Wall clock time and date at job start Mon Mar 30 2020 20:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99942 * 2 1 4 4 H 1.09006 * 109.47256 * 30.00522 * 3 2 1 5 5 C 1.52999 * 109.47359 * 270.00118 * 3 2 1 6 6 C 1.52995 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47225 * 60.00418 * 6 5 3 8 8 C 1.52999 * 109.46786 * 299.99717 * 7 6 5 9 9 C 1.52998 * 109.46898 * 150.00019 * 3 2 1 10 10 H 1.09002 * 109.47457 * 60.00320 * 9 3 2 11 11 N 1.46501 * 109.47556 * 299.99993 * 9 3 2 12 12 C 1.46505 * 120.00055 * 300.00469 * 11 9 3 13 13 C 1.36937 * 120.00021 * 119.99930 * 11 9 3 14 14 H 1.07997 * 120.00016 * 343.22113 * 13 11 9 15 15 C 1.38812 * 119.99817 * 163.49948 * 13 11 9 16 16 N 1.31614 * 120.00059 * 343.59315 * 15 13 11 17 17 Si 1.86803 * 119.99976 * 163.59831 * 15 13 11 18 18 H 1.48510 * 109.46941 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47256 * 119.99637 * 17 15 13 20 20 H 1.48504 * 109.46921 * 239.99906 * 17 15 13 21 21 H 1.08999 * 109.46987 * 299.99666 * 1 2 3 22 22 H 1.08997 * 109.47404 * 59.99433 * 1 2 3 23 23 H 1.08996 * 109.47001 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46835 * 59.99892 * 5 3 2 25 25 H 1.08997 * 109.47128 * 300.00174 * 5 3 2 26 26 H 1.08997 * 109.47547 * 300.00198 * 6 5 3 27 27 H 1.09003 * 109.46779 * 180.02562 * 6 5 3 28 28 H 1.08991 * 109.47154 * 179.97438 * 7 6 5 29 29 H 1.08997 * 109.47038 * 59.99468 * 7 6 5 30 30 H 1.08997 * 109.47128 * 299.99696 * 8 7 6 31 31 H 1.09003 * 109.47258 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46494 * 264.81764 * 12 11 9 33 33 H 1.09001 * 109.47090 * 24.81670 * 12 11 9 34 34 H 1.08997 * 109.46913 * 144.81450 * 12 11 9 35 35 H 0.96999 * 120.00310 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 2.8393 3.1694 -1.4424 7 6 4.1880 3.1278 -0.7210 8 6 3.9806 2.6618 0.7215 9 6 3.3588 1.2632 0.7212 10 1 4.0242 0.5694 0.2074 11 7 3.1603 0.8171 2.1025 12 6 2.3005 1.5873 3.0046 13 6 3.7784 -0.3198 2.5503 14 1 4.1825 -1.0290 1.8432 15 6 3.8802 -0.5636 3.9130 16 7 3.6867 0.4140 4.7727 17 14 4.2921 -2.2792 4.5268 18 1 4.4603 -3.1924 3.3678 19 1 5.5530 -2.2352 5.3099 20 1 3.1899 -2.7738 5.3904 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.2568 1.8015 -1.9563 25 1 2.8828 1.0776 -1.9563 26 1 2.1738 3.8631 -0.9286 27 1 2.9867 3.5015 -2.4701 28 1 4.6311 4.1236 -0.7213 29 1 4.8535 2.4341 -1.2347 30 1 3.3150 3.3555 1.2352 31 1 4.9414 2.6317 1.2353 32 1 2.9116 2.2728 3.5918 33 1 1.5768 2.1554 2.4200 34 1 1.7733 0.9067 3.6732 35 1 3.7582 0.2438 5.7250 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306152740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:40:57 Heat of formation + Delta-G solvation = -34.548665 kcal Electronic energy + Delta-G solvation = -15437.653047 eV Core-core repulsion = 13050.123317 eV Total energy + Delta-G solvation = -2387.529730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85658 -35.93092 -34.64605 -31.22400 -29.60438 -28.21272 -25.94062 -25.81634 -23.06175 -21.74133 -20.58914 -18.92318 -16.62501 -16.03417 -15.33467 -14.61761 -14.58706 -13.90001 -13.64304 -13.20615 -12.93629 -12.53188 -12.43122 -12.11307 -11.46771 -11.17390 -10.88207 -10.82135 -10.63229 -10.59338 -10.42325 -10.19726 -10.09228 -10.00661 -9.65163 -9.46272 -8.86623 -8.37308 -6.66887 -5.59317 -2.96770 3.46693 3.53900 3.57257 4.36500 4.60264 5.11840 5.15570 5.34948 5.54681 5.57675 5.66144 5.71962 5.82750 5.83867 5.89838 5.98770 6.02705 6.10416 6.15268 6.39373 6.41352 6.50573 6.57456 6.61953 6.81864 6.97237 7.04776 7.51111 7.80499 7.91506 7.95548 8.50689 9.37382 10.01944 10.48738 11.46878 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034130 B = 0.010453 C = 0.009170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.191267 B = 2678.015114 C = 3052.561180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.076 3.924 4 H 0.052 0.948 5 C -0.139 4.139 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.128 4.128 9 C 0.183 3.817 10 H 0.067 0.933 11 N -0.590 5.590 12 C 0.167 3.833 13 C -0.233 4.233 14 H 0.069 0.931 15 C -0.008 4.008 16 N -0.914 5.914 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.293 1.293 20 H -0.292 1.292 21 H 0.036 0.964 22 H 0.027 0.973 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.026 0.974 33 H -0.009 1.009 34 H 0.045 0.955 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.907 4.613 -10.590 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.283 6.283 3 C 0.016 3.984 4 H 0.070 0.930 5 C -0.177 4.177 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.168 4.168 9 C 0.074 3.926 10 H 0.085 0.915 11 N -0.311 5.311 12 C 0.023 3.977 13 C -0.363 4.363 14 H 0.087 0.913 15 C -0.204 4.204 16 N -0.561 5.561 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.219 1.219 21 H 0.054 0.946 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.010 0.990 34 H 0.064 0.936 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.792 4.408 -10.378 11.896 hybrid contribution -0.113 -0.630 0.472 0.795 sum -3.905 3.778 -9.906 11.298 Atomic orbital electron populations 1.22631 0.82994 1.01701 0.98761 1.87998 1.17875 1.27689 1.94691 1.22824 0.97668 0.84192 0.93750 0.93011 1.22042 1.00445 0.96955 0.98258 1.21467 0.97239 0.96597 0.99799 1.21573 0.96623 1.00585 0.96915 1.22081 1.01669 0.98215 0.94820 1.20360 0.91958 0.93679 0.86578 0.91450 1.43862 1.53146 1.27822 1.06224 1.20734 0.91338 0.94514 0.91147 1.19296 1.30721 0.95767 0.90502 0.91268 1.24830 1.01822 0.97477 0.96277 1.70122 1.55644 1.29302 1.01019 0.86221 0.77288 0.84822 0.78521 1.20415 1.22075 1.21880 0.94555 0.95449 0.90538 0.92844 0.91460 0.92357 0.92452 0.92621 0.92162 0.92617 0.91407 0.95614 0.99039 0.93619 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.82 101.05 1.09 1.67 16 2 O -0.36 -7.39 10.21 -35.23 -0.36 -7.75 16 3 C 0.08 1.41 1.93 -26.73 -0.05 1.36 16 4 H 0.05 0.98 6.31 -51.93 -0.33 0.65 16 5 C -0.14 -2.08 5.54 -26.73 -0.15 -2.22 16 6 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 7 C -0.12 -1.72 5.92 -26.73 -0.16 -1.88 16 8 C -0.13 -2.37 5.21 -26.70 -0.14 -2.51 16 9 C 0.18 3.90 2.28 -67.90 -0.15 3.75 16 10 H 0.07 1.50 7.83 -51.93 -0.41 1.10 16 11 N -0.59 -15.25 2.69 -173.45 -0.47 -15.72 16 12 C 0.17 4.26 8.00 59.85 0.48 4.74 16 13 C -0.23 -6.67 9.66 -15.06 -0.15 -6.81 16 14 H 0.07 1.97 7.78 -52.49 -0.41 1.57 16 15 C -0.01 -0.22 5.05 -17.43 -0.09 -0.31 16 16 N -0.91 -27.39 10.53 55.49 0.58 -26.80 16 17 Si 0.90 22.77 29.58 -169.99 -5.03 17.74 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 21 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 22 H 0.03 0.37 7.87 -51.93 -0.41 -0.04 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.03 0.70 7.50 -51.93 -0.39 0.31 16 33 H -0.01 -0.20 6.44 -51.93 -0.33 -0.53 16 34 H 0.05 1.27 6.99 -51.93 -0.36 0.91 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 274.30 15.07 4.13 4.13 Total: -1.00 -30.76 274.30 -6.57 -37.33 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.96 Total: -5.07 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 0.53 Total: -3.86 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.12 Total: -42.52 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.36 Total: -7.75 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.76 -6.57 -37.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306152740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.776 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds