Wall clock time and date at job start Mon Mar 30 2020 20:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47165 * 2 1 4 4 C 1.36936 * 119.99823 * 79.79130 * 3 2 1 5 5 H 1.07997 * 119.99765 * 39.00567 * 4 3 2 6 6 C 1.38813 * 120.00006 * 219.01342 * 4 3 2 7 7 N 1.31615 * 120.00062 * 25.46633 * 6 4 3 8 8 Si 1.86797 * 119.99576 * 205.47125 * 6 4 3 9 9 H 1.48505 * 109.47107 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47505 * 59.99927 * 8 6 4 11 11 H 1.48500 * 109.47317 * 299.99371 * 8 6 4 12 12 C 1.46503 * 120.00304 * 259.79615 * 3 2 1 13 13 H 1.08997 * 110.01623 * 162.25703 * 12 3 2 14 14 C 1.54269 * 110.03210 * 40.86667 * 12 3 2 15 15 C 1.54884 * 104.19468 * 217.10633 * 14 12 3 16 16 C 1.54889 * 102.74952 * 37.94571 * 15 14 12 17 17 C 1.53875 * 110.02866 * 283.65069 * 12 3 2 18 18 C 1.52999 * 110.03269 * 359.97438 * 17 12 3 19 19 O 1.42899 * 110.02955 * 238.56853 * 17 12 3 20 20 H 1.09001 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47000 * 299.99297 * 1 2 3 22 22 H 1.08995 * 109.47217 * 60.00100 * 1 2 3 23 23 H 1.09000 * 109.47321 * 240.00483 * 2 1 3 24 24 H 1.08999 * 109.47595 * 120.00224 * 2 1 3 25 25 H 0.97000 * 120.00039 * 6.26820 * 7 6 4 26 26 H 1.09004 * 110.48505 * 335.78876 * 14 12 3 27 27 H 1.08999 * 110.48566 * 98.29472 * 14 12 3 28 28 H 1.08998 * 110.75668 * 156.25876 * 15 14 12 29 29 H 1.08998 * 110.75649 * 279.44140 * 15 14 12 30 30 H 1.08995 * 110.48670 * 80.73442 * 16 15 14 31 31 H 1.08999 * 110.48221 * 203.37924 * 16 15 14 32 32 H 1.08997 * 109.46854 * 73.99603 * 18 17 12 33 33 H 1.09005 * 109.47042 * 193.99105 * 18 17 12 34 34 H 1.08992 * 109.47395 * 313.98981 * 18 17 12 35 35 H 0.96698 * 114.00029 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0484 2.0968 1.1671 5 1 2.3359 1.6138 2.0893 6 6 1.7091 3.4428 1.1650 7 7 0.9088 3.9183 0.2345 8 14 2.3886 4.5793 2.4826 9 1 1.8801 5.9565 2.2588 10 1 3.8722 4.5831 2.4161 11 1 1.9542 4.1021 3.8200 12 6 2.4744 1.9970 -1.2486 13 1 2.5011 3.0814 -1.1419 14 6 1.5342 1.6030 -2.4064 15 6 2.4797 1.4270 -3.6205 16 6 3.7315 0.7711 -2.9866 17 6 3.8721 1.4690 -1.6169 18 6 4.3480 0.4668 -0.5633 19 8 4.7960 2.5549 -1.7123 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4839 3.3145 -0.3945 26 1 1.0237 0.6665 -2.1815 27 1 0.8098 2.3951 -2.5961 28 1 2.0335 0.7680 -4.3653 29 1 2.7272 2.3930 -4.0605 30 1 3.5759 -0.2997 -2.8555 31 1 4.6122 0.9571 -3.6013 32 1 3.8060 -0.4712 -0.6833 33 1 5.4160 0.2878 -0.6884 34 1 4.1613 0.8697 0.4320 35 1 5.6961 2.2865 -1.9424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306177946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:14 Heat of formation + Delta-G solvation = -38.367782 kcal Electronic energy + Delta-G solvation = -15920.269424 eV Core-core repulsion = 13532.574085 eV Total energy + Delta-G solvation = -2387.695340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.05231 -35.51927 -33.68111 -31.75722 -29.78756 -28.72275 -26.77741 -24.33906 -23.38657 -20.91791 -20.29504 -18.67880 -17.02994 -15.80588 -15.19411 -14.84590 -14.05258 -13.69808 -13.33869 -13.10121 -12.87108 -12.26574 -12.07492 -11.79738 -11.38649 -11.13885 -10.86490 -10.66430 -10.59708 -10.56239 -10.35148 -10.06182 -9.95438 -9.82423 -9.55195 -9.21754 -9.11305 -8.25528 -6.70539 -5.97252 -3.30314 3.53868 3.60665 3.76196 4.62861 4.86784 5.12077 5.23969 5.46399 5.51820 5.60339 5.90645 5.98450 6.01870 6.10908 6.19286 6.24073 6.25678 6.38262 6.41278 6.54049 6.55120 6.62489 6.69135 6.73981 6.93822 6.99727 7.18297 7.23535 7.42067 8.19408 8.42082 8.69217 9.23411 9.90002 10.37357 11.24844 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.014176 C = 0.012130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.979205 B = 1974.749623 C = 2307.690920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.356 4.356 5 H 0.048 0.952 6 C -0.010 4.010 7 N -0.902 5.902 8 Si 1.059 2.941 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.294 1.294 12 C 0.183 3.817 13 H 0.097 0.903 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.147 4.147 17 C 0.104 3.896 18 C -0.158 4.158 19 O -0.554 6.554 20 H 0.030 0.970 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.270 0.730 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.228 -6.698 -5.156 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.300 5.300 4 C -0.485 4.485 5 H 0.066 0.934 6 C -0.214 4.214 7 N -0.540 5.540 8 Si 0.889 3.111 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.221 1.221 12 C 0.075 3.925 13 H 0.115 0.885 14 C -0.175 4.175 15 C -0.158 4.158 16 C -0.186 4.186 17 C 0.061 3.939 18 C -0.215 4.215 19 O -0.358 6.358 20 H 0.049 0.951 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.106 0.894 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.738 -4.764 -4.451 7.516 hybrid contribution 0.401 -2.056 -0.665 2.198 sum 4.139 -6.820 -5.116 9.478 Atomic orbital electron populations 1.22366 0.99732 0.98512 1.01968 1.20903 0.91805 0.87919 0.97789 1.43889 1.71117 1.10074 1.04935 1.19699 1.45980 0.95184 0.87631 0.93393 1.25888 0.95791 0.97459 1.02292 1.70757 1.24556 1.39302 1.19395 0.83629 0.76176 0.76370 0.74915 1.21200 1.21852 1.22067 1.20941 0.86658 1.00047 0.84904 0.88523 1.22863 0.98146 1.01563 0.94940 1.22383 0.96014 1.00040 0.97387 1.23094 0.98257 0.99518 0.97684 1.22842 0.92657 0.86477 0.91874 1.22412 0.97593 0.98781 1.02716 1.86691 1.21004 1.35049 1.93013 0.95060 0.92614 0.93566 0.94317 0.94746 0.91868 0.91260 0.91925 0.92640 0.91773 0.91792 0.92405 0.92827 0.95269 0.89448 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.85 37.16 0.37 -2.96 16 2 C 0.14 2.95 3.97 -4.04 -0.02 2.94 16 3 N -0.58 -13.98 0.95 -164.39 -0.16 -14.14 16 4 C -0.36 -9.79 8.46 -15.06 -0.13 -9.92 16 5 H 0.05 1.35 7.95 -52.49 -0.42 0.93 16 6 C -0.01 -0.28 4.70 -17.43 -0.08 -0.36 16 7 N -0.90 -26.96 12.40 55.49 0.69 -26.27 16 8 Si 1.06 25.82 29.99 -169.99 -5.10 20.73 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.18 4.23 2.05 -66.81 -0.14 4.09 16 13 H 0.10 2.71 5.89 -51.93 -0.31 2.40 16 14 C -0.14 -2.74 5.83 -25.07 -0.15 -2.88 16 15 C -0.12 -2.02 6.91 -24.74 -0.17 -2.19 16 16 C -0.15 -2.42 6.09 -25.01 -0.15 -2.57 16 17 C 0.10 2.07 1.33 -89.44 -0.12 1.95 16 18 C -0.16 -3.00 7.61 37.16 0.28 -2.72 16 19 O -0.55 -11.23 12.90 -35.23 -0.45 -11.68 16 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 22 H 0.05 0.93 6.59 -51.93 -0.34 0.59 16 23 H 0.04 0.74 5.93 -51.93 -0.31 0.43 16 24 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.27 8.07 7.33 -40.82 -0.30 7.77 16 26 H 0.07 1.34 4.57 -51.93 -0.24 1.10 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.98 7.61 -51.93 -0.40 0.59 16 31 H 0.06 0.84 8.07 -51.93 -0.42 0.43 16 32 H 0.05 0.96 5.76 -51.93 -0.30 0.66 16 33 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.09 1.97 6.43 -51.93 -0.33 1.63 16 35 H 0.36 5.39 9.05 45.56 0.41 5.80 16 LS Contribution 266.49 15.07 4.02 4.02 Total: -1.00 -30.12 266.49 -6.00 -36.12 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.70 Total: 5.85 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -0.30 Total: -14.63 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.53 Total: -40.41 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.45 Total: -11.68 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.10 Total: 20.73 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.12 -6.00 -36.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.247 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds