Wall clock time and date at job start Mon Mar 30 2020 20:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99571 * 2 1 4 4 H 1.08996 * 109.47373 * 330.00292 * 3 2 1 5 5 C 1.52998 * 109.47074 * 90.00329 * 3 2 1 6 6 C 1.53005 * 109.47561 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.46985 * 300.00109 * 6 5 3 8 8 C 1.53002 * 109.47398 * 59.99635 * 7 6 5 9 9 C 1.53000 * 109.46920 * 299.99880 * 8 7 6 10 10 H 1.08996 * 109.47496 * 299.99863 * 9 8 7 11 11 N 1.46502 * 109.47171 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00294 * 300.01017 * 11 9 8 13 13 C 1.36936 * 119.99783 * 119.99880 * 11 9 8 14 14 H 1.08006 * 120.00035 * 23.17763 * 13 11 9 15 15 C 1.38813 * 120.00269 * 203.16776 * 13 11 9 16 16 N 1.31619 * 119.99791 * 11.69058 * 15 13 11 17 17 Si 1.86797 * 120.00186 * 191.68121 * 15 13 11 18 18 H 1.48507 * 109.47309 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47187 * 120.00267 * 17 15 13 20 20 H 1.48501 * 109.47292 * 240.00524 * 17 15 13 21 21 H 1.09002 * 109.47380 * 59.99811 * 1 2 3 22 22 H 1.08999 * 109.46717 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47361 * 299.99557 * 1 2 3 24 24 H 1.09006 * 109.47132 * 299.99729 * 5 3 2 25 25 H 1.08993 * 109.47763 * 59.99585 * 5 3 2 26 26 H 1.08992 * 109.47484 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.46622 * 59.99478 * 6 5 3 28 28 H 1.09006 * 109.46912 * 299.99739 * 7 6 5 29 29 H 1.08996 * 109.47583 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47423 * 180.02562 * 8 7 6 31 31 H 1.08995 * 109.47371 * 59.99803 * 8 7 6 32 32 H 1.08997 * 109.47347 * 93.93280 * 12 11 9 33 33 H 1.09006 * 109.46866 * 213.93702 * 12 11 9 34 34 H 1.08997 * 109.46842 * 333.92928 * 12 11 9 35 35 H 0.97005 * 119.99946 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 2.8404 3.1690 1.4426 7 6 4.1890 3.1263 0.7215 8 6 3.9817 2.6604 -0.7210 9 6 3.3589 1.2629 -0.7210 10 1 4.0238 0.5688 -0.2071 11 7 3.1598 0.8170 -2.1023 12 6 2.3001 1.5877 -3.0041 13 6 3.7773 -0.3200 -2.5504 14 1 4.0893 -1.0781 -1.8472 15 6 4.0023 -0.4985 -3.9085 16 7 3.8375 0.5078 -4.7407 17 14 4.5391 -2.1668 -4.5551 18 1 4.6511 -3.1232 -3.4246 19 1 3.5352 -2.6669 -5.5283 20 1 5.8573 -2.0368 -5.2264 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.2567 1.8014 1.9564 25 1 2.8828 1.0776 1.9564 26 1 2.9877 3.5010 2.4702 27 1 2.1754 3.8631 0.9286 28 1 4.8540 2.4321 1.2355 29 1 4.6326 4.1219 0.7212 30 1 4.9425 2.6296 -1.2346 31 1 3.3167 3.3545 -1.2350 32 1 2.9086 2.2885 -3.5755 33 1 1.7892 0.9090 -3.6873 34 1 1.5627 2.1387 -2.4204 35 1 3.9943 0.3830 -5.6898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306152742.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:00 Heat of formation + Delta-G solvation = -55.577296 kcal Electronic energy + Delta-G solvation = -15434.192096 eV Core-core repulsion = 13045.750496 eV Total energy + Delta-G solvation = -2388.441600 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33163 -37.45019 -36.39774 -33.20330 -30.94949 -29.86802 -28.02718 -27.17425 -24.90450 -23.11132 -22.09262 -20.44420 -18.71882 -17.46488 -17.12494 -16.28051 -15.99296 -15.60440 -15.21434 -14.54647 -14.38653 -14.27593 -14.12716 -13.63482 -12.99398 -12.82771 -12.77449 -12.51150 -12.46682 -12.15125 -12.04012 -11.88741 -11.77557 -11.49671 -11.33042 -11.06103 -10.65995 -10.21166 -8.69417 -7.78941 -5.24981 1.44313 1.45328 1.56649 2.52165 2.99965 3.33550 3.60360 3.89215 4.17731 4.21351 4.29522 4.37658 4.42630 4.53880 4.60901 4.61585 4.72786 4.79996 4.85869 4.96077 5.07935 5.17698 5.23824 5.27435 5.32805 5.34346 5.48239 5.59206 5.66777 5.70507 6.37640 6.52814 7.19692 7.92856 8.36319 9.24505 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033946 B = 0.010421 C = 0.009146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.641328 B = 2686.167203 C = 3060.688375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.401 6.401 3 C 0.081 3.919 4 H 0.048 0.952 5 C -0.131 4.131 6 C -0.108 4.108 7 C -0.112 4.112 8 C -0.120 4.120 9 C 0.174 3.826 10 H 0.049 0.951 11 N -0.605 5.605 12 C 0.187 3.813 13 C -0.246 4.246 14 H 0.060 0.940 15 C -0.057 4.057 16 N -0.941 5.941 17 Si 0.966 3.034 18 H -0.270 1.270 19 H -0.292 1.292 20 H -0.290 1.290 21 H 0.028 0.972 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.003 0.997 33 H 0.010 0.990 34 H 0.021 0.979 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.628 4.874 12.427 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.320 6.320 3 C 0.021 3.979 4 H 0.066 0.934 5 C -0.169 4.169 6 C -0.146 4.146 7 C -0.150 4.150 8 C -0.159 4.159 9 C 0.067 3.933 10 H 0.067 0.933 11 N -0.326 5.326 12 C 0.042 3.958 13 C -0.377 4.377 14 H 0.078 0.922 15 C -0.251 4.251 16 N -0.589 5.589 17 Si 0.795 3.205 18 H -0.195 1.195 19 H -0.219 1.219 20 H -0.217 1.217 21 H 0.047 0.953 22 H 0.106 0.894 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.505 4.689 12.258 13.876 hybrid contribution 0.108 -0.745 -1.074 1.312 sum -4.397 3.944 11.183 12.648 Atomic orbital electron populations 1.22801 0.80911 1.02882 0.99795 1.87938 1.20275 1.28711 1.95037 1.22704 0.95436 0.83787 0.95928 0.93362 1.21986 1.01777 0.97832 0.95324 1.21472 0.96000 0.95547 1.01534 1.21540 0.98037 1.01660 0.93779 1.21914 0.99792 0.96475 0.97744 1.20639 0.93693 0.94538 0.84397 0.93306 1.44006 1.53140 1.27396 1.08073 1.20370 0.90974 0.93475 0.90949 1.19490 1.31349 0.95397 0.91427 0.92226 1.25719 1.01613 1.00647 0.97169 1.70230 1.55858 1.30503 1.02337 0.85207 0.77062 0.80270 0.77977 1.19499 1.21854 1.21739 0.95324 0.89440 0.92477 0.90657 0.91739 0.89234 0.91711 0.91877 0.90387 0.94086 0.93027 0.97894 0.97078 0.96092 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.82 113.37 1.23 2.20 16 2 O -0.40 -15.81 10.21 -148.98 -1.52 -17.33 16 3 C 0.08 2.91 1.92 30.60 0.06 2.96 16 4 H 0.05 1.75 6.30 -2.39 -0.02 1.73 16 5 C -0.13 -3.51 5.54 30.60 0.17 -3.35 16 6 C -0.11 -2.45 5.92 30.59 0.18 -2.26 16 7 C -0.11 -2.97 5.92 30.59 0.18 -2.79 16 8 C -0.12 -4.41 5.21 30.60 0.16 -4.25 16 9 C 0.17 7.48 2.28 44.99 0.10 7.58 16 10 H 0.05 2.23 7.87 -2.39 -0.02 2.21 16 11 N -0.60 -31.97 2.68 -702.76 -1.88 -33.85 16 12 C 0.19 9.77 8.00 127.77 1.02 10.79 16 13 C -0.25 -14.40 9.59 84.03 0.81 -13.59 16 14 H 0.06 3.50 7.82 -2.91 -0.02 3.48 16 15 C -0.06 -3.38 5.12 84.86 0.43 -2.94 16 16 N -0.94 -57.86 10.65 21.65 0.23 -57.63 16 17 Si 0.97 47.50 29.57 68.60 2.03 49.52 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 20 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 21 H 0.03 0.88 8.09 -2.39 -0.02 0.87 16 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.06 1.37 7.87 -2.39 -0.02 1.35 16 24 H 0.07 1.73 7.87 -2.38 -0.02 1.71 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.91 7.67 -2.39 -0.02 1.90 16 32 H 0.00 0.16 7.41 -2.39 -0.02 0.14 16 33 H 0.01 0.60 7.24 -2.38 -0.02 0.59 16 34 H 0.02 0.94 6.43 -2.39 -0.02 0.92 16 35 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -67.30 274.62 4.23 -63.07 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.03 Total: 1.86 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 4.34 Total: -5.65 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -1.65 Total: -91.48 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -1.52 Total: -17.33 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -67.30 4.23 -63.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306152742.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.495 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds