Wall clock time and date at job start Mon Mar 30 2020 20:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47441 * 2 1 4 4 C 1.36936 * 120.00505 * 263.24084 * 3 2 1 5 5 H 1.07996 * 120.00192 * 193.58789 * 4 3 2 6 6 C 1.38810 * 119.99760 * 13.59052 * 4 3 2 7 7 N 1.31621 * 120.00062 * 13.97610 * 6 4 3 8 8 Si 1.86803 * 120.00220 * 193.97430 * 6 4 3 9 9 H 1.48505 * 109.46814 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47332 * 119.99832 * 8 6 4 11 11 H 1.48500 * 109.47341 * 240.00187 * 8 6 4 12 12 C 1.46508 * 119.99754 * 83.24239 * 3 2 1 13 13 H 1.09001 * 110.01417 * 6.75717 * 12 3 2 14 14 C 1.54258 * 110.03453 * 128.20235 * 12 3 2 15 15 C 1.54891 * 104.19912 * 142.89485 * 14 12 3 16 16 C 1.54891 * 102.74228 * 322.05411 * 15 14 12 17 17 C 1.53873 * 110.02983 * 245.36763 * 12 3 2 18 18 C 1.52999 * 110.03520 * 0.04593 * 17 12 3 19 19 O 1.42903 * 110.03393 * 121.43100 * 17 12 3 20 20 H 1.09007 * 109.47101 * 299.99888 * 1 2 3 21 21 H 1.09003 * 109.47375 * 59.99263 * 1 2 3 22 22 H 1.08999 * 109.47588 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47101 * 240.00112 * 2 1 3 24 24 H 1.09003 * 109.47375 * 120.00737 * 2 1 3 25 25 H 0.96996 * 120.00143 * 180.02562 * 7 6 4 26 26 H 1.09002 * 110.48416 * 261.57276 * 14 12 3 27 27 H 1.09000 * 110.48686 * 24.08184 * 14 12 3 28 28 H 1.08991 * 110.75366 * 80.36965 * 15 14 12 29 29 H 1.09005 * 110.75468 * 203.55828 * 15 14 12 30 30 H 1.08998 * 110.49126 * 279.26274 * 16 15 14 31 31 H 1.09011 * 110.47957 * 156.62059 * 16 15 14 32 32 H 1.08997 * 109.47330 * 171.71813 * 18 17 12 33 33 H 1.09003 * 109.47586 * 291.72636 * 18 17 12 34 34 H 1.09011 * 109.46927 * 51.72286 * 18 17 12 35 35 H 0.96698 * 114.00163 * 180.02562 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3782 1.9802 -1.1776 5 1 2.9379 2.9038 -1.1647 6 6 2.0236 1.4004 -2.3879 7 7 1.1213 0.4427 -2.4196 8 14 2.8270 1.9794 -3.9719 9 1 3.8001 3.0590 -3.6674 10 1 3.5339 0.8416 -4.6131 11 1 1.7854 2.4982 -4.8944 12 6 2.1218 2.1215 1.2600 13 1 1.9109 1.4596 2.1000 14 6 3.5338 2.7257 1.4035 15 6 3.2924 4.1004 2.0752 16 6 1.9836 4.5840 1.4027 17 6 1.1361 3.3030 1.2595 18 6 0.3558 3.3341 -0.0562 19 8 0.2331 3.1878 2.3611 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5140 0.8899 25 1 0.8738 0.0373 -3.2653 26 1 4.1559 2.0949 2.0385 27 1 3.9956 2.8531 0.4244 28 1 3.1549 3.9861 3.1503 29 1 4.1146 4.7838 1.8628 30 1 2.1940 5.0137 0.4233 31 1 1.4743 5.3095 2.0372 32 1 -0.4379 4.0783 0.0095 33 1 1.0300 3.5930 -0.8726 34 1 -0.0809 2.3529 -0.2429 35 1 -0.4144 3.9038 2.4155 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306177947.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:41:17 Heat of formation + Delta-G solvation = -39.314442 kcal Electronic energy + Delta-G solvation = -15947.504609 eV Core-core repulsion = 13559.768219 eV Total energy + Delta-G solvation = -2387.736390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51008 -37.17221 -35.42384 -32.89446 -31.14104 -30.76446 -28.23107 -26.44990 -24.67747 -22.63024 -21.77205 -20.32946 -18.27383 -17.21572 -17.07879 -16.38497 -15.77332 -15.24366 -14.92311 -14.42154 -14.21163 -13.83527 -13.55264 -12.98757 -12.92244 -12.74793 -12.53863 -12.47391 -12.25753 -12.08225 -11.86351 -11.80997 -11.43092 -11.33855 -11.17994 -11.04613 -10.51500 -10.20934 -8.61945 -7.64833 -5.05243 1.49390 1.53873 1.60109 2.58232 3.34226 3.44710 3.71514 3.94771 4.11177 4.24077 4.55191 4.62794 4.71287 4.76302 4.87835 4.93292 5.02300 5.10185 5.15623 5.22987 5.25243 5.28261 5.34236 5.43323 5.54317 5.59597 5.71921 5.89773 5.94502 6.20819 6.49279 7.07767 7.32642 8.01641 8.44270 9.34573 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030492 B = 0.013785 C = 0.011715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.057209 B = 2030.740387 C = 2389.526904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.168 3.832 3 N -0.596 5.596 4 C -0.215 4.215 5 H 0.075 0.925 6 C -0.057 4.057 7 N -0.925 5.925 8 Si 0.951 3.049 9 H -0.271 1.271 10 H -0.300 1.300 11 H -0.301 1.301 12 C 0.174 3.826 13 H 0.050 0.950 14 C -0.130 4.130 15 C -0.110 4.110 16 C -0.139 4.139 17 C 0.111 3.889 18 C -0.152 4.152 19 O -0.577 6.577 20 H 0.012 0.988 21 H 0.064 0.936 22 H 0.026 0.974 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.241 0.759 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.477 6.670 7.103 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.042 3.958 3 N -0.317 5.317 4 C -0.345 4.345 5 H 0.093 0.907 6 C -0.250 4.250 7 N -0.574 5.574 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.227 1.227 11 H -0.229 1.229 12 C 0.066 3.934 13 H 0.069 0.931 14 C -0.169 4.169 15 C -0.148 4.148 16 C -0.177 4.177 17 C 0.069 3.931 18 C -0.210 4.210 19 O -0.384 6.384 20 H 0.031 0.969 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.090 0.910 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.797 6.035 7.068 9.466 hybrid contribution -0.322 0.416 -1.292 1.396 sum 1.475 6.452 5.775 8.784 Atomic orbital electron populations 1.22157 0.98979 0.98111 0.99453 1.20768 0.92740 0.84877 0.97375 1.44337 1.75092 1.10062 1.02161 1.19247 1.25480 1.05899 0.83839 0.90691 1.25312 0.99542 1.00661 0.99513 1.70256 1.33188 1.30169 1.23770 0.85425 0.77825 0.77176 0.81392 1.19571 1.22723 1.22896 1.21024 0.92917 0.91587 0.87864 0.93126 1.22704 0.96714 0.96840 1.00656 1.22354 0.97101 0.95853 0.99486 1.22946 0.97151 0.96744 1.00872 1.22544 0.89471 0.96138 0.84986 1.22429 0.99236 1.01156 0.98140 1.86502 1.48517 1.53256 1.50099 0.96854 0.91738 0.95467 0.91031 0.97542 0.94897 0.91854 0.91824 0.90971 0.90421 0.91753 0.90059 0.94808 0.91601 0.92829 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.29 71.98 0.60 -5.51 16 2 C 0.17 8.26 5.55 86.38 0.48 8.74 16 3 N -0.60 -28.45 1.66 -674.03 -1.12 -29.56 16 4 C -0.21 -10.82 5.57 84.03 0.47 -10.35 16 5 H 0.08 3.71 6.40 -2.91 -0.02 3.69 16 6 C -0.06 -3.00 5.11 84.86 0.43 -2.56 16 7 N -0.92 -51.05 8.15 21.65 0.18 -50.88 16 8 Si 0.95 43.78 29.58 68.60 2.03 45.81 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 12 C 0.17 7.19 3.22 45.71 0.15 7.34 16 13 H 0.05 2.19 7.70 -2.39 -0.02 2.17 16 14 C -0.13 -4.61 6.35 31.67 0.20 -4.41 16 15 C -0.11 -3.14 6.91 31.89 0.22 -2.92 16 16 C -0.14 -4.22 6.09 31.67 0.19 -4.03 16 17 C 0.11 4.11 1.31 -10.07 -0.01 4.10 16 18 C -0.15 -6.36 7.37 71.98 0.53 -5.83 16 19 O -0.58 -20.05 12.90 -148.98 -1.92 -21.97 16 20 H 0.01 0.59 7.93 -2.38 -0.02 0.57 16 21 H 0.06 3.44 5.47 -2.39 -0.01 3.42 16 22 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 23 H 0.07 3.92 5.80 -2.38 -0.01 3.90 16 24 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 25 H 0.24 13.24 8.31 -92.71 -0.77 12.47 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.48 6.17 -2.39 -0.01 2.46 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.06 2.03 7.71 -2.39 -0.02 2.01 16 31 H 0.08 2.05 8.06 -2.38 -0.02 2.03 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 2.99 5.50 -2.39 -0.01 2.98 16 34 H 0.05 2.60 4.58 -2.38 -0.01 2.59 16 35 H 0.38 9.80 9.07 -74.06 -0.67 9.13 16 Total: -1.00 -56.97 260.81 2.83 -54.14 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.40 Total: 17.90 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 3.26 Total: -15.44 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -0.94 Total: -80.44 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.92 Total: -21.97 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -56.97 2.83 -54.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306177947.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.830 kcal (2) G-P(sol) polarization free energy of solvation -56.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds