Wall clock time and date at job start Mon Mar 30 2020 20:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47165 * 2 1 4 4 C 1.36936 * 119.99823 * 79.79130 * 3 2 1 5 5 H 1.07997 * 119.99765 * 39.00567 * 4 3 2 6 6 C 1.38813 * 120.00006 * 219.01342 * 4 3 2 7 7 N 1.31615 * 120.00062 * 25.46633 * 6 4 3 8 8 Si 1.86797 * 119.99576 * 205.47125 * 6 4 3 9 9 H 1.48505 * 109.47107 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.47505 * 59.99927 * 8 6 4 11 11 H 1.48500 * 109.47317 * 299.99371 * 8 6 4 12 12 C 1.46503 * 120.00304 * 259.79615 * 3 2 1 13 13 H 1.08997 * 110.01623 * 162.25703 * 12 3 2 14 14 C 1.54269 * 110.03210 * 40.86667 * 12 3 2 15 15 C 1.54884 * 104.19468 * 217.10633 * 14 12 3 16 16 C 1.54889 * 102.74952 * 37.94571 * 15 14 12 17 17 C 1.53875 * 110.02866 * 283.65069 * 12 3 2 18 18 C 1.52999 * 110.03269 * 359.97438 * 17 12 3 19 19 O 1.42899 * 110.02955 * 238.56853 * 17 12 3 20 20 H 1.09001 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47000 * 299.99297 * 1 2 3 22 22 H 1.08995 * 109.47217 * 60.00100 * 1 2 3 23 23 H 1.09000 * 109.47321 * 240.00483 * 2 1 3 24 24 H 1.08999 * 109.47595 * 120.00224 * 2 1 3 25 25 H 0.97000 * 120.00039 * 6.26820 * 7 6 4 26 26 H 1.09004 * 110.48505 * 335.78876 * 14 12 3 27 27 H 1.08999 * 110.48566 * 98.29472 * 14 12 3 28 28 H 1.08998 * 110.75668 * 156.25876 * 15 14 12 29 29 H 1.08998 * 110.75649 * 279.44140 * 15 14 12 30 30 H 1.08995 * 110.48670 * 80.73442 * 16 15 14 31 31 H 1.08999 * 110.48221 * 203.37924 * 16 15 14 32 32 H 1.08997 * 109.46854 * 73.99603 * 18 17 12 33 33 H 1.09005 * 109.47042 * 193.99105 * 18 17 12 34 34 H 1.08992 * 109.47395 * 313.98981 * 18 17 12 35 35 H 0.96698 * 114.00029 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0484 2.0968 1.1671 5 1 2.3359 1.6138 2.0893 6 6 1.7091 3.4428 1.1650 7 7 0.9088 3.9183 0.2345 8 14 2.3886 4.5793 2.4826 9 1 1.8801 5.9565 2.2588 10 1 3.8722 4.5831 2.4161 11 1 1.9542 4.1021 3.8200 12 6 2.4744 1.9970 -1.2486 13 1 2.5011 3.0814 -1.1419 14 6 1.5342 1.6030 -2.4064 15 6 2.4797 1.4270 -3.6205 16 6 3.7315 0.7711 -2.9866 17 6 3.8721 1.4690 -1.6169 18 6 4.3480 0.4668 -0.5633 19 8 4.7960 2.5549 -1.7123 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 0.4839 3.3145 -0.3945 26 1 1.0237 0.6665 -2.1815 27 1 0.8098 2.3951 -2.5961 28 1 2.0335 0.7680 -4.3653 29 1 2.7272 2.3930 -4.0605 30 1 3.5759 -0.2997 -2.8555 31 1 4.6122 0.9571 -3.6013 32 1 3.8060 -0.4712 -0.6833 33 1 5.4160 0.2878 -0.6884 34 1 4.1613 0.8697 0.4320 35 1 5.6961 2.2865 -1.9424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306177946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:11 Heat of formation + Delta-G solvation = -58.474413 kcal Electronic energy + Delta-G solvation = -15921.141313 eV Core-core repulsion = 13532.574085 eV Total energy + Delta-G solvation = -2388.567229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.65746 -37.25232 -35.28544 -33.72125 -31.37001 -30.41747 -28.49760 -25.90591 -25.31115 -22.65809 -21.75125 -20.47001 -18.95194 -17.36769 -16.75834 -16.52167 -15.88384 -15.60261 -14.94203 -14.77785 -14.41746 -14.04558 -13.63315 -13.40543 -13.07829 -12.75228 -12.60592 -12.34472 -12.31104 -12.02351 -11.99127 -11.92094 -11.69932 -11.37834 -11.26971 -11.08415 -10.62763 -10.36840 -8.74547 -8.10260 -5.45221 1.54341 1.63312 1.80228 2.65743 3.19072 3.44232 3.57527 3.81690 4.02520 4.14132 4.35008 4.39959 4.50352 4.64889 4.69972 4.72809 4.78510 4.84167 4.93999 5.00339 5.01772 5.12853 5.20267 5.24896 5.27968 5.42671 5.47145 5.64543 5.66372 6.00570 6.50727 7.10205 7.23664 7.86207 8.32480 9.04443 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.014176 C = 0.012130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.979205 B = 1974.749623 C = 2307.690920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 N -0.590 5.590 4 C -0.351 4.351 5 H 0.036 0.964 6 C -0.061 4.061 7 N -0.931 5.931 8 Si 1.101 2.899 9 H -0.293 1.293 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.176 3.824 13 H 0.040 0.960 14 C -0.133 4.133 15 C -0.113 4.113 16 C -0.134 4.134 17 C 0.101 3.899 18 C -0.149 4.149 19 O -0.580 6.580 20 H 0.068 0.932 21 H 0.022 0.978 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.258 0.742 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 -8.694 -6.267 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 N -0.312 5.312 4 C -0.481 4.481 5 H 0.054 0.946 6 C -0.260 4.260 7 N -0.571 5.571 8 Si 0.927 3.073 9 H -0.219 1.219 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.068 3.932 13 H 0.058 0.942 14 C -0.171 4.171 15 C -0.151 4.151 16 C -0.172 4.172 17 C 0.058 3.942 18 C -0.206 4.206 19 O -0.387 6.387 20 H 0.087 0.913 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.891 -6.795 -5.569 10.055 hybrid contribution 0.080 -1.475 -0.317 1.511 sum 4.972 -8.270 -5.886 11.303 Atomic orbital electron populations 1.22255 0.99112 1.00303 0.99985 1.21002 0.92232 0.86200 0.98942 1.43986 1.71898 1.10930 1.04354 1.19823 1.44170 0.95539 0.88612 0.94647 1.26995 0.96050 0.99347 1.03629 1.70848 1.26568 1.39025 1.20663 0.83050 0.75766 0.74532 0.73926 1.21938 1.21329 1.20007 1.20911 0.89882 0.96945 0.85470 0.94210 1.22777 0.97884 1.00899 0.95575 1.22373 0.95515 1.00704 0.96493 1.23005 0.98949 0.99998 0.95260 1.22721 0.90587 0.86451 0.94406 1.22280 0.99664 0.98660 1.00001 1.86638 1.22752 1.36022 1.93337 0.91272 0.95860 0.94257 0.91600 0.94916 0.93212 0.90343 0.94404 0.89312 0.92449 0.89735 0.89771 0.91542 0.92425 0.93630 0.77238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.13 9.85 71.98 0.71 -5.43 16 2 C 0.14 5.70 3.97 86.38 0.34 6.04 16 3 N -0.59 -28.73 0.95 -674.00 -0.64 -29.37 16 4 C -0.35 -19.82 8.46 84.03 0.71 -19.11 16 5 H 0.04 2.06 7.95 -2.91 -0.02 2.03 16 6 C -0.06 -3.58 4.70 84.86 0.40 -3.18 16 7 N -0.93 -57.97 12.40 21.65 0.27 -57.70 16 8 Si 1.10 53.53 29.99 68.60 2.06 55.59 16 9 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 10 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 C 0.18 8.17 2.05 45.72 0.09 8.27 16 13 H 0.04 2.32 5.89 -2.39 -0.01 2.31 16 14 C -0.13 -5.23 5.83 31.67 0.18 -5.04 16 15 C -0.11 -3.46 6.91 31.88 0.22 -3.24 16 16 C -0.13 -3.84 6.09 31.71 0.19 -3.65 16 17 C 0.10 3.81 1.33 -10.03 -0.01 3.80 16 18 C -0.15 -5.31 7.61 71.98 0.55 -4.76 16 19 O -0.58 -22.82 12.90 -148.98 -1.92 -24.74 16 20 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 21 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.04 1.56 6.59 -2.39 -0.02 1.55 16 23 H 0.07 2.30 5.93 -2.39 -0.01 2.29 16 24 H 0.03 1.33 8.12 -2.39 -0.02 1.31 16 25 H 0.26 16.19 7.33 -92.71 -0.68 15.51 16 26 H 0.08 2.90 4.57 -2.38 -0.01 2.89 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.12 7.61 -2.39 -0.02 2.10 16 31 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.07 2.16 5.76 -2.39 -0.01 2.14 16 33 H 0.06 1.70 8.12 -2.38 -0.02 1.68 16 34 H 0.04 2.01 6.43 -2.39 -0.02 1.99 16 35 H 0.38 10.53 9.05 -74.06 -0.67 9.86 16 Total: -1.00 -68.03 266.49 3.64 -64.39 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.49 Total: 18.14 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.39 Total: -26.30 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -0.37 Total: -87.07 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -1.92 Total: -24.74 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.06 Total: 55.59 kcal Total: -68.03 3.64 -64.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.911 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds