * 111.00053 * 274.99656 * 12 2 1 14 14 C 1.52999 * 109.46865 * 180.02562 * 13 12 2 15 15 H 1.09004 * 110.67625 * 51.76951 * 14 13 12 16 16 C 1.54888 * 110.75814 * 288.33003 * 14 13 12 17 17 C 1.54271 * 104.19461 * 203.74621 * 16 14 13 18 18 C 1.53865 * 106.60235 * 23.60760 * 17 16 14 19 19 H 1.08997 * 110.03968 * 240.71805 * 18 17 16 20 20 O 1.42901 * 110.03074 * 119.28298 * 18 17 16 21 21 C 1.54266 * 106.59754 * 0.02562 * 18 17 16 22 22 H 1.09002 * 109.47088 * 55.04057 * 1 2 3 23 23 H 1.08996 * 109.47249 * 175.04396 * 1 2 3 24 24 H 1.09001 * 109.46975 * 295.04470 * 1 2 3 25 25 H 0.96998 * 120.00068 * 179.97438 * 7 6 4 26 26 H 1.00894 * 111.00080 * 38.95703 * 12 2 1 27 27 H 1.09000 * 109.47503 * 300.00051 * 13 12 2 28 28 H 1.09002 * 109.46690 * 60.00561 * 13 12 2 29 29 H 1.09003 * 110.48807 * 322.41919 * 16 14 13 30 30 H 1.08999 * 110.48655 * 85.06614 * 16 14 13 31 31 H 1.09000 * 110.02752 * 264.32293 * 17 16 14 32 32 H 1.09003 * 110.07313 * 142.91828 * 17 16 14 33 33 H 0.96700 * 113.99847 * 62.84061 * 20 18 17 34 34 H 1.09000 * 110.48631 * 217.70779 * 21 18 17 35 35 H 1.09005 * 110.60272 * 95.12328 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1355 -1.7854 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6131 -3.4623 8 14 2.3134 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7822 10 1 2.1056 2.3991 -3.6929 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3468 14 6 2.5963 -0.5330 3.5741 15 1 3.5241 -1.0565 3.3432 16 6 1.5229 -1.5169 4.1020 17 6 1.8922 -1.7188 5.5862 18 6 2.6999 -0.4800 6.0108 19 1 3.6983 -0.7770 6.3318 20 8 2.0274 0.2032 7.0705 21 6 2.7928 0.4319 4.7700 22 1 -0.3633 0.5889 -0.8422 23 1 -0.3633 -1.0238 -0.0888 24 1 -0.3633 0.4350 0.9311 25 1 2.9362 -0.1048 -4.2556 26 1 1.4496 -1.4979 1.4099 27 1 2.7589 1.0462 2.1182 28 1 1.0871 0.6162 2.5525 29 1 0.5281 -1.0804 4.0124 30 1 1.5752 -2.4633 3.5637 31 1 2.4985 -2.6173 5.7011 32 1 0.9877 -1.7995 6.1891 33 1 1.9370 -0.3184 7.8797 34 1 3.7721 0.9078 4.7188 35 1 2.0045 1.1846 4.7872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300367042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:40 Heat of formation + Delta-G solvation = -94.991488 kcal Electronic energy + Delta-G solvation = -14485.291111 eV Core-core repulsion = 12095.140383 eV Total energy + Delta-G solvation = -2390.150728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.96259 -37.91086 -36.05033 -34.29544 -31.77558 -29.68402 -28.22256 -27.23774 -24.55032 -22.01212 -21.19160 -21.00328 -19.07816 -17.94652 -17.02272 -16.71038 -16.14322 -15.54419 -15.37600 -14.59064 -14.32653 -14.11512 -13.96961 -13.75216 -13.30466 -12.99464 -12.91592 -12.70450 -12.51031 -12.17318 -11.82291 -11.74926 -11.56449 -11.46340 -11.32064 -11.12711 -10.79694 -10.67078 -8.97193 -8.25842 -6.27351 1.34058 1.35185 1.44832 2.35338 3.03641 3.26386 3.65232 3.67670 3.77117 4.08430 4.33689 4.40153 4.47065 4.53880 4.57730 4.66283 4.73425 4.73649 4.80242 4.90998 4.98372 5.04054 5.10398 5.15420 5.22053 5.38123 5.42021 5.52041 5.69325 6.08419 6.68850 6.78062 6.82414 6.95581 7.36670 8.91749 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.054249 B = 0.006295 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.014576 B = 4446.603373 C = 4600.150928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.032 0.968 4 C -0.496 4.496 5 H 0.032 0.968 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.941 3.059 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.248 1.248 12 N -0.686 5.686 13 C 0.066 3.934 14 C -0.083 4.083 15 H 0.080 0.920 16 C -0.119 4.119 17 C -0.149 4.149 18 C 0.102 3.898 19 H 0.072 0.928 20 O -0.585 6.585 21 C -0.113 4.113 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.265 0.735 26 H 0.334 0.666 27 H 0.055 0.945 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.393 0.607 34 H 0.074 0.926 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 1.392 20.143 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.071 3.929 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.051 0.949 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.766 3.234 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.172 1.172 12 N -0.317 5.317 13 C -0.063 4.063 14 C -0.102 4.102 15 H 0.099 0.901 16 C -0.156 4.156 17 C -0.186 4.186 18 C 0.043 3.957 19 H 0.090 0.910 20 O -0.394 6.394 21 C -0.151 4.151 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.152 0.848 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.243 0.757 34 H 0.093 0.907 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.361 1.970 19.366 19.514 hybrid contribution -0.769 0.207 -0.132 0.807 sum -2.130 2.177 19.234 19.474 Atomic orbital electron populations 1.22483 0.99021 1.00951 0.99818 1.19499 0.90767 0.93905 0.88749 0.94956 1.21163 1.42143 0.94066 0.96066 0.94919 1.25837 0.94667 1.03323 0.94882 1.70045 1.48833 1.37744 1.02620 0.85839 0.79697 0.80434 0.77445 1.19605 1.21183 1.17193 1.60676 1.58067 1.09698 1.03212 1.21982 0.98492 0.95374 0.90471 1.22046 0.99386 0.96114 0.92647 0.90133 1.22361 0.98128 0.99275 0.95874 1.22849 1.00972 0.98539 0.96280 1.22464 0.94856 0.91243 0.87142 0.91012 1.86506 1.80673 1.46217 1.25979 1.22363 1.02387 0.97839 0.92519 0.94007 0.93303 0.93188 0.92628 0.84837 0.92692 0.95666 0.92275 0.91404 0.90118 0.90299 0.75702 0.90683 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.71 9.16 71.98 0.66 -6.05 16 2 C 0.18 8.43 2.23 44.17 0.10 8.52 16 3 H 0.03 1.54 4.95 -2.39 -0.01 1.53 16 4 C -0.50 -28.69 9.19 25.60 0.24 -28.45 16 5 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 6 C 0.01 0.56 5.47 84.66 0.46 1.03 16 7 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 8 Si 0.94 44.96 26.99 68.60 1.85 46.81 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.25 -10.93 6.82 99.48 0.68 -10.25 16 12 N -0.69 -27.81 6.23 -495.46 -3.09 -30.90 16 13 C 0.07 2.18 4.97 86.30 0.43 2.61 16 14 C -0.08 -2.19 3.12 -9.49 -0.03 -2.22 16 15 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 16 C -0.12 -2.73 5.70 31.67 0.18 -2.55 16 17 C -0.15 -2.64 6.61 31.32 0.21 -2.43 16 18 C 0.10 1.92 4.26 31.31 0.13 2.05 16 19 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 20 O -0.59 -11.11 13.22 -148.98 -1.97 -13.08 16 21 C -0.11 -2.62 6.00 31.68 0.19 -2.43 16 22 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.05 1.75 7.35 -2.39 -0.02 1.73 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.33 12.65 7.87 -89.70 -0.71 11.94 16 27 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 28 H 0.03 0.80 7.21 -2.39 -0.02 0.79 16 29 H 0.06 1.42 7.94 -2.39 -0.02 1.40 16 30 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.27 7.95 -2.39 -0.02 1.25 16 33 H 0.39 3.75 9.11 -74.06 -0.67 3.08 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.67 7.99 -2.38 -0.02 1.65 16 Total: -1.00 -67.52 279.87 -0.68 -68.20 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.34 Total: 18.87 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 2.57 Total: -29.92 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.79 Total: -90.88 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.97 Total: -13.08 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.85 Total: 46.81 kcal Total: -67.52 -0.68 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300367042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.793 kcal (2) G-P(sol) polarization free energy of solvation -67.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds