Wall clock time and date at job start Mon Mar 30 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99571 * 2 1 4 4 H 1.08996 * 109.47373 * 330.00292 * 3 2 1 5 5 C 1.52998 * 109.47074 * 90.00329 * 3 2 1 6 6 C 1.53005 * 109.47561 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.46985 * 300.00109 * 6 5 3 8 8 C 1.53002 * 109.47398 * 59.99635 * 7 6 5 9 9 C 1.53000 * 109.46920 * 299.99880 * 8 7 6 10 10 H 1.08996 * 109.47496 * 299.99863 * 9 8 7 11 11 N 1.46502 * 109.47171 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00294 * 300.01017 * 11 9 8 13 13 C 1.36936 * 119.99783 * 119.99880 * 11 9 8 14 14 H 1.08006 * 120.00035 * 23.17763 * 13 11 9 15 15 C 1.38813 * 120.00269 * 203.16776 * 13 11 9 16 16 N 1.31619 * 119.99791 * 11.69058 * 15 13 11 17 17 Si 1.86797 * 120.00186 * 191.68121 * 15 13 11 18 18 H 1.48507 * 109.47309 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47187 * 120.00267 * 17 15 13 20 20 H 1.48501 * 109.47292 * 240.00524 * 17 15 13 21 21 H 1.09002 * 109.47380 * 59.99811 * 1 2 3 22 22 H 1.08999 * 109.46717 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47361 * 299.99557 * 1 2 3 24 24 H 1.09006 * 109.47132 * 299.99729 * 5 3 2 25 25 H 1.08993 * 109.47763 * 59.99585 * 5 3 2 26 26 H 1.08992 * 109.47484 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.46622 * 59.99478 * 6 5 3 28 28 H 1.09006 * 109.46912 * 299.99739 * 7 6 5 29 29 H 1.08996 * 109.47583 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47423 * 180.02562 * 8 7 6 31 31 H 1.08995 * 109.47371 * 59.99803 * 8 7 6 32 32 H 1.08997 * 109.47347 * 93.93280 * 12 11 9 33 33 H 1.09006 * 109.46866 * 213.93702 * 12 11 9 34 34 H 1.08997 * 109.46842 * 333.92928 * 12 11 9 35 35 H 0.97005 * 119.99946 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 2.8404 3.1690 1.4426 7 6 4.1890 3.1263 0.7215 8 6 3.9817 2.6604 -0.7210 9 6 3.3589 1.2629 -0.7210 10 1 4.0238 0.5688 -0.2071 11 7 3.1598 0.8170 -2.1023 12 6 2.3001 1.5877 -3.0041 13 6 3.7773 -0.3200 -2.5504 14 1 4.0893 -1.0781 -1.8472 15 6 4.0023 -0.4985 -3.9085 16 7 3.8375 0.5078 -4.7407 17 14 4.5391 -2.1668 -4.5551 18 1 4.6511 -3.1232 -3.4246 19 1 3.5352 -2.6669 -5.5283 20 1 5.8573 -2.0368 -5.2264 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.2567 1.8014 1.9564 25 1 2.8828 1.0776 1.9564 26 1 2.9877 3.5010 2.4702 27 1 2.1754 3.8631 0.9286 28 1 4.8540 2.4321 1.2355 29 1 4.6326 4.1219 0.7212 30 1 4.9425 2.6296 -1.2346 31 1 3.3167 3.3545 -1.2350 32 1 2.9086 2.2885 -3.5755 33 1 1.7892 0.9090 -3.6873 34 1 1.5627 2.1387 -2.4204 35 1 3.9943 0.3830 -5.6898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306152742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:01 Heat of formation + Delta-G solvation = -36.395689 kcal Electronic energy + Delta-G solvation = -15433.360319 eV Core-core repulsion = 13045.750496 eV Total energy + Delta-G solvation = -2387.609823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84739 -35.92478 -34.62010 -31.21877 -29.59632 -28.22248 -25.92626 -25.80916 -23.05871 -21.73133 -20.58505 -18.91278 -16.61530 -16.03012 -15.31581 -14.61925 -14.59342 -13.90177 -13.63686 -13.19863 -12.92661 -12.52291 -12.43136 -12.10780 -11.46576 -11.16642 -10.87639 -10.80638 -10.63270 -10.58939 -10.43193 -10.19216 -10.07735 -10.00916 -9.67449 -9.44415 -8.86871 -8.39390 -6.59325 -5.59249 -3.03101 3.45675 3.52666 3.55981 4.36857 4.59432 5.12698 5.16384 5.36026 5.55713 5.58002 5.66025 5.73382 5.83346 5.84357 5.90752 5.99631 6.03333 6.10605 6.16246 6.40556 6.42822 6.51686 6.58886 6.63630 6.83163 6.99698 7.06781 7.47876 7.81765 7.91871 7.95496 8.54198 9.37860 10.01088 10.50661 11.46260 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.010421 C = 0.009146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.641328 B = 2686.167203 C = 3060.688375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.076 3.924 4 H 0.052 0.948 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.127 4.127 9 C 0.183 3.817 10 H 0.067 0.933 11 N -0.588 5.588 12 C 0.167 3.833 13 C -0.236 4.236 14 H 0.067 0.933 15 C -0.004 4.004 16 N -0.913 5.913 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.292 1.292 20 H -0.292 1.292 21 H 0.036 0.964 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.027 0.973 33 H 0.041 0.959 34 H -0.009 1.009 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 4.408 10.435 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.283 6.283 3 C 0.016 3.984 4 H 0.070 0.930 5 C -0.177 4.177 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.167 4.167 9 C 0.074 3.926 10 H 0.085 0.915 11 N -0.309 5.309 12 C 0.022 3.978 13 C -0.366 4.366 14 H 0.085 0.915 15 C -0.201 4.201 16 N -0.560 5.560 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.220 1.220 21 H 0.054 0.946 22 H 0.095 0.905 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.009 0.991 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.964 4.213 10.220 11.744 hybrid contribution -0.036 -0.592 -0.497 0.774 sum -4.000 3.620 9.723 11.120 Atomic orbital electron populations 1.22631 0.83008 1.01687 0.98764 1.87995 1.17868 1.27735 1.94695 1.22821 0.97698 0.84155 0.93757 0.93017 1.22043 1.00421 0.96972 0.98260 1.21465 0.97248 0.96591 0.99789 1.21577 0.96603 1.00574 0.96959 1.22063 1.01693 0.98208 0.94757 1.20371 0.91836 0.93683 0.86707 0.91456 1.43798 1.53053 1.27719 1.06338 1.20713 0.91139 0.94683 0.91260 1.19275 1.31682 0.94425 0.91197 0.91485 1.24989 1.00869 0.97336 0.96946 1.70077 1.54632 1.28821 1.02440 0.86195 0.77704 0.84109 0.78666 1.20360 1.21869 1.21958 0.94561 0.90548 0.95448 0.92859 0.91469 0.92464 0.92369 0.92164 0.92639 0.91385 0.92654 0.95434 0.94022 0.99053 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.82 101.05 1.09 1.67 16 2 O -0.36 -7.38 10.21 -35.23 -0.36 -7.74 16 3 C 0.08 1.41 1.92 -26.73 -0.05 1.36 16 4 H 0.05 0.98 6.30 -51.93 -0.33 0.65 16 5 C -0.14 -2.08 5.54 -26.73 -0.15 -2.23 16 6 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 7 C -0.12 -1.74 5.92 -26.73 -0.16 -1.89 16 8 C -0.13 -2.38 5.21 -26.73 -0.14 -2.52 16 9 C 0.18 3.92 2.28 -67.93 -0.15 3.76 16 10 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 11 N -0.59 -15.24 2.68 -173.48 -0.46 -15.71 16 12 C 0.17 4.25 8.00 59.85 0.48 4.73 16 13 C -0.24 -6.75 9.59 -15.06 -0.14 -6.89 16 14 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16 15 C 0.00 -0.13 5.12 -17.43 -0.09 -0.22 16 16 N -0.91 -27.34 10.65 55.49 0.59 -26.75 16 17 Si 0.90 22.71 29.57 -169.99 -5.03 17.69 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 21 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 H 0.03 0.37 7.87 -51.93 -0.41 -0.04 16 24 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.05 1.04 7.67 -51.93 -0.40 0.65 16 32 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 33 H 0.04 1.15 7.24 -51.93 -0.38 0.77 16 34 H -0.01 -0.20 6.43 -51.93 -0.33 -0.54 16 35 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 274.62 15.07 4.14 4.14 Total: -1.00 -30.72 274.62 -6.56 -37.29 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -5.97 Total: -5.00 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.53 Total: -3.90 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.13 Total: -42.46 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.36 Total: -7.74 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.72 -6.56 -37.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306152742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.890 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds